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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97138_cuf2 >transcript:BL97138_cuf2-protein ID=transcript:BL97138_cuf2-protein|Name=transcript:BL97138_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=597bp
MTTNSYQDVAEFTCHAGYRLQGAPTATCQADSQWTSREPTCTFCQDPLGV
ESRDIPDSAITASSEYEGNDIRRSYHGRLNTPDGRTAWCSERGSVVAGEW
LQVDLGSATIIYGVITQGRPTFDQWVTSYKLQFSWDESSWTSYKDSDGSD
KVLAGNTDATTAVTQLVDPQVTTRYVRFVVQTWQRHICMRVEVLGCMNAD
CLEPLGMEAGYISDRSITASSAPHGGLKPYRGRLNTVIGGSWTGANAIDE
WLQVDLGGAVKVDGVITQGRLNHNQWVTSYELRFSWDEISWTTYKDSDGS
DKVFTGNTDRNTPVTHVLXNKNVGVGGWVGGRNEAGQWLQVDLGGAAKVQ
GVITQGRSNADHWVRSYKLRFSWDEISWTTYKDSDGSDKVFTGNSDRNTP
VTHILRPTVSTRYVRWVVQTWNRHLGMRVEVLGCMKTGCRSPLGMESRHV
LDERITVSSELDHEVCRKSLGRLNQAGNVGWCAGTNTAGEWLQVDLGFAM
VSGVITQGRDTQPNPIQYVTSYKLLFSNDGDSWTTNKDLDGSDKVFPGNS
DATTPVINVLHPPVTTRYLRVVALTWHTWISMRMEVLGCYSVGKADY Run BLAST on NCBI mRNA from alignment at Sc0000332:31933..40038- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97138_cuf2 ID=transcript:BL97138_cuf2|Name=transcript:BL97138_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=8106bp|location=Sequence derived from alignment at Sc0000332:31933..40038- (Branchiostoma lanceolatum)
AAACGTGAATGTTCAGTTGACGCCCGTGCTTATTCGCTGTTACAATATCC
TTTTCCCTCACAGCATGTCCTCGTCTGACGACCCCTACAGACGGGAATAT
GACCACTAATTCCTACCAGGACGTGGCGGAATTCACCTGTCATGCAGGTT
ACAGACTCCAGGGGGCTCCCACTGCAACCTGCCAAGCTGATAGCCAGTGG
ACCTCAAGAGAGCCCACTTGTACTTGTAAGCTACTTTTCATACATATACA
AACACATTCAACATACCATGGGTACACCTGACGTCAACTAAAGCAGCGCT
ACTAAACCTTAGATCTTGTATCGGCGCCATTAATTTACGCAACTGGTGCT
TGCAACTTAGACACTACATGATAACTGTCGTATAAACAAGACAAAATCAA
TTCTCGAAAGAATGATAAGTGTCCGATACTTACAAGTTACATAAATATGC
GTGCATCAGAAGAGGTTAACGTATCTTCATAGAGGTAGCTTCTCATTCAT
TCATAGAATAGCAGAAACCCTTCAATTGACGTTTGATAGTTACCAAGACC
TGCCGCTCTCAGCCACAGGGTACGTTCTGCGATAGAGTCGAAGAATGTTT
CTAAAATATGATATCATGCCCAACTATTGATGATAAACATTAACATGTTA
TTACTGATAGTTTGTCAGGATCCATTGGGGGTGGAGTCCAGAGACATCCC
GGACAGCGCCATCACGGCATCATCTGAATATGAGGGTAATGACATCCGTC
GATCCTACCATGGCAGGCTGAATACCCCCGACGGTCGCACGGCCTGGTGT
TCAGAGCGCGGATCAGTTGTAGCGGGTGAATGGCTTCAGGTTCGGAATGT
TATTTTTACTAAGCACGAATCCGGAGTATGTAGGGTAAACTAGGTAAATT
CCGTAAGGCTCCATTAACTCATGTATAAACGGATCGGGTAGTGTATGATC
ACTCTATCTTATTTACATCACTTGAAGGTATTTCAAGACTGATGTCACGT
TGAGATGCACCCATTTGTGGTTTAATTTGTACAGATCTATGTATTGCTAC
TGCAAATATGGAACAAGGAGAAAGTTATGTATATACATGTAATGCATTAA
ATATGCATTTGATCAAATGACTCAACGATGCTAAATTGGATTGTAAGGCG
GATTGTTATAGATTGATTGTAGCATTGTATTTAAAGTAGTGTTGCGTACA
TTTCCATTGCCTGTATCTATCTGTCCATAAATGTCGACTCTCCAATATCA
GCTACGCTGCCTCCAGAGTCGGTGTAATGTATTGCAGCATTTGACAATAA
ATAGATAGGAGAAAGTTTGGGACACCGATATCTATGCTTGTACTGCTTGT
GCAGGTTGACTTGGGCAGTGCAACAATAATCTACGGAGTCATCACTCAGG
GTCGGCCGACCTTTGACCAGTGGGTGACGTCATACAAGCTTCAGTTCAGC
TGGGACGAAAGCTCCTGGACATCCTACAAGGACTCTGATGGATCAGATAA
GGTACTAATTTTACCACAGTGTCAACCAGATTGTTACGTATAGGCATTTT
TTGGACGGATGTTCCAAGTAAAGACTTGTGAACTTTTTTGATGACACTAT
CAGCTGCATCTGCTTCAAAATGAGGAGTCCAATAGTGAACATCCAAGCAC
GATCTTTTCTTGAAATAGGTTTTGGCAGGGAACACGGATGCAACGACTGC
GGTAACCCAGCTTGTCGACCCACAAGTCACCACGAGATACGTCCGTTTCG
TTGTCCAGACCTGGCAACGCCATATCTGCATGAGGGTGGAGGTCCTGGGC
TGTATGAACGCTGGTGAGTATACGTAACCTACGACATATCATCATGGGTT
ATTCTATCAAAGCAGGGATGGTAACGATTTCTAAGAAATATTGAGTATCA
GTGCAAACAACGTGCACGCGGGAAATTTCTACGATTCTTAAACTGACGTA
ACGCACTAAATCGGTGAGCTATGTGGACGAAACTGCATATTGACATACAT
TGCGAAAATCAAATTATATTCTACATAGATCGATGTTTCTATTACTTTCA
AAATGTGCCTTAAACATGGTCAACATTATCATGGCACTTGCAGCCATTGT
AAAATGATGTTGGCCTCCCTATCAGTGGACTGACGCACGTATGAATTAAT
GAAACTATGTACTGAAAGGGTACTTTTGTGCGATGATATCAGTACATTTA
GATTAGCTAAGTATAATCTCAAGACCTACAGACGTGTAATGTTGCATCCA
ACAGTTGGTGTGACTTATCATCAAACATTTTTTGAAATCAAATGTTTGAA
TCAAGAGCCAATCTAAGGAGCAATGTTGAAAGTAGTGATTGAAATATAAA
ATATTAAAAAGGACCGATGGCATTGTCATTCGTAAGAAATACCTAGTACA
TGTAGAAACAAAGATAGAAACAAAGATAAGAGAATGCAGACTTCCAAATT
GTATTTGCCATCCATTTGTATAGTGTTTACTATTATGTTCGGTTTTAATA
TTAGCATTTTTATCATATTATTCTTGTTTTCTCTCGTGTTCATCAAACCA
TGTATTGTCTCTTATGCATTTATCCCCCTGGGGAATGAAATGCAATAAAG
ATTATCATTATCATTATCATTCCATCAACTTGCACTTCTTGTCTATAAGA
CTGCTTAGAACCGTTGGGGATGGAGGCGGGATACATCTCGGATAGGAGCA
TCACGGCATCGTCAGCCCCCCACGGCGGTCTAAAGCCGTACCGCGGCCGG
CTGAACACTGTGATTGGCGGATCCTGGACTGGAGCTAATGCTATAGACGA
GTGGCTACAGGTAGGAAACATAGCATTACATCAATAGAGGCTCGCACTTG
CCCTCCCATTGGCGACCCTTTGTATCTAACTTTTGAAAACAAACATGATC
AATTTGACAACAATTGTTTATGAAATATTATGTTACTGTAATTGGTAAAG
TTGATAACTTATCCTTCTGGCAATTTGTTTGTCTCTTTAATGAACCTGCA
TGGGAATGTTGATATCGTATGAAAATTATATCGAGAATGCGGCCTTCATC
ATATGGCACCAAGATTCATCAACTGCAACTGCGAAGAGTTAGCGAGGTTA
AGAAATAGAATTGTATCCTGTGCAGGTTGACTTGGGCGGTGCAGTTAAGG
TAGACGGAGTCATCACACAGGGTCGGCTGAATCATAACCAGTGGGTGACG
TCATACGAGCTGCGGTTCAGCTGGGACGAAATCTCCTGGACAACCTACAA
GGACTCTGATGGATCAGACAAGGTACTGTCGTCTGGTCTGATTCTATTGT
ACATCAACCAATTTACATTTTCATGCAAAGATAAAACTATCATATTTTGC
CGATGGATGTCATTCATGAAATAACCATAATATTAGTTGCTGTATACATA
TAAATGGGAATTCAAACCTTAGAAGTTAAGGGCAGAACTAAAATTACATT
GCTGTGTTAATGTTAGGAGCTTTCTGTCTACATTCACAACGTCCTAGCTA
GTGACATTGAACTAGTCTTCAAATAAGTTGACAATATCGTATGCGACTGC
TTCTAAAGGAGAAGCATAGTCACAATGTCCTAGCCCCAACATGACCGAAG
TTATCTTAAAATCAGGTCTTCACGGGGAACACGGACCGAAATACCCCGGT
TACTCACGTGCTACNCAACAAGAATGTAGGGGTGGGAGGCTGGGTTGGAG
GACGTAACGAGGCAGGCCAATGGCTACAGGTGAATTCCTGAGTACCTAAA
GATGAAATGCATGTTGGCATCCAGGAACATGACAAGCGGAATATTTAGAA
CATTTAAGCTATTCAAAAAGATCAATTTGGCTTATTTTATCAGACTTTGT
TTTTCCCGGAGTAATCATAACTCTTGGCAAGTTATATAAGGATTCATCAG
TTGTTACTTATACCCGAATAGATATGGCCGTGGTCCGTGGTCATTGGCAT
CCTTTTCCAATTGCTTTAAAAACACAGATTCGAAAATTATGTGTTGTTGA
TATTATCATACGCCAAAAAAAAAATTACTCAAGCAACTGGATACAATTTT
GAAACAGTCAGGCGCTATCTTTCGTCAGTGACTAAGGAAAGATCTGGTAG
AACCAGGTTTTATACCTAAACTCTGTTTCGACGAAAGTGATTAACGAAAG
ATTTGGTAGAACCAGGTTTTATACCTAAACTCTGTTTCAAAATTAATTGC
TTCCAGTTGCTTGAGTAACTATTTTGGCGTATCTCATTACCTGGATGGTC
ATCAACGAATATTATCATATCCGTTTTAGTTGCATCGCAATTTGCCATAT
TTTGCCAAAAATGTAAGCTGGAAGTCAATGTTTTCTGCACAGGTTGACTT
GGGCGGTGCGGCGAAGGTACAAGGGGTCATTACTCAGGGCCGGTCTAATG
CTGACCACTGGGTGAGGTCATACAAGCTGCGGTTCAGCTGGGACGAAATC
TCCTGGACAACCTACAAGGACTCTGATGGATCAGATAAGGTACTGTCATC
TAGTCTGACTCTATTCCAGTATTTGACACACTTTATGAAAGAAAGATAGA
CAGTATCAAGTTTTCTCAACGAATATCTTCAGCAATGGTCAGTACCTGCG
CTGAACAGTTTGTGGAAAACGGAAGATTTACAAGACTAGTGTCCATATCA
GGAGGGAGTGCTGTTCGTGGCTCTTCAAAGTGGGCAACTCAAGCAGCAGT
GTGCAAGGGAGAAGCCCGAATCAAAATGACTGATGTTTTGTTGAAATCAG
GTCTTCACGGGGAACTCGGACCGCAATACTCCAGTAACGCACATCCTCCG
CCCGACGGTTTCTACCAGATACGTCCGCTGGGTTGTCCAGACATGGAACC
GCCATTTAGGCATGCGAGTGGAGGTCCTGGGCTGTATGAAGACTGGTGAG
TCAGTTTACTCAAAAAATAAAATCACTGATAGCTGTTTCGTTCAAGGAGT
TAGGGTATAGCTTGAAGATTGATTCAAACGCCAGTGAATGGTGTAAATGT
CAAGACACGCATTCGAATCATTTTCATCTGTGTCTTACGATTATGTTCCT
GTTTGTGCTCTCTCGAAAGCTCTGAATAGAACTCTAGAATGAATATAAAT
ATCCAGCAAAGACTGAACAAGTATTAGATTAAGTCATCCAATACTACTTT
GCACATGTAGGGATCCTAGAGATGTTTTAAGTAATAGAAGTTGTCACCAT
GCGTTATATTCTAGACAATCATCGTGCGAGAAAGTTATAACTAACATCAT
GAAATACATCATGTTGTATGTTTGAAAGGTTGCCGATCACCGTTGGGAAT
GGAGTCTCGACATGTCCTGGATGAGAGGATCACTGTATCGTCTGAATTAG
ATCATGAAGTGTGTAGGAAGAGTCTAGGCCGGCTAAACCAGGCGGGTAAT
GTGGGCTGGTGTGCGGGGACTAACACCGCCGGCGAGTGGCTACAGGTACA
ATAAAAACATACAAGTGTTGACCGTAGAAGCATCCTCATTAGACAGCTTT
AAACGATGCATGCAGTTAGACATGCGAAGTCGTTCGGTGTAATACAACCA
GCTGCTATCGCGCCGCGTGCCTGCGAAGCTGGTGTGTTACGCCGAAGGGC
GGTTATACCAGCTACATAGATACAGATACAGACCTCAAGTATAATTTTCT
ACATACAAAAATGTGCTGTACGCTAAAAAGTGAGTGCTGTATTTATCAAA
GACCATATATGCAAATGAGATGATTTACTGGTTTAGTTGAAGATAAAACG
AAATGGTAAAATGGCATTGTAACATGCATTTCTAACAAAAGCACAGTTGA
TATCATATCTAATGAAAAAGGGTGCTAAATCAGTAAATGTTGTACCCAAT
TTTGTTAACAAAAGTCCAAATTGTGGTAGAAATGCCAATCTGCTGTACAG
AATACTAGTAATTTTTTTTGGATATGGAAGAAAATATTTGTTTTTGGTAT
AGGTTGACCTTGGCTTTGCGATGGTTTCTGGAGTCATAACGCAAGGTCGT
GACACCCAACCAAATCCAATTCAGTATGTGACGTCATACAAGCTCCTGTT
CAGCAATGACGGAGATTCATGGACAACAAACAAGGACCTGGATGGCTCGG
ATAAGGTAGACTTCTAAACACTAACATTTCTCCCGTAAAACGTGCAAATT
ACCTACAGCAACCGAGCATTCGGGTTCCAAGTGTAGTCATAATGCAAAAT
GTAACGTTACGCGAAACTAAATGATATAAGAAGAGAGGAAGGTAGCCCAC
ATCTCCTCTTCCTACATTAGTGTTGCATGCATGATAGATGTACATTGGGT
ATATGTGACATAAGTGCAAAGACATACAGTGGTCATCGCTGTGGTACTAA
TAGTCAAATATATCAACAAGTTATGATTTGTCGTCGTGAGGTGAGATAAC
TTTATTGATTGTAAACCGTCGATGGTTATCCATGTCTCACCAGCTATTGT
TGTCCCTTTGACCAGGTGTTCCCAGGTAATAGCGACGCGACTACTCCCGT
TATCAATGTCCTTCACCCTCCAGTCACTACCAGGTACCTCCGCGTGGTGG
CGCTAACCTGGCACACCTGGATCAGCATGAGGATGGAGGTCCTGGGGTGC
TATAGTGTTGGTAAAGCGGATTATTGAACAGTTTAGATTTTCTGGGAAGC
CGCGTTTTGTGGATGACCACCGCAAATGTGAGTGTACAGAAAGAGAGAAG
ATGTCTAATTTCTTAATCTAATTGATGGCAAAGGTTTACGTAAATGACAC
TCAGAGTAGTCCATCACACCATGAACAATAAATCCTCTACCATGGCATTG
TTCTTTAATCCCCAGGAGGTTTCGGGTATGACCGTATGTCCTTGTTAAAT
CATTTTGTGGTCTGGTATCCCGACGCTAATCATATACGTGGATCATGATA
GTCAAGTAAAAGGCCAAAGTTGTCCTCGGAATTCGGATACGCTGACATGA
TAGGAGAGCACATATATTCTTTTCACATTTCCAATAATTAGACAAAATGA
TCATATGTTACGAGACAGAAGCTGTAAACAAAGTCTGATGAAAAGTGAGT
TCAAAGTTACAATTATCATAATTAATGCATGTGAGCCTGGCGTTCTGTTT
ATAGATGCTAGCTTTTATTAAGTACTGTTAGATGTATGCTGCCCCTACGG
CTGACTAAGCTATGGGAGAGAGTGAGTGATGAGTGAGTGAGTTAGTTAGA
TGTATGTCATGGAAAATCTAATATGTAAATTGTGGGGAAGTGATTGGCTG
TTGGTATTCGAATGTCGTCGTTGAACTTTGCATGTATTTCTACCTTTCCC
TTCAGTGGTATTTGTAGACCATAGGAAACGTGCGACAGATCTCTTGAAAG
CTTATGGTAAAATACTTATCATATTCTCTCAAAATCAACTTTTATACATC
GAACCAGTAAAATTGTAAACCATAGAGAGCCTAATTTGATGACATCATAT
ACATCCACCGTTATCTTGCTAACGAAACAACTTTCACTAGCGGATTTCAA
CATTTTCGGAATGGGGAAACTCAGTGAACGGCTCATTATGGGGTTTACAA
AATTTCAACGGAATATTTCATATTCATACTTCAGAGTGTTGACACGTCAG
AAACCAATCGCTTTATTTTCTGTATGATTATACTGAAATAATCAGTACCA
ATGGATAAAAACCCACAAATCTTGATTGTCTTTTGAGGGACCTATTTTCA
GCTATTTCTCTCATAGGTGTAGTTTTGAGCGTCGAATGCACATGCAGGTA
CTCATTTTACACATTATACCATAACGTTTTCGTAACCTTTGACGTGTCTG
GATAGTTTATACCTATTTCCAAACCAACGGCAACATACTGTATTGGCTAT
TCGTTATGACTTAACTTAATGGAGCATTTTTGACTGACAGGTGTGTGTCT
GACGTCACGTACGGTGTTTTCTTATCAGATGATAACTTGTGTTAGGTGTG
TTTCTCTTTTTTCCACTGACTGACACGGCCTTACTGGAATTGGTGATGTA
TTACGTATGTATTCCTTGTTGGTTGTAAGTTTATTTGAGCCACAATCTAG
ACAATAATAAATAATTATACACTGTCCATAAGCTTACATGTGGAAGCATT
AAACAC Coding sequence (CDS) from alignment at Sc0000332:31933..40038- >transcript:BL97138_cuf2 ID=transcript:BL97138_cuf2|Name=transcript:BL97138_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1794bp|location=Sequence derived from alignment at Sc0000332:31933..40038- (Branchiostoma lanceolatum)
ATGACCACTAATTCCTACCAGGACGTGGCGGAATTCACCTGTCATGCAGG
TTACAGACTCCAGGGGGCTCCCACTGCAACCTGCCAAGCTGATAGCCAGT
GGACCTCAAGAGAGCCCACTTGTACTTTTTGTCAGGATCCATTGGGGGTG
GAGTCCAGAGACATCCCGGACAGCGCCATCACGGCATCATCTGAATATGA
GGGTAATGACATCCGTCGATCCTACCATGGCAGGCTGAATACCCCCGACG
GTCGCACGGCCTGGTGTTCAGAGCGCGGATCAGTTGTAGCGGGTGAATGG
CTTCAGGTTGACTTGGGCAGTGCAACAATAATCTACGGAGTCATCACTCA
GGGTCGGCCGACCTTTGACCAGTGGGTGACGTCATACAAGCTTCAGTTCA
GCTGGGACGAAAGCTCCTGGACATCCTACAAGGACTCTGATGGATCAGAT
AAGGTTTTGGCAGGGAACACGGATGCAACGACTGCGGTAACCCAGCTTGT
CGACCCACAAGTCACCACGAGATACGTCCGTTTCGTTGTCCAGACCTGGC
AACGCCATATCTGCATGAGGGTGGAGGTCCTGGGCTGTATGAACGCTGAC
TGCTTAGAACCGTTGGGGATGGAGGCGGGATACATCTCGGATAGGAGCAT
CACGGCATCGTCAGCCCCCCACGGCGGTCTAAAGCCGTACCGCGGCCGGC
TGAACACTGTGATTGGCGGATCCTGGACTGGAGCTAATGCTATAGACGAG
TGGCTACAGGTTGACTTGGGCGGTGCAGTTAAGGTAGACGGAGTCATCAC
ACAGGGTCGGCTGAATCATAACCAGTGGGTGACGTCATACGAGCTGCGGT
TCAGCTGGGACGAAATCTCCTGGACAACCTACAAGGACTCTGATGGATCA
GACAAGGTCTTCACGGGGAACACGGACCGAAATACCCCGGTTACTCACGT
GCTACNCAACAAGAATGTAGGGGTGGGAGGCTGGGTTGGAGGACGTAACG
AGGCAGGCCAATGGCTACAGGTTGACTTGGGCGGTGCGGCGAAGGTACAA
GGGGTCATTACTCAGGGCCGGTCTAATGCTGACCACTGGGTGAGGTCATA
CAAGCTGCGGTTCAGCTGGGACGAAATCTCCTGGACAACCTACAAGGACT
CTGATGGATCAGATAAGGTCTTCACGGGGAACTCGGACCGCAATACTCCA
GTAACGCACATCCTCCGCCCGACGGTTTCTACCAGATACGTCCGCTGGGT
TGTCCAGACATGGAACCGCCATTTAGGCATGCGAGTGGAGGTCCTGGGCT
GTATGAAGACTGGTTGCCGATCACCGTTGGGAATGGAGTCTCGACATGTC
CTGGATGAGAGGATCACTGTATCGTCTGAATTAGATCATGAAGTGTGTAG
GAAGAGTCTAGGCCGGCTAAACCAGGCGGGTAATGTGGGCTGGTGTGCGG
GGACTAACACCGCCGGCGAGTGGCTACAGGTTGACCTTGGCTTTGCGATG
GTTTCTGGAGTCATAACGCAAGGTCGTGACACCCAACCAAATCCAATTCA
GTATGTGACGTCATACAAGCTCCTGTTCAGCAATGACGGAGATTCATGGA
CAACAAACAAGGACCTGGATGGCTCGGATAAGGTGTTCCCAGGTAATAGC
GACGCGACTACTCCCGTTATCAATGTCCTTCACCCTCCAGTCACTACCAG
GTACCTCCGCGTGGTGGCGCTAACCTGGCACACCTGGATCAGCATGAGGA
TGGAGGTCCTGGGGTGCTATAGTGTTGGTAAAGCGGATTATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000332 | genome | Sc0000332:31933..40038 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97138_cuf2 |
| Biotype | protein_coding |
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