transcript:BL97195_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97195_cuf2
Unique Nametranscript:BL97195_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97195_cuf2

>transcript:BL97195_cuf2-protein ID=transcript:BL97195_cuf2-protein|Name=transcript:BL97195_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=436bp
DGASYTFNGLGEYVIVDVDNGTYQVQGRTALAPGSSHATIISAVALAERG
KLPIQTNVVGNSSLDLYINGSLADTSVFESNEEMEVGNNAVILKPSNDSL
LVVFFSGVTVKVSAKKGMLAVEFSAPSEFRGKVRGLLGRWDGDSTNDFEA
FNGTVFPADSTERELYDFGKSWQVTEEDGPKKSLFFYKDGEDVSTFTYPD
YQPKYTDELVFSDPELETKAREICGNDTECLFDVSQTGDIEVAVITVEGK
EEFASQTTARDRFPPTVSGPDAVYATFNDTVTVRINASDPNNGSLVFALG
EEVPATVNLVVEEDEATLTWQVTSDAPFNLRVDVFGSDNTTAQYWPAVYM
CSCLHGGNCDVSTDPDPASAGGETKFVQRSCTCAPGYTGDRCEEDIDACL
LNFDPCFPGVGCVDLPAPAGDGTDGFRCGDCPGGYT
Run BLAST on NCBI

mRNA from alignment at Sc0000066:1313649..1316892-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97195_cuf2 ID=transcript:BL97195_cuf2|Name=transcript:BL97195_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3244bp|location=Sequence derived from alignment at Sc0000066:1313649..1316892- (Branchiostoma lanceolatum)
GGACGGTGCCAGCTACACCTTTAACGGTCTGGGGGAATACGTCATTGTTG
ATGTAGACAATGGGACGTACCAGGTTCAAGGCCGGACAGCTCTCGCACCA
GGTTCGTAACAATACCATGATATCTGATGTGGCAACAGCCTGCAGGATCA
GCTAGTACTGTATGTGTCAAATACCTTTTATGACAAGAGAGTTGCCTGTA
TGTCTCCTTCATGCTTCATCAAGTTCATGTATTCTTCGGTAATCAGCAGC
AGCCAAAGATATATTCGATTAAAGTTATTTTTCGTACATGCAGTTTTCGT
ACATGTAGTTTGCATATAATCTGTGATTTCAGTTTAAGGGCTTATGTGGT
AACCACCGATTCTTTCGCCAGATCCAATTTTGAAACAAATATCATTATTG
TTCATTCTTATTCTAGGTCCATGTACATGCTCGTTGACAACAAAGAAGCT
TGTTAGCAAAAACATAACCTTCTTCTCAAAGGCGATGAGCTTTTCATTAA
GAATATTTCTGCACTTCACAGGAAGCAGCCACGCAACGATCATCTCAGCG
GTTGCCCTTGCCGAGCGAGGGAAGCTCCCCATCCAGACAAACGTCGTGGG
TAACTCCAGTCTGGATCTCTACATTAACGGCAGCCTGGCGGACACCTCTG
TGTTCGAGAGTAACGAGGAGATGGAGGTTGGGAACAACGCCGTAATTCTC
AAGCCCTCCAACGACTCGCTCCTCGTCGTTTTCTTCAGCGGCGTGACTGT
CAAAGTATCCGCTAAGAAGGTACTAAGAAATATTCGCACGAAGGTCTTGG
TTAAGTCATAGCAGCACAACCAAAACTGTCGATCTAAGACTCTAATGGTC
TTGCTTAGATTTTAGCTTGTCTGTTTCCCTGTGACTGTCTATGATCGAAC
TATGCACAATGCAGGGTTGCTGCTATTTATGGGTCGCTAAGAAGTTTGGG
TGAGGGTCGCAAAGAAGTATGAGTAAGGGAGGGAGGTCTCTAACCGCCGT
GTTTCTATTCCTTCCCAGGGGATGTTGGCAGTGGAGTTTTCAGCACCTTC
AGAGTTCCGAGGAAAGGTCCGGGGTCTGCTGGGGCGGTGGGACGGAGACT
CGACAAACGACTTCGAGGCGTTCAACGGAACTGTGTTCCCAGCCGATTCT
ACGGAACGAGAACTGTATGATTTTGGAAAGTCATGTAAGTTCAGACTTTC
TTAGAGGCACAGCTGGGGATCGTATTTGTTTGGGGTCTCACAGTAAATGC
AAGCTATGATTGATTTTCTGAATCCAAGGAAAGTAATAGAAGATGGGGAT
GTCTATACTTCTACAAAACAAATGGAATGAAAACATTTTCATCCACAGTA
TAAAATTAGACAACAAAGAGTCGGATACTTCATTCCAAATTTGTTGACCA
TATGATTAAAATTCAATGTATTCCTGACTACAGGGCAGGTCACAGAAGAA
GATGGGCCCAAGAAGTCCTTATTCTTCTACAAGGACGGGGAAGACGTGAG
CACGTTTACTTACCCCGACTACCAGCCGAAGTACACCGATGAACTCGTCT
TCAGCGACCCGGAGCTGGAAACCAAAGCTCGCGAGATCTGCGGGAACGAT
ACAGAGTGCCTGTTCGATGTCAGCCAGACGGGCGACATAGAGGTTGCCGT
CATCACTGTGGAAGGAAAGGAGGAGTTCGCCAGTCAGACGACTGCTCGTG
GTAAGTAATCGTCGGTTGCATTGTGATCGTAAACTTTTGATTAATATATT
TAGGGTGCGTATTGATCCGCAGGCTGCTACACATGTACCTCATGTGCGTA
AAATTGGAAAAAAAGTAGCAGGATATTACTTATATTTTAATTATGGATAC
TATGAGATTCCGACACTCTCCTCTATTTTGACGGGTTATCTAAGACGTTG
CAATTTCAGGTATTCTACTAAAAGCATAACAACTGCAATGTTTGAAATCT
CATTCTTATAGATTTCATTAACACCCATGGGCCTGTACAATGTAAAAATG
AAACATTTGCAGTAGACTGCCTTTATGCTAGTTGTTAAATTAAAGACTAT
CAAATGATATCCTTTCTTCCCCAGACCGTTTCCCCCCGACCGTAAGTGGA
CCGGACGCAGTCTACGCCACCTTTAACGACACGGTAACGGTCCGCATCAA
CGCTTCGGACCCGAACAACGGGTCGCTCGTGTTCGCGCTCGGGGAAGAGG
TGCCGGCCACCGTGAATCTGGTTGTTGAGGAGGACGAGGCAACGCTTACT
TGGCAGGTTGGTATTTTCATTTTCAGTTACAAATAAATACCTGTTTGCAC
TTTCTAAAGAGATATGAGTGTGTTCTTGACGTTACATGCCCAAAGTGATT
GGTCATTCGAACCCGATGAAGGCTTTAGGGGGTGTAACTGAAAGTTAATC
TGTTAGCTGTTTTCATAAAGTATCACAAAAGATAATTGAACTATGTAACT
CAGCAAGATGTTTTAGATGCATTACGATTACCAACGTTGAAACCACGTAC
AGGAACTTATGACTTCAGATGGTCTTTGAAGGAGTGAACATTAACATAAC
ATTATTTTCAGGTCACCTCTGATGCACCGTTTAACCTGAGAGTGGACGTG
TTCGGCTCGGACAACACGACTGCACAGTACTGGCCGGCGGTGTACATGTG
CTCCTGTCTGCACGGCGGGAACTGTGACGTCAGCACCGACCCCGATCCGG
CGTCTGCGGGGGGAGAGACAAAGTTAGTCTTGTCTCATATGTACTTGTGT
TGTTAATACTAGGGCTACCTTTGATTAATTCTGATCAATTCTTCTGTGAC
TTAGAAATATTATAAAGATTCCATTGTTAAAGTTATAAGGTATATTTCAA
AACCACGCTTTCGAGATACATCGTTGGTTGGTTGTAGAATTTGCGAATTC
AAGGATATGCTTGACGGTAAGGTGGCAGACTTGCTTTGATTCAGACAAAA
TTTTACAATAGTTCTTTACCGCAAAAAAAGGTTGGAATTTGTTTTAGCCA
TGTAAATACCTCCTTTTTAATACATGTATCGCATGTCCAAATGATCTCCT
TTTTCTAGGTTTGTACAGAGGTCCTGCACATGCGCACCAGGCTACACCGG
AGACAGGTGTGAGGAGGACATCGACGCCTGCCTGCTGAACTTTGACCCGT
GCTTCCCCGGGGTGGGGTGTGTGGACCTGCCCGCTCCCGCAGGGGACGGG
ACGGACGGGTTCAGGTGCGGAGACTGCCCGGGAGGATACACAGG

Coding sequence (CDS) from alignment at Sc0000066:1313649..1316892-

>transcript:BL97195_cuf2 ID=transcript:BL97195_cuf2|Name=transcript:BL97195_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1308bp|location=Sequence derived from alignment at Sc0000066:1313649..1316892- (Branchiostoma lanceolatum)
GACGGTGCCAGCTACACCTTTAACGGTCTGGGGGAATACGTCATTGTTGA
TGTAGACAATGGGACGTACCAGGTTCAAGGCCGGACAGCTCTCGCACCAG
GAAGCAGCCACGCAACGATCATCTCAGCGGTTGCCCTTGCCGAGCGAGGG
AAGCTCCCCATCCAGACAAACGTCGTGGGTAACTCCAGTCTGGATCTCTA
CATTAACGGCAGCCTGGCGGACACCTCTGTGTTCGAGAGTAACGAGGAGA
TGGAGGTTGGGAACAACGCCGTAATTCTCAAGCCCTCCAACGACTCGCTC
CTCGTCGTTTTCTTCAGCGGCGTGACTGTCAAAGTATCCGCTAAGAAGGG
GATGTTGGCAGTGGAGTTTTCAGCACCTTCAGAGTTCCGAGGAAAGGTCC
GGGGTCTGCTGGGGCGGTGGGACGGAGACTCGACAAACGACTTCGAGGCG
TTCAACGGAACTGTGTTCCCAGCCGATTCTACGGAACGAGAACTGTATGA
TTTTGGAAAGTCATGGCAGGTCACAGAAGAAGATGGGCCCAAGAAGTCCT
TATTCTTCTACAAGGACGGGGAAGACGTGAGCACGTTTACTTACCCCGAC
TACCAGCCGAAGTACACCGATGAACTCGTCTTCAGCGACCCGGAGCTGGA
AACCAAAGCTCGCGAGATCTGCGGGAACGATACAGAGTGCCTGTTCGATG
TCAGCCAGACGGGCGACATAGAGGTTGCCGTCATCACTGTGGAAGGAAAG
GAGGAGTTCGCCAGTCAGACGACTGCTCGTGACCGTTTCCCCCCGACCGT
AAGTGGACCGGACGCAGTCTACGCCACCTTTAACGACACGGTAACGGTCC
GCATCAACGCTTCGGACCCGAACAACGGGTCGCTCGTGTTCGCGCTCGGG
GAAGAGGTGCCGGCCACCGTGAATCTGGTTGTTGAGGAGGACGAGGCAAC
GCTTACTTGGCAGGTCACCTCTGATGCACCGTTTAACCTGAGAGTGGACG
TGTTCGGCTCGGACAACACGACTGCACAGTACTGGCCGGCGGTGTACATG
TGCTCCTGTCTGCACGGCGGGAACTGTGACGTCAGCACCGACCCCGATCC
GGCGTCTGCGGGGGGAGAGACAAAGTTTGTACAGAGGTCCTGCACATGCG
CACCAGGCTACACCGGAGACAGGTGTGAGGAGGACATCGACGCCTGCCTG
CTGAACTTTGACCCGTGCTTCCCCGGGGTGGGGTGTGTGGACCTGCCCGC
TCCCGCAGGGGACGGGACGGACGGGTTCAGGTGCGGAGACTGCCCGGGAG
GATACACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97195gene:BL97195Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97195_cuf2transcript:BL97195_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97195_cuf2-E1BL97195_cuf2-E1-1564476830-256925Branchiostoma lanceolatumexon
BL97195_cuf2-E2BL97195_cuf2-E2-1564476830-256922Branchiostoma lanceolatumexon
BL97195_cuf2-E3BL97195_cuf2-E3-1564476830-256920Branchiostoma lanceolatumexon
BL97195_cuf2-E4BL97195_cuf2-E4-1564476830-256918Branchiostoma lanceolatumexon
BL97195_cuf2-E5BL97195_cuf2-E5-1564476830-256916Branchiostoma lanceolatumexon
BL97195_cuf2-E6BL97195_cuf2-E6-1564476830-256914Branchiostoma lanceolatumexon
BL97195_cuf2-E7BL97195_cuf2-E7-1564476830-256912Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000066genomeSc0000066:1313649..1316892 -
Properties
Property NameValue
Transcript idBL97195_cuf2
Biotypeprotein_coding