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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97121_cuf5 >transcript:BL97121_cuf5-protein ID=transcript:BL97121_cuf5-protein|Name=transcript:BL97121_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=472bp
MSFGRTSGMVSGGGGGRFGGGGGGGFGGGGGGGGGGGGGGGGGGMSLTRS
GGGGGGGMNERQELNTLNTRLGGYINKVRSLEARNAELEMLIAEAAKTHA
AAGSVTAPISIDDSELRAMKKEIQGVANEVSYLESEKSTLIAEIENLRRQ
LEDLMRRRSEMESDISGAKGDLDAALGALDGLQDEVAQAEDEMSSAAQGP
GQATTIEEQIDVVQVERLRADLNDSLAALRGEFEQLASQGIADVEGDWEA
KLRELQAEIERLKALLEELRMQISALRAELSAILAEAEQINATNISLERD
LKTLRETIRTRLEDYKLTIADLNTEAQSIDGEIQSVVAQYNDLLNKKLAL
EKEVIDYEQLVGSENNRLKVQGGGYAIQQISIGSGSSSGGLGGGMGFGGG
GGGFGGGGGGFGGGGGGFGGGGGGFGGGGGGGGGFSKGGGGGGGFSRGGG
GGGGFSKGGGGFSKGGGIKFNL Run BLAST on NCBI mRNA from alignment at Sc0000137:311204..319060- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97121_cuf5 ID=transcript:BL97121_cuf5|Name=transcript:BL97121_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=7857bp|location=Sequence derived from alignment at Sc0000137:311204..319060- (Branchiostoma lanceolatum)
TACTCAAGCGTTGCTGGAATGCCATGCCGAATGCATCCGTTAGTTCTTCA
GTGAGAGGGCGTTGGTTTAGTTACGGGTCACATTCTATCAAACAAGTTAC
CTTTAAGGTAGCAAAAAAGTGGAACTAAGGGTCTTCCACAACTTAAAGCT
CGACCTGGTCTAAGATGTGGAGCAGAACCAAATAATGCGTCTTCTAGGAA
GCCTGTCCAAGCAAACAGAAGACGGAGTATGTATCCCTATGTGTGGCAGC
CGGGTGGGACCTTTAAGCGCTTGAATTTAAATCGGCCCCTTTAAAACCCT
CAGGCCCGTCTTTTGTATTGAAAGGGAAGACTCGTTCTTTCAGTCTACGA
CTCTTTCTGCACGCCAAAAAAACTGTAGGCGTGACGAACCAATGAGGAAA
GAGGACAGAAGAGTGATTGACAGATGAGTCTGACGATCTTCGCCACAGGG
TATGGTTGGATAAGGGACGACACTCGACTAGATCTTACCGGCTTGGTCGG
GTCGGAAAGTTTACGCCACATTCGTCTTATTTTACCCCCTTTTCTTTTGG
CTCTCAGTCTGAAAATAAAGAGGAGAAAATGTCGTTCGGTCGTACGAGCG
GGATGGTGTCTGGTGGCGGCGGCGGCAGATTCGGCGGCGGCGGAGGTGGA
GGATTCGGCGGCGGCGGCGGCGGAGGAGGCGGCGGCGGCGGAGGAGGCGG
CGGCGGCGGCATGAGTCTCACTAGGTCAGGAGGCGGTGGCGGCGGCGGGA
TGAACGAAAGGCAAGAGCTGAACACGCTCAACACCCGCCTCGGAGGCTAC
ATCAACAAGGTAAGGAGCCTAGAAGCTCGCAACGCCGAGCTGGAAATGCT
GATCGCGGAAGCGGCGAAGACTCACGCCGCCGCCGGATCCGTCACCGCGC
CCATCAGCATCGACGACTCCGAGCTCAGGGCCATGAAGAAAGAGATCCAA
GGCGTCGCCAACGAAGTCTCCTACCTAGAGTCAGAGAAGTCCACTCTCAT
CGCAGAAATCGAAAACCTTAGGAGACAGTAAGTCTTACTCCGTCGTCTTA
AAACTGTAGTTAACGCAGTAAGATAGCCCGCACGTTTTCTACATAATCGG
GGCGATATATCCAAACATGCCTATTCAAATCGTAGCTTTGAATATGATAT
TTGAGCAACGATTGTATGCAAATCTCTTTCAAAACATAAACAAGAGCAAT
ACTAGTACACAAATAAGTTTTTCTAAACTTTCAACCACGTAAACTGTTGC
AAAATAATGTCAGGATAATGCTTCATTCGCACCACTTACAAATGCCTAGC
TCGTATTGCCACTTTTTGTCCTAGTCAAAACAGCATTTTAGACATTTCAT
TGCCGCTATATAAAATACGAAAGGTATATGACAAATAAGGATCTGTAGAA
CACCGAGTTTTGCAAGCATATGGAAAGAGTTTCTAAACACGACAGAGAAA
CTGCACCCTGTTCTAAAATGAATGTTTAAAAAGGGGCGTGTCTCTTCTGG
CTGATGGTTTGCGGCCATGCCCCATTCGTCCGAACAAGGGACACCTTGCA
AACTTCTCTGTCGATTCGTTTTAACATTTATACACAAATAATGTTGTTGA
CGTCCGTATAAATCGCCAAAAAGTTCCTATTCTGATCTGATGGAAGATGT
AGGTAATCATTATGTTTAGCCAGATAGACTGTCAACAACTGAGAGGAAGT
TAAGTAACTTTCACCTATCAAAATTGCCTACCTGCATTTTTCTTGTTCAG
AGCCTTAGTTCACAAATTCTAGGGGATGGAACTTTCTAATATCGTGGAGC
TTCCTTGTCTATATTTAGAAAGTACACCTAGCTAGCAAGTTTATTGCAGT
TATGCATGATCTAAAGACTCTAGTTTTCAATCAGCATTTAAATGCCAATA
TGTTGTATTTAGGATATAGTTTTGCGGGAAGATATTTTTCAGAGCGCATA
AAATGCCAATTTTGAGGGTGCATATACTTTGCTAAACGTAAACCCCAAAC
CAAACTAGGTGCGGCAAAATTCCGACGCCATTTTGATTATTCCGGTCAGA
TACCATCCTCCGTGGTAATGGAACATTCTAGTCACGTGACGCGGCCGCCA
TTTTGTTTTTTGTGTGACCGAAGGCGTCCGTCTGGTTCTGCTACAGTAGT
TTTCTGTGTCGTCTGCAGTTCGGAATGTAAAGTAGTCCAACAGGTGGCGT
TAGCAGATGCTACCACCAACAGGCTAACATTTGGAGCAAACGCTTCACAT
TTATCAACCCAAAGAATGCCATCTATCACCTAAAATGATTCTGAAAAACC
TTGTAGACAAAATGAAGATCCTAACAAGGGTAAAATACAATGGGTTGGTA
GAATTGTAACCTAAAAATTCAAGCACAAATGAATGAGTATTTAACTACAA
AAGACATGAATGCAGAAAATGTTCTAATTGTTCAGTTAGTTAGGCACTCG
GAACTAAAATAATAACAAACGTCTGCAGAGCTAACCCAACAAGTCTGTTA
AATCAATTCAACTAGAATGTCGGAAACATTGAAATGCTTAATAGCCTACT
TATTTTCGCCTAGCTGTTTTTTTTTCAAAATTATGTTTTTTTATACTAAC
ATGACTTGTAACTTGTAACTGACATTCATGCAATCAATAAACCTATCATT
GCCGAATGTATATGACTTCGATTTTATTTCTTATCACGAAAAAGCGTTTT
CCAGCGTCTTATACATGAATTCTTTCCTTCTAGGCTAGAAGATCTGATGA
GAAGGAGGTCTGAGATGGAGTCCGACATCAGTGGGGCTAAAGGGGTGCGT
ATCATGTCTTATTTCAGTATATGTAATCTTAAAAGTTAATGGTAGTCCCA
TAGCCTTTTGGGGGGCCATAGGGAGAGCGGGGTATATCCACTGGGGCTAG
GCCACGGTATTGGAAGGCAGAGTCAGGAACACATTCTAACACCCAGTTGG
AGTAAAGAAAGTGGTGTAAATTGCTTTTACCAAGGGCACAACATCGGTGG
CATGTCAGGGGATTCGAACTCAGGGCCTCTGGGTTCTTGGTCAAACACCT
TAACCGTTACACCAACACGACGCCACCATGTAATCTAGAGCGCACAACAG
CTATACAAGGCGAGTTCTTGCAACAAGCTTTGGTATCTTCTGAAACTGTT
GGAATGTGAACCCGGTAAAGCAAATGATCCTTAACCAATCAATTGATTCT
TGTATACCTCAAGAACAAAGGCTCATCTTTCTCTCTTACCTTTAAGATGT
CATGCTGACATGTGTCTGTTTACTTCAGGATCTGGACGCTGCGCTGGGCG
CCTTGGACGGTCTTCAAGACGAGGTGGCTCAGGCTGAGGATGAGATGAGT
TCCGCTGCTCAAGGTCCTGGCCAGGTAGGTAGTGATCTATGTAGTTAGTC
ATTCTTAAGGGTGTTAAGTGTGATATGGTACAGCACAATTGTATTTCAAT
TCTTTCAATGTCAAGATGAAGCCATCATTAAACGGACGTCCACTCAGTCA
TCTAGTCGGAATTTAGCTGTATATTTGCATCTGAATACCTGGAAGTTGAA
GTCCAGCATTTCCTGGTAAAAAGTTTTCGGCTTAGCTCTATAACGTTTAT
CTATAAGGTGAAAATTGTGCGTAACGACCACTCAGGGGGCTCAGTGTTTG
CCGTAGACAAATGGTTACAATACAGAGGAAGCTGGTCATACCATGGTCAA
TGCAAAGGACCGCCATGAAAGAAGTGACAATAATAGTCAGGTCGTTCTTA
TGCAGAGGTGCTCATTAGTATGAGTTTGTCTGTACATCAATGGCCAGTTG
GTCCTTATGTAGAGGTGGTCACTAGTACAAGTTTGACTGCGTATATCAAT
GCCCAGGTCATCTACATTAGGTCTTTACAACCATCCCTCAACAAAGACGG
GGGGCGCCATAGACTTTCTGCAACTCATGATCCACTGCTCACCAAGTCAC
GTGTTCTATCTGAACATAACGTGACGTCATGGAAGCAATAGGTTACTCAT
TCCTTGACAAAAGTTCCAATATTACAGGTCAACTTCGTTTTAGAATGACT
TCTACTAACACATATGAACTTTCAAGTGTGTTCGTTCTTCTTCCTCAGGC
TACGACCATCGAGGAGCAGATCGACGTGGTGCAGGTGGAGCGCCTGCGGG
CCGACCTGAACGACTCCCTGGCGGCCCTGCGCGGAGAGTTCGAGCAGCTG
GCGTCACAGGGCATCGCTGACGTGGAGGGAGACTGGGAGGCCAAGGTAAG
AAACATTGACGTCGTTTTACTCATGTTTAATTTAACGTCTTAAGTCTCAG
GGCCTGACAGCTGAATGAGCATCCTCACTTTTATTGTTCGTGATCTCCTA
ACACCCCCACCTCCTTTAGTCTATCTAGTCAGTCCAGTCTCTATTTTATC
GCGTCAGTCTTTTCCTTTAAATAAAAAGGAATACCTTATCTTCAGACAAA
CAAAAAGCAATGCCTTTATAGTTTACGACCTTCTCTATGCTTGCCTAACT
ACCGAACTGGTATGACCAGGTGCTGCCCAGTTGCTTCTTTTATTTATGGC
TACAAGGACCTTGGCTACTTAGTTTTAGCATCATCTAATACAAGTTCAGT
GTCATCTTTTATCTTATCTTATCGTCGTTTGGAAGCCCTCCTTATGGCGT
CAGATTAGCCAAATCCTGGTGGTATGCCTTACAAACAACAGAAATTGTTG
GTCTTGTTGGTATATCGCAATACTATCTCATTTGCCATGTCATTATAGCA
TTTTCTCTCTTATATTTGAATATGAAGCAATATAGAACGTATTTGACACA
ACAAATTTGAAGGACATCCATTTTCATACGGTCTTCTACAACTATCTTGA
AACTATTTTTCAGCTGAGAGAGCTCCAGGCAGAAATCGAAAGGCTGAAGG
CTCTGCTGGAGGAACTGCGCATGCAGATCTCTGCTCTGAGGGCAGAACTG
TCGGCCATCTTGGCTGAGGCAGAGCAGATCAACGCAACGGTTAGTATCTC
TGACGTCATACTTTTCGAATGATGACAATGATGATGATGATTTTCATAGT
GTAATAGTTTAAAAAACCATGTAAGAAATCGGTTTCTCGGTTGCTTCTCT
TAGAAGTCTGTAATTTGAAACTGTTGCTGTTCAGGCCTTTATATTATGTC
GAGTGTTGGCCTCCTACTGCAATCCCCATGGTTCGTAGAGGATTCTATCC
AACACACCCTTCCTGCATTCGTCAATTTGTAGACACGTATTCCTTCTCAG
CGCCTTCAAGTAGGTGAGGGGAACTGTCTTTTGACTATCATTTTGCCATG
TATTGGTGGCACTCATTGAGCTAGGTCAAATGACAAAACCCAAACAATGC
CCAACAAAAGTGAAGTCACAGTGCATAGTACAATTTGAATGAACGTTGTC
TCTGGTTATCTTTTCTGTAGAACATCAGTCTTGAGCGTGACCTCAAGACC
CTCCGGGAGACCATCCGTACGAGGCTGGAGGACTACAAGCTCACCATCGC
AGACTTGAACACAGAGGCGCAGAGTGTAAGACATGTCTTAAACCTTAAAA
CATAAGACATGCCTTGAACTTCAGAACATAAGACATGTCTTCAACTTCAG
AACATATAAGACATGTCTTAAACTTCGGAAGATAAGACATGTCTTCAACT
TCAGAACATATAAGACATGTCTTAAACTTCGGAAGAAAAGACATGTCTTT
AACTTCAGAACATAAGACATGTCTTAAAGTTCAGAACATAAGACATGTCT
AAAACCTCAGAACATCGTAAGGCTCCAGCTTCAGATAAAATCTCAGTCTA
CGATCATCCATAGGGGGGTGTTGTTCATGATAGTCAAATTCAAAATGTCG
CATACATGTATGCAGCAAAAGAGCTTTATGCAATACAATATGTCAGTCAT
GTGATGTTTTTCGTTAGGTTGATGCAGAAAACAACGGACAGCTGAAAAAG
ACGTTTCTGTGTAATATTTCAATGATCTGTAGCCTTGTATGCAGTAACCA
TCAAAGAGCTTTATGTAAATGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGAGGTAGAGGTAGTAGTAGTAGCAGTAGAACATGT
ACCTAAACCGGACCTGTACCAAAACCTTTGTACTGGTAGCTGCACCTGTA
GCTGATATCATGTTCAGGTACGCAGCCCTAAGTTGTAGTAGGTAACTGTC
CATTTCTTGAGATGATGGTAGCCTTCTCAGTTGAGGATCACTATGTCATA
GTATCATCTGCTGTGACTCAGAAAGCCCCATACACGCATTTTAGTCACGA
CTATAGTTGGCTCAAATCTAGATGTAAAGGTCCTGATGTTATTTCTCTGC
CGTTATTATTAGATTGACGGAGAGATCCAGTCTGTGGTCGCCCAGTACAA
CGACCTGCTGAACAAGAAGCTGGCGTTGGAGAAGGAAGTGATCGACTATG
AGCAGCTCGTCGGTAGCGAGAACAACAGGTAATCTAAGATGTTCTCATCT
TTCCTGAAGACGTGAAAAAAAACACAGCGAGAAATGGTAACGTTTGCAGC
CAAATTTGATTACCATAACGCGTGCATGAAAAGGCAGTCAGAGATTTAGG
TAGGTTCTAGTTCAGAGCACTGCAAAACGGTCTATTTTTGTATATTTCGT
ATTGCTGATAATGCCGAGTTAGCTATAGGAGATGGTTTGTAGTCGCCAGC
ATACCTCAACATTGCCGCCAGACAAAATAGCTGTACCCAGTGTTGTAGGC
CTTCTCTTCTTCTGTCAACTGCCTTCCACATCTTGTGTCAACTGTTCTCT
TTTGTTGGCATATTCCTTCAATACTGCCTTGTTCGTGTTTTGATTACCGT
GATTCTTGCCATTTTGTAGGCTCAAAGTCCAAGGAGGAGGCTACGCCATC
CAGCAGATCTCCATCGGCTCAGGCTCCAGCAGTGGAGGCCTTGGAGGCGG
CATGGGCTTCGGAGGTGGCGGCGGCGGCTTCGGAGGCGGCGGCGGCGGCT
TCGGAGGCGGCGGCGGCGGCTTCGGAGGTGGCGGCGGCGGCTTCGGAGGT
GGCGGCGGCGGCGGCGGTGGATTCAGCAAAGGCGGCGGCGGAGGCGGTGG
ATTCAGTCGAGGAGGAGGAGGAGGAGGCGGTTTCTCCAAGGGAGGCGGAG
GGTTCTCCAAGGGAGGAGGCATCAAGTTTAATTTGTAAACGATGGGGTTG
GCTCGTAACACTGTCTTCCCACCACCGTACATTCTCAGCATATCCTTTGC
ACAAGGAATGCGTCACAGTCGTAGTACGCTAGTAAGGCTACAGCTGTATT
TCAAATCTTAAGTATTACTGCACAGAATCCGATATTTAAGCACACATTAG
AGCTTGCGTAAAGGTTCCGTTTCTCTCGAAACAGAACCTTTAAACAGGCT
TTAAGGTGTTTTTAATGATCAAATTTTATGCAGTGAGACTAGCTGCTCTA
TACATTTACACCGGTGCGGTGCTAGTGATCATTCTTATCTGTTGTCTCTT
TTTTCCTTCGGTTCGCGCGTTTTATTCTTTAAGCCTATGCAAAGCTTCAA
CGAAATCGCAATATCTACTTTTGCAAACCACTAGGCAAAATATACACAAT
TTGTACCAGATCATAATTATAGAGTTTGCATAACGGCAGCTCGTTTAGAA
ATAGGAGAGGATATCATAATGTGATTGTAATACAATAAAAAGAGGATGCG
ATACTTTGAAGACTAAATGTAATAGTTGGTAATGTCTGACTAGACATGTA
GGGGTATGCGGTAAGCTGTTACTAATGCCAAGTTGATAGTCTGGCTTGTC
ATGGAAGTGTTTTTCTTGGTGTTGCAATAAAAAGATTCTGGATATGGGGA
AAATACA Coding sequence (CDS) from alignment at Sc0000137:311204..319060- >transcript:BL97121_cuf5 ID=transcript:BL97121_cuf5|Name=transcript:BL97121_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=1419bp|location=Sequence derived from alignment at Sc0000137:311204..319060- (Branchiostoma lanceolatum)
ATGTCGTTCGGTCGTACGAGCGGGATGGTGTCTGGTGGCGGCGGCGGCAG
ATTCGGCGGCGGCGGAGGTGGAGGATTCGGCGGCGGCGGCGGCGGAGGAG
GCGGCGGCGGCGGAGGAGGCGGCGGCGGCGGCATGAGTCTCACTAGGTCA
GGAGGCGGTGGCGGCGGCGGGATGAACGAAAGGCAAGAGCTGAACACGCT
CAACACCCGCCTCGGAGGCTACATCAACAAGGTAAGGAGCCTAGAAGCTC
GCAACGCCGAGCTGGAAATGCTGATCGCGGAAGCGGCGAAGACTCACGCC
GCCGCCGGATCCGTCACCGCGCCCATCAGCATCGACGACTCCGAGCTCAG
GGCCATGAAGAAAGAGATCCAAGGCGTCGCCAACGAAGTCTCCTACCTAG
AGTCAGAGAAGTCCACTCTCATCGCAGAAATCGAAAACCTTAGGAGACAG
CTAGAAGATCTGATGAGAAGGAGGTCTGAGATGGAGTCCGACATCAGTGG
GGCTAAAGGGGATCTGGACGCTGCGCTGGGCGCCTTGGACGGTCTTCAAG
ACGAGGTGGCTCAGGCTGAGGATGAGATGAGTTCCGCTGCTCAAGGTCCT
GGCCAGGCTACGACCATCGAGGAGCAGATCGACGTGGTGCAGGTGGAGCG
CCTGCGGGCCGACCTGAACGACTCCCTGGCGGCCCTGCGCGGAGAGTTCG
AGCAGCTGGCGTCACAGGGCATCGCTGACGTGGAGGGAGACTGGGAGGCC
AAGCTGAGAGAGCTCCAGGCAGAAATCGAAAGGCTGAAGGCTCTGCTGGA
GGAACTGCGCATGCAGATCTCTGCTCTGAGGGCAGAACTGTCGGCCATCT
TGGCTGAGGCAGAGCAGATCAACGCAACGAACATCAGTCTTGAGCGTGAC
CTCAAGACCCTCCGGGAGACCATCCGTACGAGGCTGGAGGACTACAAGCT
CACCATCGCAGACTTGAACACAGAGGCGCAGAGTATTGACGGAGAGATCC
AGTCTGTGGTCGCCCAGTACAACGACCTGCTGAACAAGAAGCTGGCGTTG
GAGAAGGAAGTGATCGACTATGAGCAGCTCGTCGGTAGCGAGAACAACAG
GCTCAAAGTCCAAGGAGGAGGCTACGCCATCCAGCAGATCTCCATCGGCT
CAGGCTCCAGCAGTGGAGGCCTTGGAGGCGGCATGGGCTTCGGAGGTGGC
GGCGGCGGCTTCGGAGGCGGCGGCGGCGGCTTCGGAGGCGGCGGCGGCGG
CTTCGGAGGTGGCGGCGGCGGCTTCGGAGGTGGCGGCGGCGGCGGCGGTG
GATTCAGCAAAGGCGGCGGCGGAGGCGGTGGATTCAGTCGAGGAGGAGGA
GGAGGAGGCGGTTTCTCCAAGGGAGGCGGAGGGTTCTCCAAGGGAGGAGG
CATCAAGTTTAATTTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000137 | genome | Sc0000137:311204..319060 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97121_cuf5 |
| Biotype | protein_coding |
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