transcript:BL97203_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97203_cuf2
Unique Nametranscript:BL97203_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97203_cuf2

>transcript:BL97203_cuf2-protein ID=transcript:BL97203_cuf2-protein|Name=transcript:BL97203_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=377bp
MERGYHIFYQLLSNGLKEVTKMLMVSENAKEYRFLEKGLTTIKGVDDKEE
MELTHEAFDVLGFTPDEVMNIYRLTGGLCHFGNMKFKAKPREEQAEMDGT
ESADKMSFLYGVNSGDLQKGLLKPRVKVGNEWVSKGQNCNQCIYAVGALA
KGVFDRIFKFLVKKCNETLDTKMKRENFIGVLDIAGFEIFEFNSFDQLCI
NYTNEKLQQFFNHHMFVEEQDEYKREGIQWETIDFGMDLAKTLALIEKPL
GILAILEEQTMFPKSSDKSFIDKLRDQHLGKHTSFLKPKKPKIPKYEGHF
DLAHYAGNVTYNICGWLEKNKDPVNETVVGCFKKSSNELLKDLYADFMTA
EDTAAAQKKSGGGGKGKKGGAFQTASS
Run BLAST on NCBI

mRNA from alignment at Sc0000733:48399..52552+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97203_cuf2 ID=transcript:BL97203_cuf2|Name=transcript:BL97203_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4154bp|location=Sequence derived from alignment at Sc0000733:48399..52552+ (Branchiostoma lanceolatum)
CCTCAGTATGGTGACACCACTGTCGCGCATATTCGTGTGTTAACTTAAAC
CCTGTCAGTTGCATAGACTCACACTTCATTAAGAAGTGGCTTGAGTTAGT
TTATGCCCATTATCTACTCTTATAGTTTATTATTGCTTTTCTTTGCCCAG
TGGCGAATCCGGTGCGGGTAAGACTGAGAACACGAAGAAGGTTATCGCCT
ACTTCGCCCAGGTTGCTGCCATTGGCGGTCCTAAGAAGGAAGAAGAGAAG
AAGATCACCCTTGAGGACCAGATCGTGCAGACCAACCCTGTACTGGAGTC
CTTCGGTAACGCCAAGACCGTCAGGAACAACAACTCCTCCCGTTTTGTGA
GTACTCTTAAACTCGAGATCTAATAGAGNCCGTCAGGAACAACAACTCCT
CCCGTTTTGTGAGTACTCTTAAACTCGAGATCTACTCGAGTATTCTGAAT
AAGGCAATCTGTATGAAATTGACATTAACTTCCCCATATTAGCACATTTG
CATCATTATGTCATACTTCGGGCGTTTGAAAAGAGCGCCGAAACAGGGCG
CAAAAGCATTTTTTCATTTATGGGTACCACCCGATAATCAGCCCAGAAGC
CGGCCGTAACCATTTTCTGTCTACAATTTTCGGAAACTTCCGACCGTGTG
ACGTCACAATGACCGAGCACATTGAGCCATAACCGTGTGATTAAAAAGAA
AACTACTCTCCTCTTAACATCACAAAACCCACACATCATAGAAAAAGTGA
GATCATTCGTCTTCCACTGTCTCGGAAAAAGAAGTCAAACCCAACTAAGA
TAGAATTTAGTGTTAGTATTTAGACTAGAAAAGCACATGCTATATTGTTA
TCAATTGTCTGTCCGTCCCTTCATCTTACATGTACTTGCAATTAGCCTAC
GGGCAAAAACTTGCAATAGATTTATTATTAATTCACCGGAAGCATTCGGG
ACTCATCTGTAAGAATCGCATACATTCGGAAGATTTGAAATAATGGCTGG
CCTCCAGGCGCTCAGATTTTCAATGAGTTCCCACCACAGAACGACATTGC
ATCTTTGCTCCATGATGGTCGATATGCAATGGGATACTGTTATTTAAACT
TACTATGGATAGAAATCACTAGATTTTGATTTTGAAAATATGACTTTCAA
CGCCCTAATAATGCTTAGGGCACCATTAACGTTCAAACCAATGAAAGAAA
AGTGTAATGAAAGTAGAAATGTAATCTAAAAGCATCGTATGATTCAAGAC
AGAAACGTACAATGCTCCTAACCGGCGAAACTCACTTCATCTGCAGTTTG
CTTGTACGGGCCCTTTGATTTCAATCGATGATCTTTGAGTAACGGAACTG
TTCTTACACACCAGGGTAAATTCATCAGGATCCACTTCAACCAGAAGGGC
AAGTTGGCTGGTGCCGACATCGAGTCTTGTGAGTATGGATTTGAATATAG
TAATAGCCATCTTATATCGAAATCAATATCTGTGATGACTCAAATCTCAA
TTAATCCGTCTCTTTTACTGCTTCTTTGGTCCCATGTTTTATCACAAGCT
GCTGTGTGGTGTTGTGTTAAGTACCGTACTCGTTTTGCATCCCCCAGACC
TGCTGGAGAAGGTGCGTGTGATTGAGCAGCTGCCTGAAATGGAGCGTGGC
TACCATATCTTCTACCAGCTGCTGTCCAATGGCTTGAAAGAAGTCACAAG
TAAGTGGGCATACGGGTACACATTTTTCAAAATAATGGCATATATGACCA
TATGCCAAAGATGACAGTGACCAACGTTACCCTGAGGTTTTCAAAAAAGC
ATTGAGACTCACTGCATCTTTTCTGATTAGTATCCAGTTGCCATTGTGTA
AATTTAAAAGATGCTCGTTCGTCATACTGATGCTGAAGATCGTAAGACGC
AAAACGGGACAGCGTTAAAACGGCGAAGTTTATTAGCCCTATGTTTTTCA
TATCAGGCATTCTGGAATGTATAAACAAATTCTCTCACCCTACATTACAG
AGATGTTGATGGTGAGCGAGAACGCCAAGGAATACCGCTTCTTGGAGAAG
GGCCTGACGACCATCAAGGGCGTGGACGACAAGGAAGAGATGGAGTTGAC
GCACGAGGCCTTCGATGTGCTGGGCTTCACCCCAGATGAGGTGATGAACA
TCTACAGGCTCACGGGAGGTCTGTGCCACTTCGGTAACATGAAGTTCAAG
GCCAAGCCAAGGGAGGAGCAGGCAGAAATGGACGGCACTGAGTGTGAGTT
AGAATTCGATTTAAGGATTAATGGGTGAACCAATGGGTATCTGGTATCGA
CACATAGAAAACGAAGGTATTGACACAAAGATATTCTGCACCTGTCTGTG
TGTGTGTTCTGATTTTAGTTACACGTCTTGTATCTACTTGTGCAATGTGA
ATTCACGGTCATTTGAACTCTTGCAGCCGCCGATAAGATGTCCTTCCTGT
ACGGCGTCAACAGCGGTGACCTGCAGAAGGGTCTGCTGAAGCCCAGGGTA
AAGGTCGGCAACGAGTGGGTGTCAAAGGGCCAGAACTGCAATCAGTGCAT
CTACGCCGTCGGTGCCCTGGCTAAGGGCGTGTTCGACAGGATCTTCAAGT
TCCTGGTCAAGAAATGTAACGAAACTCTGGACACCAAGATGAAGAGGGAG
AACTTTATTGGTGTGCTGGATATTGCCGGCTTTGAGATTTTCGAAGTAAG
CAAACATTATATTTGGGATAATGCGCCAGACTGGAAGACGTGCGTTTTAT
TTTCTAAGAATAATTTATAAGACATGCCGTTACTTCTCTGCACTTGGGAA
AAAGCGACAACACATCCGTTTATTTGATAGGACGTTGTAAATTGTATTAC
AAAATCATCCGCTATCAAAATTACAACTGATGTTAAATTCTATTAACATA
GTTCAACAGCTTTGATCAGCTCTGCATCAACTACACCAACGAGAAGCTGC
AGCAGTTCTTCAACCACCACATGTTCGTGGAGGAGCAGGATGAGTACAAG
AGGGAGGGAATCCAGTGGGAGACCATTGACTTCGGTATGGACTTGGCAAA
GACGCTTGCTCTGATCGAGAAGGTAAGCAAAATAAGTAGACCGGTTATAT
ACGACTTGCCTCAAAGTTATAAATTAGATAAGACACTACGATGGTTATTC
TATCAAGTAAGTATATGAAATCAGCCTTTCAATTTGAAGACCTGTTGTAT
TTGAGTCCCGTTTGACACATTTTGTTACTTTTTTTATCTAGCCTCTGGGT
ATCCTGGCCATTCTGGAAGAGCAGACTATGTTCCCCAAGTCCAGCGACAA
GTCCTTCATCGACAAGCTGCGCGACCAGCACTTGGGCAAGCACACCAGCT
TCCTGAAGCCAAAGAAGCCCAAGATCCCCAAGTACGAGGGTCACTTCGAT
CTGGCTCACTACGCCGGTAACGTTACATACAACATCTGCGGCTGGCTGGA
GAAGAACAAGGACCCCGTGAACGAGACGGTGGTCGGCTGCTTCAAGAAGT
CTTCTAATGAGCTGCTGAAGGATCTTTATGCAGACTTCATGACGGCAGAG
GACACAGGTTAGTACTTTTGTTCTACAGTGCCACTGCATCCCTTGAGTCN
CACGCCTACGAAGTACTCAAGGAGCAGAGGTAAAACAAACATGAGTTAAA
AAACACCAGTATCTCAACCAAAGAGTTGGGCTCTATATTCAAGAGACCAT
CCAAACACTCTCATTTCACCCTTGGTCCAAGACACACAAACACACACACA
CACACACACTCACGCAGTCACACCCCCCCCCNTCATCGTTTTCAAAAGTC
GGCTTCGTCATGGTACTACCTTGCCTTAATCGTTCTTTCTCCTTTATTCA
TATGTTCAAAATTTCGCTAAAACACTACCATCAAGCGTATTGTCTATTTC
CTGATTATGGTGTGANATTGTTTATTTCCTGATTATGGTGTGAGCATGGC
CATACATGTGGTTAGACAAGGGAATGCTTTACACTCTGCCGGCTGATCGC
TCGGCGCATTGGTAATCAATTCCTGTAGTGTTGAATATCTGGCAGCGGAA
CAGTAACCCATGCACGTGTTTCCACCCTATTAGCTGCTGCCCAGAAGAAG
TCTGGTGGTGGTGGAAAGGGCAAGAAGGGCGGAGCCTTCCAGACCGCCTC
TTCN

Coding sequence (CDS) from alignment at Sc0000733:48399..52552+

>transcript:BL97203_cuf2 ID=transcript:BL97203_cuf2|Name=transcript:BL97203_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1131bp|location=Sequence derived from alignment at Sc0000733:48399..52552+ (Branchiostoma lanceolatum)
ATGGAGCGTGGCTACCATATCTTCTACCAGCTGCTGTCCAATGGCTTGAA
AGAAGTCACAAAGATGTTGATGGTGAGCGAGAACGCCAAGGAATACCGCT
TCTTGGAGAAGGGCCTGACGACCATCAAGGGCGTGGACGACAAGGAAGAG
ATGGAGTTGACGCACGAGGCCTTCGATGTGCTGGGCTTCACCCCAGATGA
GGTGATGAACATCTACAGGCTCACGGGAGGTCTGTGCCACTTCGGTAACA
TGAAGTTCAAGGCCAAGCCAAGGGAGGAGCAGGCAGAAATGGACGGCACT
GAGTCCGCCGATAAGATGTCCTTCCTGTACGGCGTCAACAGCGGTGACCT
GCAGAAGGGTCTGCTGAAGCCCAGGGTAAAGGTCGGCAACGAGTGGGTGT
CAAAGGGCCAGAACTGCAATCAGTGCATCTACGCCGTCGGTGCCCTGGCT
AAGGGCGTGTTCGACAGGATCTTCAAGTTCCTGGTCAAGAAATGTAACGA
AACTCTGGACACCAAGATGAAGAGGGAGAACTTTATTGGTGTGCTGGATA
TTGCCGGCTTTGAGATTTTCGAATTCAACAGCTTTGATCAGCTCTGCATC
AACTACACCAACGAGAAGCTGCAGCAGTTCTTCAACCACCACATGTTCGT
GGAGGAGCAGGATGAGTACAAGAGGGAGGGAATCCAGTGGGAGACCATTG
ACTTCGGTATGGACTTGGCAAAGACGCTTGCTCTGATCGAGAAGCCTCTG
GGTATCCTGGCCATTCTGGAAGAGCAGACTATGTTCCCCAAGTCCAGCGA
CAAGTCCTTCATCGACAAGCTGCGCGACCAGCACTTGGGCAAGCACACCA
GCTTCCTGAAGCCAAAGAAGCCCAAGATCCCCAAGTACGAGGGTCACTTC
GATCTGGCTCACTACGCCGGTAACGTTACATACAACATCTGCGGCTGGCT
GGAGAAGAACAAGGACCCCGTGAACGAGACGGTGGTCGGCTGCTTCAAGA
AGTCTTCTAATGAGCTGCTGAAGGATCTTTATGCAGACTTCATGACGGCA
GAGGACACAGCTGCTGCCCAGAAGAAGTCTGGTGGTGGTGGAAAGGGCAA
GAAGGGCGGAGCCTTCCAGACCGCCTCTTCN
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97203gene:BL97203Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97203_cuf2transcript:BL97203_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97203_cuf2-E1BL97203_cuf2-E1-1564476830-496133Branchiostoma lanceolatumexon
BL97203_cuf2-E2BL97203_cuf2-E2-1564476830-496135Branchiostoma lanceolatumexon
BL97203_cuf2-E3BL97203_cuf2-E3-1564476830-496138Branchiostoma lanceolatumexon
BL97203_cuf2-E4BL97203_cuf2-E4-1564476830-496140Branchiostoma lanceolatumexon
BL97203_cuf2-E5BL97203_cuf2-E5-1564476830-496142Branchiostoma lanceolatumexon
BL97203_cuf2-E6BL97203_cuf2-E6-1564476830-496144Branchiostoma lanceolatumexon
BL97203_cuf2-E7BL97203_cuf2-E7-1564476830-496146Branchiostoma lanceolatumexon
BL97203_cuf2-E8BL97203_cuf2-E8-1564476830-496148Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000733genomeSc0000733:48399..52552 +
Properties
Property NameValue
Transcript idBL97203_cuf2
Biotypeprotein_coding