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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97171_cuf3 >transcript:BL97171_cuf3-protein ID=transcript:BL97171_cuf3-protein|Name=transcript:BL97171_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=406bp
SNLLEIVVYSNVRQLYTNIKAARMVQATPIKQLLNKKWTSFVRGWFLAFA
LAYLVHIIVFTICCWYRPLRTVVKVVSDGTDNVTVTVVEKVPVFESYATP
WHQARLGGEMFTLLVVLVILWCEISDMIHVRPEACGILNGVGNGPFRFLS
LLYSCAVLILLVFRLTDHPREDVVMSLALVFGWMLLLYFSRGSEALGPFT
VIIQQILAGDIVRFFAVYLICLLGYTAAFYITFEQAEEYLEQFRDFEHTM
LTLFKLTLGVEDVTVLDKAPNPAMAVALFVSFLIFSFLLMTNLLIGMMGE
TLSRVSEEKRDLWKLQRACLILLFERRLPSCLRRPAGEYVDVPGFDPNTR
YLRVKILGELEARSEVKFKRAPARQRPSFARSAAGSTKSAKMRAMVDYWR
KQTTSL Run BLAST on NCBI mRNA from alignment at Sc0000028:1601224..1606985+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97171_cuf3 ID=transcript:BL97171_cuf3|Name=transcript:BL97171_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=5762bp|location=Sequence derived from alignment at Sc0000028:1601224..1606985+ (Branchiostoma lanceolatum)
TAGTAATTTGCTGGAGATCGTGGTGTACAGCAACGTGCGCCAGCTCTACA
CTAACATCAAGGTGAATACGACAACAGAACTAAATCCGTAAATAGGTCCA
TCAAGTTGGTAGATCATAGGTTTTGTAAACTATTACTTGTAAACAACTCC
GTCTTCTCAACTGCCAATGTTTCGGTAGCCATTCTCTCACCGGCCGTAGT
GGCACTGCGGTGAAAGGAATCCGGTCCTGAACGTGGCTCAGCTTATATCC
TTCCAGGTCCAGTGGTAACTCCACCATTATTGACACATGTGTTCACACTG
ATAGTAGAGGGACTATCGAAACGTTGGCAGGTAAAAAGAAGAATTTGGTA
GTGTACAAGACCTTGTGGGTTATAATATCTGAAGAACGCCATAGAATTGG
TCGAAATTGCATAGATTCTGAATTAGCTATGAGCTCAACAGCAAATCATA
TTCTATTTCCTACCATCACGTTTGTAGACTAGTTCATTTTTGTAGGGTAA
AAGAGCCTGTTTGTAGTCATCGGCCGAATCGATAGGGTTTGGACAACATG
GACTTTTATTCAAACATTCGTGATCATTGCCATTCCAGGCTGCACGAATG
GTCCAAGCCACGCCTATAAAACAGCTGCTCAACAAGAAGTGGACGAGTTT
CGTGCGGGGCTGGTTCCTGGCTTTCGCGCTGGCTTACCTTGTTCACATCA
TCGTGTTCACCATCTGCTGCTGGTACAGGCCACTGCGGACTGTGGTAAAG
GTGGTCAGCGACGGGACCGACAACGTCACAGTCACAGTGGTGGAGAAAGT
ACCCGTGTTTGTAAGTTTTATCCGTCATAAAAGTTATATTATGGTTCTAG
GTGCTAGTAGGTCATAGATTAATGACATTCATCATCATCATCCACCGTGC
TCATCATCTGAAGTTTTTTTTAGAATACATACAGACGTATAATTCCAATA
TGCCGATGAAGGTTAGACATCCATGTGATAAGATACACTAGGTACCAGCT
ACTCAAGCAACTGGATACATTTTGGAATACCGTTAGTCAGTGACTGAAGT
AAAGGTCTGACTGTCTGAGGTTCACCAGGTTTGAAATGATAGATATTTAT
CTTGCGTATACTTCCAAAATGTTGTTGTCCTTTAATTTAAAAGACATTTT
CATAGCATAGATGAGACCAACATTTTTCTACGCTATTTTCATGACTGATT
AGATAATGTTAAAGCAGATCTCTCGGGCTGAAGTGCAACCATTTCTCTTT
TCAGGAGTCGTACGCCACACCGTGGCACCAGGCGCGACTTGGCGGGGAGA
TGTTCACACTGCTGGTCGTACTGGTCATCCTGTGGTGCGAGGTAAATAAT
CTGTCATGTCAGAGCTTTACTTACGCATTTGCTTCCCCGTGTTCTTACTA
CGAATGCTACATCAGGCATGGTCTTTGTTTTCAGATATCTGACATGATCC
ATGTGAGACCAGAAGCTTGCGGGATCCTCAACGGAGTCGGCAACGGACCT
TTCCGTTTCCTTAGGTACTATACAAGATATGTTATATATCCTTCCTACTA
CTTCTACAAGCTAGACTTGAAATATGTCAAGATTTCAACTGCTAAATCCT
GCCGCTAAATGTCTCTTATCGGTTCCCGAACGATTTACTTTATTATATGA
CCATTTTGATGCATATGGCAGTTTAATCAAATGGGTACTAGAAAGCCATT
TTGGTACCAATAGTCCAAAGCCTTTGATACTAACGTTAGATTTCAACTTA
AATTTATCATCATATCATAGTGTCCGTTTTAAACCTAGTCCCTTCAAGCT
TTCAGTACAAAGACAGTAAGAGCAAAATGTACGATTTTTCATCTATTCCA
GCCTGCTATACAGTTGCGCTGTGCTGATCCTATTGGTGTTCCGGCTGACT
GACCATCCCCGGGAGGATGTGGTCATGTCGCTGGCCCTGGTGTTCGGCTG
GATGTTGCTTCTCTACTTCTCACGGGGCAGCGAAGCTCTGGGTCCATTCA
CAGTCATTATCCAACAGGTGGGTATGGCGTACATATGTATGTTCATGCAA
TGCAATGTAGAAGTGGTTGTGGTGATGTCCTTGGTGCTGATGTTCGGCTG
GATGTTTCTGTTGTACTGCGTACGAGGAAACAACGCTTTCCGGCCGTTCA
CTGTCATTATTCTTCACGTAGACGTAACTGGAAACCTAGATTCATATCTC
ACAACCTCAAAGATATCTACATGGCCGACGTTTTGGTACTTCGTCAGTTC
CCTTCCTCCTGTCCTGAGTGGAATAACAAGGTTCTCTATTTCTACTTCCA
GATTCTGGCAGGAGACATCGTTCGCTTCTTCGCCGTCTACCTTATCTGCC
TGCTGGGATATACCGCAGGTAGGTAAACAGATTATTCAATGACGTTTTAT
TGATATTCACATAGTTTAGTAACCTCCTTGTAGCGTCGTCCTGTACAATT
CGCTACATTTTTATTGTGGCCGTATCTACGAGAAATAACCCAATTATTGT
TGAGCCCATCCCTCTAGCTCCTTCCATCGTCTTTTACCTCCCTATCCAAA
GTCAAATACGTTTATACATGATTACCTATTATCCCAAAGATACATCGTCT
TGCCCAGTGCATCCAGGAATCGAACCCGTGACTTCTACATGCAGTTCGAA
TCGCGTGTACGCTAGCCTAACCACCATACCATAGAGGCTAAAAAAAGTTA
AGGTGACACTTTATCTATTTTTCTTAGCCTTCTACATCACGTTTGAGCAG
GCGGAGGAGTACCTGGAACAGTTCCGAGACTTCGAGCACACGATGCTGAC
TCTGTTCAAACTCACGCTGGGCGTGGAGGACGTCACGGTTCTGGACAAGG
CCCCCAACCCCGCCATGGCGGTCGCATTGTTCGTCAGCTTCCTCATCTTC
TCCTTCCTCTTGATGACGAACCTGCTCATCGGCATGATGGGAGAGACGCT
GTCCAGGGTGTCCGAGGAGAAGAGGGACCTTTGGAAACTACAAGTACGTT
GGTGTCTTACTTATTAGTCCTTATGTCGGTGAATGGCTTTATACATAGAT
TTGAAGAAATGAGTTGGAATTGGTAAGGATAAGTGTGCTGGGTTCTTTAA
CGTACATCGGGATGATGGGAGAGACGCTCTCGAGGGTGTCCGAGGAGAAG
AGGGATCTATGGAAGCTGCAGGTTCTTAGGCTTTATTCACTAGTATTGGT
CAAATGAGGAAATGTGTATTGAGAGTTGGGTTCTTTCATGTTGATCGGGA
TGGTGTGAGGGTATCGTAGGAGAAAAGATACCACTAGAAGCTGCAGGTAG
TAAGGGCATGATAATTGTACTTTGACGCTGATGAGGAAAAGATAGAAAAA
AATGAGCTGGGTTCTTTAACGTGGAATTGGGATGGAGGGAGAGACGCCAG
GGTGTCGTAGGCGAAACGGAACCTGTGGAGGCTGCAAGTACGTGGGGCTT
GCTGATTAGCTGTAGCGGTAGTGAGGGAAAGGTAATATAGCTAAAGATAA
GTGTGTTGGGTTCTTAAGCGTCCATCGGGATGATGGGAAAGACGCTGTCA
AGGGTTTCGGATGAAAAATGAGACCTCTCGAATCCGCAGGTATGTAGGAA
TCAGTGAATGAATATACGGCAAATTTAGTGTCTGTGAGATAACAGTTTTG
CAACAAGCCATTCAACAAATCTGTAATTGGTTTTATCAATGTTTGACCAA
TAGTATATTCTATCCATCTTAAAGCGTGCCTGTCTGATCCTGCTGTTCGA
GCGGCGGCTGCCGAGCTGCCTGCGGCGGCCAGCGGGGGAGTACGTGGACG
TGCCCGGGTTCGACCCCAACACAAGATACCTCAGGTCAGAGCTCTTACAT
TCATCTGGTGTAAGATGGACCAAATCAAGTCCAACAAGACACAAGATATA
TACAAACACACGGTTGAAAAGTTTATTGTCAAGTTTGATCTTGGATACAA
ATAGCGTATTTGAAGATAATGATAACTTAGGTAATTTGAAAAAAAAGTCG
TAATAGTACATTAGTTAATATTTCATCATCTTCATCATCATCATCATCAT
CGTCATCATCATCAACATCATCATCGCCGCTTTCATCTGTTGACGATGCG
GGCCACCATTGCATCTATATTCGGAAATATCATCATTCAGAATGAAGTCT
ATCAAATTCTTCCAAGCCATTTTGTGTTTCTGTTGATGATCTGTTGATGT
GACGCCCTATTTGACGCCATATATCAACTGACCGTCTACTTAGTGTAGTT
TTTATTAGTGTAGCATATAATGCAATAATATACATAATTACACCCATTGT
AAATAAGCAAATGATGTGGTACCAGTATCAATCAAACAATCCATGAATCC
ATATATCTATCACATATCTATTTTTCCGTTATTCCGTGTTTCAGGGTGAA
GATTCTGGGCGAGCTGGAGGCGCGGAGCGAGGTGAAGTTTAAGCGGGCCC
CGGCGAGACAGCGCCCGTCGTTCGCCCGGTCCGCGGCCGGCTCCACCAAG
TCCGCCAAGATGCGCGCCATGGTCGACTACTGGCGCAAACAGACGACCAG
TCTATAAAATAAACACTTATTGACTACCACCAGAACTAGAACAAATAGAC
TCAAGAACAGTCCAATCCTTTATATGACCCGTCTTTTAAATGAACAACGA
TATCTTAACTTACGTATACAGAACAGTTCCGTTTTCCCATTCTTTACATT
CTGTACATTTTAACTGTTGCGAAGAAGTCGTGGCTTCACACATTAATGTA
GACCTATGCTGATCTGACCAGTTGTCTTAAGTGTGCGTAAGTGTCCTTCA
TAGTCATAATATGTATATCGTGTAAATACGTAATGCTACAACGGAGGTTG
GTTCTGAAAATATTATTGTTTCACGGTTTATTAAGAGACATATCCAACAA
TTATAATAATCACAGTTTCTGTAGCAACTAAGCAAATGGATGAATCATGA
ATTATAACTATTGTTTCACGGTTGATTAAGAGACATAACCAACAATTACT
AGTATAATAATTACAGTTTCTGTAGCAACTAAGCAAATGGATGAATCATG
AATACACAGCGATATTTTCTATGTACTGTTGTCATGTCCGACTCCTATAT
CCATGTACATAGGTCAATTTCTCCATAAATCATTCGAAAAGCGAGACAGA
ATTACCTATACATGACTAACGGTTAACGTTATATATTGCAACAAATACAC
TGGTTTCGAAAATATTTTGTTCTTAGAATTGTAGGATAGATTAGCCTTGT
AGAACAGATTGTTGATTTCATGCCATACATTGTACCATGTACGATTGTTG
AGCAATAAAGTTCACTTCACTTCACTTCACTTGAATAATATACATATATG
TACTATTGGTTTAGCAAGGCCAACTCCTCGTACTGAACGTTTCATACCCT
AATCTACTCCCGTGCTCTGGATGTAATTGCATTGGCGCTTTCGTTTTCCA
TGAGAGACAACCCTTTTGAAACTAAAAGGCTTTTCAATTATGCATCAACA
TATGGATAGGTCTACGTGTGTTTTGACGAGTACCCCTACCCAATGCTAAC
ACAAACGACCTTCATGCCACTGTGTGACATACTGACGCCCATGGTTGTTA
TTTAATTAGTGCCATCTTTGTATAAGATGAAAGCTCCTGTATTTTCACAA
CATTAGTTCATGCGCTAAAACAACAGTAGCTAATTGAACTATTAGCAAAC
AACCTCGTCTTGACTTAGCCTTCTATTGAGGACTATTTCAATACATCATG
AATTGTCTTAAC Coding sequence (CDS) from alignment at Sc0000028:1601224..1606985+ >transcript:BL97171_cuf3 ID=transcript:BL97171_cuf3|Name=transcript:BL97171_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1221bp|location=Sequence derived from alignment at Sc0000028:1601224..1606985+ (Branchiostoma lanceolatum)
AGTAATTTGCTGGAGATCGTGGTGTACAGCAACGTGCGCCAGCTCTACAC
TAACATCAAGGCTGCACGAATGGTCCAAGCCACGCCTATAAAACAGCTGC
TCAACAAGAAGTGGACGAGTTTCGTGCGGGGCTGGTTCCTGGCTTTCGCG
CTGGCTTACCTTGTTCACATCATCGTGTTCACCATCTGCTGCTGGTACAG
GCCACTGCGGACTGTGGTAAAGGTGGTCAGCGACGGGACCGACAACGTCA
CAGTCACAGTGGTGGAGAAAGTACCCGTGTTTGAGTCGTACGCCACACCG
TGGCACCAGGCGCGACTTGGCGGGGAGATGTTCACACTGCTGGTCGTACT
GGTCATCCTGTGGTGCGAGATATCTGACATGATCCATGTGAGACCAGAAG
CTTGCGGGATCCTCAACGGAGTCGGCAACGGACCTTTCCGTTTCCTTAGC
CTGCTATACAGTTGCGCTGTGCTGATCCTATTGGTGTTCCGGCTGACTGA
CCATCCCCGGGAGGATGTGGTCATGTCGCTGGCCCTGGTGTTCGGCTGGA
TGTTGCTTCTCTACTTCTCACGGGGCAGCGAAGCTCTGGGTCCATTCACA
GTCATTATCCAACAGATTCTGGCAGGAGACATCGTTCGCTTCTTCGCCGT
CTACCTTATCTGCCTGCTGGGATATACCGCAGCCTTCTACATCACGTTTG
AGCAGGCGGAGGAGTACCTGGAACAGTTCCGAGACTTCGAGCACACGATG
CTGACTCTGTTCAAACTCACGCTGGGCGTGGAGGACGTCACGGTTCTGGA
CAAGGCCCCCAACCCCGCCATGGCGGTCGCATTGTTCGTCAGCTTCCTCA
TCTTCTCCTTCCTCTTGATGACGAACCTGCTCATCGGGATGATGGGAGAG
ACGCTCTCGAGGGTGTCCGAGGAGAAGAGGGATCTATGGAAGCTGCAGCG
TGCCTGTCTGATCCTGCTGTTCGAGCGGCGGCTGCCGAGCTGCCTGCGGC
GGCCAGCGGGGGAGTACGTGGACGTGCCCGGGTTCGACCCCAACACAAGA
TACCTCAGGGTGAAGATTCTGGGCGAGCTGGAGGCGCGGAGCGAGGTGAA
GTTTAAGCGGGCCCCGGCGAGACAGCGCCCGTCGTTCGCCCGGTCCGCGG
CCGGCTCCACCAAGTCCGCCAAGATGCGCGCCATGGTCGACTACTGGCGC
AAACAGACGACCAGTCTATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000028 | genome | Sc0000028:1601224..1606985 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97171_cuf3 |
| Biotype | protein_coding |
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