transcript:BL97200_cuf15 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97200_cuf15
Unique Nametranscript:BL97200_cuf15
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97200_cuf15

>transcript:BL97200_cuf15-protein ID=transcript:BL97200_cuf15-protein|Name=transcript:BL97200_cuf15|organism=Branchiostoma lanceolatum|type=polypeptide|length=273bp
ADCRWMPRMDANHILYGQSSHNVRSTGKYSFERELKVLLDLTEDGGHPNI
IQLCGVILSKGLIYILLEYVGKRDLQGLLKAVNMKATVPSSFGRECLSYA
RDVVSGLAYLDRSKVVHRDLAARNVLISNDNVAKLSDFGLSCGIYRELSE
TKNEDPLPWRWMAPECLRYDDEFSSKSDVWSFGIVLWEMATLGATPYPYI
TSQHKLLRYLIRNQERMAQPSRCTDAVYQVMLSCWQESPNNRPAAVSLEG
IFSGLLALNKEIFKPSIYAEDML
Run BLAST on NCBI

mRNA from alignment at Sc0000437:31890..35920+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97200_cuf15 ID=transcript:BL97200_cuf15|Name=transcript:BL97200_cuf15|organism=Branchiostoma lanceolatum|type=mRNA|length=4031bp|location=Sequence derived from alignment at Sc0000437:31890..35920+ (Branchiostoma lanceolatum)
GCCGATTGCCGATGGATGCCAAGGATGGATGCAAATCATATTCTGTATGG
GCAATCTTCTCGTAAGTCTCGACAAAAGCTTCTCATGTATACAAATCAGT
CGATTTGATTAGATGTCGAAAATATACTAGCTGTGATGACTTTTATGTGG
TTTGTATGTCTTATGTTTGTATGTATGTTTTATGTGCAGGAAGATAAATA
CAAATTATAAATCTTGTATGTTAGGTAATGGACTTAATCAAGTATCCGAC
GTATCCAAAGCACGTGTATAGTTCTGATCTATCCATTAAACGCTATCTAT
ATGTTCTGTTCACGGTCTTATTAGACAACGTCCGAAGCACAGGAAAGTAC
AGTTTCGAGCGTGAATTGAAGGTTCTGCTGGACCTTACTGAAGATGGCGG
CCACCCTAACATCATCCAGCTGTGCGGAGTCATCCTCTCTAAAGGTATGT
GTTACATCCATCACATAAGAAGTCCATAGATGTTATTTTCCAACAAGTAA
TGTAGGCCATAGGTTCATGCCACGTTTTATGCACATATAAACAGAAGTAT
GGTCCAGAAATATGAATAGCCAAATTGCTGTTCCCCCTAGGCCTGATCTA
CATCCTGTTGGAGTACGTCGGTAAGAGGGACTTACAGGGACTGTTAAAAG
CTGTCAACATGAAGGCAACCGTCCCGTCATCCTTTGGGCGGGAGTGTCTG
TCCTACGCAAGGGACGTTGTTTCAGGACTCGCCTACTTGGACCGAAGCAA
GGTGAGTAAAACACATCAGTCATCAGAACATCTCCCTACCATTTAACTTT
TCATTTGAACGTACTTATTGCACGCACTCACAGTGCATTCTTTAACCAAC
AACATGCAGAGAGAGTATCAACGGTCCATATATAAATACTACCGAAGGCA
ATGATTGTCAAGACTCGATCATTCAAAACGTCACTAAGATGACACTCAAG
TGTTTTCATCCCGTCGTTCCACCTTTTGCAAGTACAAATTTCCAAGACTC
TTATTTCGTCAGATATACTGCTGTATTGATAATGAAACAAAAATCTCAAC
TGTTGAATACTTTGTAACAGCCACAACAGCAATGCCACATATAAAGTAGC
CAGTAATGGACGAAAGCGCTGTAATTTACGTGATTTTACTTACTAGGTCG
TTCATAGGGACCTGGCTGCCAGAAACGTTCTCATCTCCAACGACAACGTG
GCAAAACTGTCCGACTTCGGTCTGTCTTGTGGAATCTACCGGGAGCTGTC
AGAGACGAAGGTACGGCACTATCAAGGCCAGCTCTCATGAAAACGCCAAA
TTATTTTTTTCCACATAACAATGCACAAGATCCCATACGGACTACGCATT
CATCAATATTAACATTGTTGCTTATATCGATATATCTTTATTGTGGCTTG
GCATAAACACACTTGCCTAGCTACATAAAGTCAACTTTTAATTCTTACTC
ATTTTGAAATATTGTCCACTAAAATTTTCAATTCAGTGGAAACAGGGCGA
TTTACCAACAGACACCTTATGACCTCTGGTACACCCTGTTCTTGTGTTCA
GAATGAAGACCCCCTCCCCTGGAGATGGATGGCCCCAGAGTGTCTGCGTT
ATGATGATGAGTTTTCCAGCAAGAGTGACGTGTGAGTTAACATTGATGTC
ACGACATTGAACGTGTGCACATTGCACATGAAAATTCCCACATAACGATA
TTTCACTGGTCGTTAACAACACATGCATAGCAGAAGTAATTTGAAATTCA
ACATAGCTTTATCAATTGTAATTCTGCACGACGTGCTGTTTCTTGAACGT
CTGGAATATCACTCGCATGTACTTATAATACAGCGTCAGAGTATCGATCT
CTCTTGCAGCTGGTCCTTTGGCATCGTGCTGTGGGAGATGGCGACCCTGG
GCGCCACGCCCTACCCATACATCACCTCCCAACACAAGCTGCTGCGGTAC
CTCATCAGGAACCAGGAGCGCATGGCGCAGCCCTCCAGGTGCACCGATGC
AGTGTAGGTCATACATATCATACTCTTACCATATCACCGCACTCTTATGT
ATCAACGATTATCCTGTGTCTGGAGACAATATACTTAGCTTTTAGAGATG
TAAAACACCCCTTATGGAGAATTACACGGGTCCTACCTATCATTATGCTT
TTTCTTTTGTTTTTCTCACTTGGTGCTTAGTTGATAAGTTCAAGTTGTAA
ATGTTATCTTCGACTGTCATACCCTTCGAGTTACTTTCTCTAACTCCGGA
TATGATGTGCATTGTAAAAAACGTTTTTCACAACACTAAAAGTACTCCTT
ATCAAACAGGTACCAGGTGATGCTGTCCTGTTGGCAGGAGAGCCCAAACA
ACCGACCCGCCGCCGTCTCTCTGGAAGGCATCTTTAGCGGCTTGCTGGCA
CTGAACAAGGTACTAGTATGTTGTCTACCTTCTTGAAGAAACTTTATCCT
GTGGTCTCCCTTGGCCAAATGAATAATGACAAAATCTCCCCACTAGGGTG
AATGATTAGTCGCTGAAGTTCAGAGGCAAACATGTCATATGTAATACTAG
TAAAATGAAGACTTTACTACCAAACTTGGGTATTGCAATTGGTTCTTTCA
ATGGCTGACACAATTCAATAACGCTTCACTTTTATCAGTTATGTGCATTG
CCTTTTAGCTGTTGATGTTGAAAGTCACATCAAATTCAACCAACTTTGTG
ATTTTTTTCAGGAAATCTTCAAACCAAGTATCTACGCAGAGGACATGCTG
TAGATCAATTGAATTTATGCAAATTAGGAGTCCCATTCTAGTTGCACGAT
AAATGGATAGATAAATAGAAGGAAAATGAAAGTTTTCCTGTTGTGTAATA
ATGTGTACAAATGGGCTCAATATCTGCCATTTGTGGAAATGGACCAAATA
AGAATCTCTTGCAAAATGCCTGAGCATAGACTAAGATGAGTGAGCAAAGA
AAGAAAATGTATGTCTTGTTTCAGTTAAGCTAATATCATAAGCTTGAGTT
AATATCTTCCACTGGTATTCCTGTTGGAAGTAAAAATGTGGAGTAGTGCT
ATAATAATACACAGCTTATTGCATGTTGGAATAGTCTTGTGCCCTCACCA
GTGGGACTGGAGTTTGTGATATGTATTCTAATTTCTATGTCACTATATGT
TTATGTCTTTCTGAATTTTAGTTTCTATACATTTCATGCATATTTGATCA
TCCAGTGTAACAATTAACAAGACATGTAACAAACTTAATGTTCCCAGACA
AAATATTCCCCATGTCAACTTAAAGATTGGTATTGGGCAAGTTTCTATTT
TATGTACTTATATATGTATTGTGCAGTCTTTTATGTCCAGCATGTAAATA
TGCCATAGGAACAAAAACATTATTGTGTGTAGAGCAGCGTTTATTGTTCA
TCGTGGTCTGTCTTTCCACCGTCATGATGCCTATAATGTACCAACGTTTG
TTGCATTTCACTTTGAACCATGGCTAATAATTATACATCTGGTTACTTTG
TAACAGCAGTTTCAGCTTTGATACTTTATACTATCTTAGTGACAAGAAAG
CTGGGGAGAGATTTTCCTTCATCCCTAAGGGATCAATAGGCACATTCCAG
CCCAATGTTATTTATCGTCCCAAGACCTACCAGAAACGGATTATTACTGG
TAGAGTACCTACAGGAAAAATAATCAATTCTGTAATTGGGAGGTCCAGAA
ATCAAATTTTGTTGCTCGTTACTTCAACAGCAACAGAACTTTTGCCGTGG
CTTACTTTTGGGCTCAAGCTGAGTAATGCACATGCCAGAGAAGGAAGACA
TTGTGAGATTTTGCCTGTTCAGTGTTCTGCTTTACAGTTTAAACAAAGTC
TGCTGGTTTTCTCTGAGGTTCAGGTAGGACGTCTGCGCCATTCTCTCCAA
CTCTGCCAGCTCGCTCACCGTGGGGGCCAGCTGGGCAGCATGGCCCTTGT
ACATCCCACCTGGAAGACACAGAAGAATTTTGGAATAAAATATCTTAGAA
TCAACAACACAGAGCGATTGGTTTTGTGTAA

Coding sequence (CDS) from alignment at Sc0000437:31890..35920+

>transcript:BL97200_cuf15 ID=transcript:BL97200_cuf15|Name=transcript:BL97200_cuf15|organism=Branchiostoma lanceolatum|type=CDS|length=822bp|location=Sequence derived from alignment at Sc0000437:31890..35920+ (Branchiostoma lanceolatum)
GCCGATTGCCGATGGATGCCAAGGATGGATGCAAATCATATTCTGTATGG
GCAATCTTCTCACAACGTCCGAAGCACAGGAAAGTACAGTTTCGAGCGTG
AATTGAAGGTTCTGCTGGACCTTACTGAAGATGGCGGCCACCCTAACATC
ATCCAGCTGTGCGGAGTCATCCTCTCTAAAGGCCTGATCTACATCCTGTT
GGAGTACGTCGGTAAGAGGGACTTACAGGGACTGTTAAAAGCTGTCAACA
TGAAGGCAACCGTCCCGTCATCCTTTGGGCGGGAGTGTCTGTCCTACGCA
AGGGACGTTGTTTCAGGACTCGCCTACTTGGACCGAAGCAAGGTCGTTCA
TAGGGACCTGGCTGCCAGAAACGTTCTCATCTCCAACGACAACGTGGCAA
AACTGTCCGACTTCGGTCTGTCTTGTGGAATCTACCGGGAGCTGTCAGAG
ACGAAGAATGAAGACCCCCTCCCCTGGAGATGGATGGCCCCAGAGTGTCT
GCGTTATGATGATGAGTTTTCCAGCAAGAGTGACGTCTGGTCCTTTGGCA
TCGTGCTGTGGGAGATGGCGACCCTGGGCGCCACGCCCTACCCATACATC
ACCTCCCAACACAAGCTGCTGCGGTACCTCATCAGGAACCAGGAGCGCAT
GGCGCAGCCCTCCAGGTGCACCGATGCAGTGTACCAGGTGATGCTGTCCT
GTTGGCAGGAGAGCCCAAACAACCGACCCGCCGCCGTCTCTCTGGAAGGC
ATCTTTAGCGGCTTGCTGGCACTGAACAAGGAAATCTTCAAACCAAGTAT
CTACGCAGAGGACATGCTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97200gene:BL97200Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97200_cuf15transcript:BL97200_cuf15-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97200_cuf15-E1BL97200_cuf15-E1-1564476830-464937Branchiostoma lanceolatumexon
BL97200_cuf15-E2BL97200_cuf15-E2-1564476830-464939Branchiostoma lanceolatumexon
BL97200_cuf15-E3BL97200_cuf15-E3-1564476830-464941Branchiostoma lanceolatumexon
BL97200_cuf15-E4BL97200_cuf15-E4-1564476830-464943Branchiostoma lanceolatumexon
BL97200_cuf15-E5BL97200_cuf15-E5-1564476830-464945Branchiostoma lanceolatumexon
BL97200_cuf15-E6BL97200_cuf15-E6-1564476830-464947Branchiostoma lanceolatumexon
BL97200_cuf15-E7BL97200_cuf15-E7-1564476830-464949Branchiostoma lanceolatumexon
BL97200_cuf15-E8BL97200_cuf15-E8-1564476830-464952Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000437genomeSc0000437:31890..35920 +
Properties
Property NameValue
Transcript idBL97200_cuf15
Biotypeprotein_coding