transcript:BL97226_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97226_cuf2
Unique Nametranscript:BL97226_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97226_cuf2

>transcript:BL97226_cuf2-protein ID=transcript:BL97226_cuf2-protein|Name=transcript:BL97226_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=384bp
MGAFCEMCEEGYTGDATQGTPLDCVRSRPQCFCHGHSETCDVLGRCLNCQ
HNTVGPQCETCKPGYVGDPTSGSPLSCRPRQAAGHGCNCHGHSVTCDAVG
NCLNCIHNTEGPRCESCRPGYRGNPTRGTPYDCVPVVTWPQEVMTCQCHG
HSDLCDDKGRCYNCRHNTAGFFCERCKPGFTGIATSGSPWACLPVMPVTE
PHCQCHGHAYTCDAEGRCKNCLHNTAGDRCQYCIPGYVGDATSGTPMDCS
PANVVATAPQTSCECHGHAALCNQDGHCKDCRHNTVGDFCERCAPGYYGD
ATMGKFGDCAKCPCPLTIASNSFAKTCTIARDGKPTCTNCQRGYVGRNCE
RCARGWTGDPRRVGGRCTRDRGRGRQGRRRQRSN
Run BLAST on NCBI

mRNA from alignment at Sc0000303:124950..130350+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97226_cuf2 ID=transcript:BL97226_cuf2|Name=transcript:BL97226_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=5401bp|location=Sequence derived from alignment at Sc0000303:124950..130350+ (Branchiostoma lanceolatum)
GTTAGAAGTGCCTGCACAACACGATGGGCGCCTTTTGTGAGATGTGTGAG
GAGGGGTACACGGGCGACGCTACCCAGGGCACTCCTCTCGATTGCGTGCG
CTCTCGTCCCCAGTGTTTCTGCCACGGACACTCGGAAACGTGTGACGTTC
TTGGAAGATGTCTGGTAGGATGAGCTTTAACTTTCAGGCCCATTATAAGT
TGTGCGTATATTTCTGTCCGGATGTGTTCTTGCATTGACATGTTTTTGTC
TTAGGTAAAGTTTGCGGCCGAAGAAGTCATTATTTTCGGTTCAATAACCA
GGTTGCACAACAGTGGGTCAAAGCAAAAAAAACACAAAAAAACTTCTTCC
TTAACCAAAACCTGACCCTGAAAATTTTGATACGCAACTCATATACAAAC
TTGAATATACGCACAAGTTTGAACGGGCCCTAACAGAATACTATATGCTT
CTGACCACATGGGTTGATGGCACATTGCAGATCCACATCTTATTAAAATG
CATGGAAATCCCTTCAGGAGCTTTTTTCACGCATCTTGTTTGTTAAATTG
GTCTTTCTTTCATGTATACTAGTACATGTCATAATGGACATTTTTGCATT
CTGGCAGGATCGCCGATTCTGCTGGTAGAGATGCCGATTGGAGACTGTCG
GAACTTTCAACCTTCGATTCAAGTCGCTTTGAAATTTAGGATAAAAGGAG
AGACGACCCTAACACCTTAACACATTCCTAGCATCCCGATCTGAGCTAGT
GTCTAATTTCTACCGGGGATCTCTACCGGTCGAATCGACGATTCTGCCAG
ATCGGAATCTCTACCCTGACATATACGAAGAACATTTCGTCATTTATTCT
CCAGAATTGTCAACATAACACCGTAGGCCCACAGTGTGAGACGTGCAAGC
CGGGGTATGTAGGGGATCCAACTAGCGGTTCTCCTCTGTCCTGCAGGCCA
CGGCAGGCGGCGGGACACGGATGCAACTGTCATGGCCACTCTGTCACCTG
CGACGCTGTAGGCAACTGTTTGGTAAGACCCTGTGCACTTTTTATGGCAT
TGCACGCAACCTTATCTCTCAATCGTTCCTACTAAAGTGCCCACTGAAAA
GTCATCTTATAAGCCATTCTAATTTCCAGTAGTAATCTTATATATTCAGC
TCTTATCTCTATTCATAGTATAAACTATTTGATTATCGTTATTGTATCGT
TATCAATTTCTATGAACTACATGTATGTATTGATGTTTTGTCATTTGTCG
GCTATATAAAGCTAAGAGTCTAATCGATTTTGATTAGAATATAGGAGGAG
GTCCTCGTATAACCAATATATACTTTTCCCTCCTCCTGCACCTGTCGTTT
ATTGGATGAAGTCATTTCTTAAGGAAAAAAAAAATCCTACATACCTGTAC
ATTTTCGCCCAGAACTGTATCCACAACACGGAAGGTCCGCGATGTGAGAG
CTGCCGACCTGGTTACCGTGGCAACCCAACCAGGGGCACGCCCTACGACT
GCGTACCAGTGGTGACGTGGCCGCAGGAAGTGATGACGTGTCAGTGTCAT
GGGCATTCGGACTTGTGTGACGACAAAGGCCGCTGTTATGTAGGTCTTAT
GTTATTTTGTTGTATGCCGAGAAATATCAAGTATATAATTCACACGTAAA
TGTATAATAACATCTCATATATCGGCAGTAATGGACCAGGAATCGTAAGA
CTTGTAATCACCTACGTTCAACAATGAAACTGCCCAAGAAAGACCTAGAA
AACCTGGTCTAAGTGGATCGGATTGTAAGAAAATCTAAGGGACCACCAGA
AAGTAGTCACAATGGCAAGGTGGTTCTTATGTAGAGGCTGTGACTAATAC
AGGTTTCACTTTATATCAATGACCAGGTGGTCTTTATGTAGAGATGGTCA
CTTGTACAGGTTTGAGTCAGTATATGTATGGCGATGGCCAGGTGATCCTT
ATGTAGAGGTAGTCACTTATAGTGGTTTGACTGTATATCAATGGCCAGGT
GGTTCTTATGTAGAGGTATTCACTAGTAGAGGTTTGACTGTATATCAATT
CTTATTAAAAGGTGGCCACTTGTACAGGTTTGAACATATGTGTAGTACAC
TGTTCTCGCTGGATAGTATTTTCACAGCATAGACAAGGGTTGAAACTTGC
ATTTTCTTGATTTTTGGTAACTTCCTTATCCTTGGAGTAAACAACCTTTA
CCTGTGCCTGTAGAATTGCCGGCACAACACGGCCGGGTTCTTCTGTGAGC
GCTGTAAGCCTGGGTTCACTGGCATCGCTACATCCGGGTCCCCGTGGGCC
TGCCTTCCCGTCATGCCCGTGACAGAGCCACACTGTCAGTGTCACGGTCA
TGCCTACACATGTGACGCTGAGGGAAGGTGTAAGGTTAGTTTGTTTGCTT
GTTCATTCCATAGTCATGCATAAGTAATACTATTCTTCTTCTTGGAGTCT
TTATACGAACATGAAATATACAATATAACAACTTTGAATTACAATTAAAC
TGACCACACATACAATTTATTGATAAGATATCTAAAAACTCAATTGGAAC
AATTGGAAATCATTACTTCACCACTCGTCAATGATATTTCATATTCATTA
ACGCCAGTCTTCGGTATAACAATAAGTGTGATATTTTTTGGAGACTCTCA
TCTATGAATTGTACATTTACAGTATCACACGATACACTCACATCCCCCTC
ACAGAACTGCCTGCACAACACCGCAGGCGACCGTTGCCAGTACTGCATCC
CGGGTTATGTTGGCGACGCCACTAGCGGAACACCCATGGACTGCAGCCCC
GCTAACGTGGTCGCGACTGCACCGCAAACGTCGTGTGAATGTCATGGGCA
CGCCGCCCTGTGTAATCAGGATGGACACTGCAAGGTAAATGTGCTCAACA
TTAGTAACATGTATGTATTACAGGGTAGGTATTCAATTGGAAAATCAAAG
GCATGACAAGCAGTTGCATGAGGAATCACTTACAACAAGAGTTCCACGAC
CTCATATCTCCATGAACAATTCTATTCATGCAAATGATTTACACATTTTC
ATAATATATGCTTGGCCATAAACACCTTTATGTAACTTACACATGTTGCA
ATATTGACAGTCCTATAATTGTCCAATTAGATGAATTATGGTGTCTTTGC
ATTAATTATGCAAATTATGAATTTATTTGCATAATTGATATCTGTTAATG
CTCTACTTTCCATAAACTACCTATGTTACATGTATTTGAGTCTGATAATG
GAAAACACTGCAAATATAGATTTTCCTCATTAGCTATGCAAATTAAGTCA
CAATTAGCATAATTTGAACTTCATTATGTATATCTCTGTCTAAGCTACCT
GCATACTAAGTATCATATTGACCGTCCTATAATTTTCCAATTTAGATGAG
ATATGGTGCTTTGCATTAATTATGCAAATTAGGAATTTATTTGCATAATT
GGTATCTGTTGATGATCCACTTTCCATAAACTACANTTTCCTCATTAGCT
ATGCAAATTAAGTCACAATTAGCATAATTTGAACTTCATTATGTATATCT
CTGTCTAAGCTACCTGCATACTAAGTATCATATTGACCGTCCTATAATTT
TCCAATTTAGATGAGATATGGTGCTTTGCATTAATTATGCAAATTAGGAA
TTCATTTGCATAATTGTTATCTGTTGATGATCAACTTTCCATAAACTACA
TACGTTACATGTACTTGAGTCTTATAATGGAAAACACAGCAAATATAGAT
TTTCCTCATTAGATATGCAAATTAAGTCCCAATTAGCATAATTTGCACTT
CATTGTGTATATCTCTATCTAAGCTACCTGCATACTAAATATCATGGAAA
TCCGTTGTTCCTTTGTTCAGTTATTCTCCTAAGAAGATTTTCACAAAAAC
ACCCCTGCAGTTCCAGAGGAAGCTGCTAGGGGGCCCAAACCTACACCACT
TCTTTATTACATCACAAGCTATCTGCCATCCAAAAATCAATACCACAGCA
CGTCCAGGTCAAAAGATACAAAAATTGAAGTTCTATTGCAGTACCAAGGT
CACATACCAGGGGGCCCAAAATCGACCTTGAATTTCGGCTTCACAACACC
TGCCCACATACCAAATATCATCGTAATCCATCAAGAGGTTCTTGAGTTAT
GCTGACTAGAATGGTGCGGAAACACAAACAGACAAACCCACAGACACACC
CAAAACTATATCTCCATTTTTCATGGAGATAATAACAAGAGAAACAGGAT
TTTGCAACTTGAAACTCGCCTTCGTCTGTAGTAGCATGTGGATAAAAGTT
AAAGCCCCGGTTACAAATAGCCGAACATGGTTCCCGTTCACCAGAGTATA
TACATTGTAAAGAGATTAGTTTGCTTAACTTTGCTAATTTTTTTTCTTTA
TCTGTAACTTTCAGGACTGCAGACACAACACCGTGGGTGATTTCTGTGAG
CGGTGCGCCCCTGGTTACTATGGCGACGCCACCATGGGGAAGTTCGGGGA
CTGCGCAAAATGCCCCTGTCCTCTTACTATAGCTTCAAACAGGTAACACC
GCTATGACTTTTGTGTAAACATTGGTCGGTTACATGTATGTAAAGCATAG
GTAACGTCTACGATTCCGATTAATACTTATTTGATTGTTTGTTTGTTCGT
TTCTTGGTTTGAACTTTGCTTATTTATGAGAAGTTCGATTCAAATCGGCC
TACAGGCCGCTTTCTATTAAGGTCATGAGGGAAGAGGTTAGCATTATGTC
TATCTTACATATGCAAATATATAACATAATTGACTTTTGTATAAATTTGA
AGGAGTAGTGCTAATTCTGTAAAACGCGTTCCACCCGTTGCTAATTCTTT
TTTGTGCATCAGTTTTGCCAAAACCTGCACGATAGCAAGAGATGGAAAAC
CAACCTGCACAAACTGCCAACGGGGCTACGTCGGGCGGAACTGTGAAAGG
TACTGACTTCCAGGAAAAACTACTAAACATCTGACAAAGTTTGTTTATTT
ATTTATTTACTTGGGTGCTCTTTTGACATGTTTACAATGGGGTTGACTAG
TAAATAAATAAATAAATGAATGGGTAGAGGATGGACGAACGAACGAACGA
ATGGATGGATGAATTATAATTAATTAATTGATTAATTTAAACACAGCTAT
TTCCTTTGCAACAATATCGGCGCTTTAATCTTTGCTATTCCGTTATGCGA
GAAAACTTTACGTTCTCAAGTGCTCTGAGGCTAACCGGTAGCCTACCGTG
TCTCTCCAGGTGTGCCCGAGGTTGGACGGGAGACCCCAGGAGAGTCGGCG
GGAGGTGTACCAGGGACAGGGGGAGGGGTCGGCAGGGGAGGCGCCGACAG
AGGAGCAACTGATCACTTTTAGGATTATACAGCGGCATCTGTATTGTAAC
C

Coding sequence (CDS) from alignment at Sc0000303:124950..130350+

>transcript:BL97226_cuf2 ID=transcript:BL97226_cuf2|Name=transcript:BL97226_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1155bp|location=Sequence derived from alignment at Sc0000303:124950..130350+ (Branchiostoma lanceolatum)
ATGGGCGCCTTTTGTGAGATGTGTGAGGAGGGGTACACGGGCGACGCTAC
CCAGGGCACTCCTCTCGATTGCGTGCGCTCTCGTCCCCAGTGTTTCTGCC
ACGGACACTCGGAAACGTGTGACGTTCTTGGAAGATGTCTGAATTGTCAA
CATAACACCGTAGGCCCACAGTGTGAGACGTGCAAGCCGGGGTATGTAGG
GGATCCAACTAGCGGTTCTCCTCTGTCCTGCAGGCCACGGCAGGCGGCGG
GACACGGATGCAACTGTCATGGCCACTCTGTCACCTGCGACGCTGTAGGC
AACTGTTTGAACTGTATCCACAACACGGAAGGTCCGCGATGTGAGAGCTG
CCGACCTGGTTACCGTGGCAACCCAACCAGGGGCACGCCCTACGACTGCG
TACCAGTGGTGACGTGGCCGCAGGAAGTGATGACGTGTCAGTGTCATGGG
CATTCGGACTTGTGTGACGACAAAGGCCGCTGTTATAATTGCCGGCACAA
CACGGCCGGGTTCTTCTGTGAGCGCTGTAAGCCTGGGTTCACTGGCATCG
CTACATCCGGGTCCCCGTGGGCCTGCCTTCCCGTCATGCCCGTGACAGAG
CCACACTGTCAGTGTCACGGTCATGCCTACACATGTGACGCTGAGGGAAG
GTGTAAGAACTGCCTGCACAACACCGCAGGCGACCGTTGCCAGTACTGCA
TCCCGGGTTATGTTGGCGACGCCACTAGCGGAACACCCATGGACTGCAGC
CCCGCTAACGTGGTCGCGACTGCACCGCAAACGTCGTGTGAATGTCATGG
GCACGCCGCCCTGTGTAATCAGGATGGACACTGCAAGGACTGCAGACACA
ACACCGTGGGTGATTTCTGTGAGCGGTGCGCCCCTGGTTACTATGGCGAC
GCCACCATGGGGAAGTTCGGGGACTGCGCAAAATGCCCCTGTCCTCTTAC
TATAGCTTCAAACAGTTTTGCCAAAACCTGCACGATAGCAAGAGATGGAA
AACCAACCTGCACAAACTGCCAACGGGGCTACGTCGGGCGGAACTGTGAA
AGGTGTGCCCGAGGTTGGACGGGAGACCCCAGGAGAGTCGGCGGGAGGTG
TACCAGGGACAGGGGGAGGGGTCGGCAGGGGAGGCGCCGACAGAGGAGCA
ACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97226gene:BL97226Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97226_cuf2transcript:BL97226_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97226_cuf2-E1BL97226_cuf2-E1-1564476830-429869Branchiostoma lanceolatumexon
BL97226_cuf2-E2BL97226_cuf2-E2-1564476830-429871Branchiostoma lanceolatumexon
BL97226_cuf2-E3BL97226_cuf2-E3-1564476830-429873Branchiostoma lanceolatumexon
BL97226_cuf2-E4BL97226_cuf2-E4-1564476830-429875Branchiostoma lanceolatumexon
BL97226_cuf2-E5BL97226_cuf2-E5-1564476830-429877Branchiostoma lanceolatumexon
BL97226_cuf2-E6BL97226_cuf2-E6-1564476830-429879Branchiostoma lanceolatumexon
BL97226_cuf2-E7BL97226_cuf2-E7-1564476830-429881Branchiostoma lanceolatumexon
BL97226_cuf2-E8BL97226_cuf2-E8-1564476830-429884Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000303genomeSc0000303:124950..130350 +
Properties
Property NameValue
Transcript idBL97226_cuf2
Biotypeprotein_coding