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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97233_cuf6 >transcript:BL97233_cuf6-protein ID=transcript:BL97233_cuf6-protein|Name=transcript:BL97233_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=313bp
HCPITVQHQYYCNKMAAQGDVDELFDIKNAFYLGNYQQCINEAQKLKISS
PDVKTERDVYMYRAYIAQKKYGVVLDEVSGVSASELQAVRLYADYLAASD
QKRDAVLKDLEGQMSSSLDVGNNTFLLMAASIYLHEDNYDAALRCLHQSD
SLECSALTVQIYLKMDRVDLAKKELKLMQEKDDDATLTQMALAWFNMGVG
GEKLQDAFYIFQEMIDKNSASPLLLNGQAACCIHQGKYEDAEGILQEAMD
KDSNNPETLVNMIVLSQHLGKAPEISNRYLSQLKTSHQNHPFVKEFTAKE
NEFERLMKQYAPA Run BLAST on NCBI mRNA from alignment at Sc0000002:7895974..7903242+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97233_cuf6 ID=transcript:BL97233_cuf6|Name=transcript:BL97233_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=7269bp|location=Sequence derived from alignment at Sc0000002:7895974..7903242+ (Branchiostoma lanceolatum)
CCATTGTCCAATCACCGTACAGCATCAGTACTACTGCAACAAGATGGCGG
CCCAAGGCGACGTGGACGAACTTTTCGACATCAAAAACGCCTTTTACCTG
GGGAATTACCAACAATGTATCAACGAGGCACAAAAACTGAAGGTGAGGCG
ATGTAGAGTATCCGTCAGCGTGATTTTTAGCTGTATTGGTCGCCCAGATT
TGACGAAACGCGAGGGGAAAGTAGACCTGCCCCCCTCCCACCTTCAAAAT
CCTATGATGATGGCACCGCTGGTGACGTGTCGATGTAAAACGTTACAAGT
TGTCTTTCATGACATCCTATGTATGTACCTGTGCTCGCGGAGTTAAATTA
AGATGTCTGTTCAGGTCACCATACATGTGACAATGGGAATCGAGAGTCTA
GACATGTGTGTAACGAGAAGAAGTGAGTATTTCGCATAGAAATTGTGTCA
TGTTTCCTTGAAAAAAAAAACACTATCCGTGGAAACTTTGCTTGTACATA
TATTCATAACAGACCTCACTAGATAGGTCTATACAAGGCTACAAGTAAAA
GACACCCTCCAACAAGATGGTATAAAGGTATAAAGGTATAACAGTCGCCA
TAGCTATCCGATGAGGTTCAAAACATATATGTACATTGTGTTGTTATGTT
ATCTGTTATTGTCAAATAATTATGAAGTACACATGTATGACGTTACCCTC
TTACAAACTTTCCCACAGATTTCCTCCCCTGATGTGAAGACAGAGAGGGA
TGTCTACATGTACCGGGCCTACATTGCGCAGGTAAAGACATTTGTATGGG
ATTCTATTTTCATTGTAGTGCTTTTGTGCATGGTTGTCCAACAGCACAAC
CAACAAAGAATCCTAGTCAACTCGCCCCAAGTCCAACTCGCCCCAACTAT
TTGCTACCAACTCGCCCCAAATTTAATAGTGCTTATCAAACTTGGTCTTA
TACTGGTTTTATATGCATGACTCCTACTTCTAAATATTACTTTACATGTT
AACAAACCTCGTGACTCTAATTTAACATATTTTTTCGCTGGGCACGTATA
AATTTAGCAACAAACTCACTGACGGACCCGGTTGGCATGTCGGCCCGCCG
TGTCACCGTGCCGACGGCCGCTAGCTATAGTCTCAAGCATGGCGATCAGA
AAGACTGTTGGCTTATCGTATGTGCTAGGAAACTAAGCGTTTTAAGAGCA
TATACTTGAATCATAATTTGAGTCAGCAGTGAGCCATGCTTGAGATTATA
GCGAGCGGGCGCAGGTCCCAGTGAACCCGGCGTGCCGCTCGCTACATGGT
CCGCCGACGCCCCCGGCATTCATCGGTATTAAATGCCGAACAGAGAAGAG
AATGTTAAGATTTAAGTCACGAAACTTTGTTAGCATGTAAAGCAATATTT
AGAAGTAGGAAATATGCATATAAAACCAAGTTTAATAAGCCCTGATTAAT
ATATAGAATTGGGGCGAGTTGGTCATAAATAGTTGGGGCGAGTTGGACTT
GGGGCGAGTTGACCTGTTACATCAACATGACAATTTGACATGTAATCTCA
AACTAGTCCAAGCAGCACTAGTACTACTGTCTGGGTCGGCGTTAAGTGCA
AAGTTTAACATTTACAAGTATGTCATTGTTTCAATATTCAAGTGATATAC
TGATGCATTGTTTGACATGTATAAGATCTCTATCATGCAGAAAAGATAGT
ATAGCCCCCTAGGGCTGATAGTGAATGATCATAGTATGTCAAAGTTCAAA
CTATGGAAACAATATTGACTGTTTTTTATCTAAAACCCACAGAAGAAGTA
TGGAGTTGTGCTTGATGAGGTGTCTGGGGTGTCTGCCTCAGAACTGCAGG
CTGTCAGGCTGTACGCTGACTACCTCGCAGCCAGCGACCAGAAAAGGTAC
ATGGTTTAAAATACATTTTCTCTCCTTAACTTCTAGTTGTACCATGTTTC
TTCCTCTTCTCCTTCCTTTTCCGTTCGAAACAAATAAGGTCAATGACCTG
AATCAGACGTCTGTCACCATGGTTGTGTTTCTTATGCTTACAGCGTACAA
ATGAATCATCGTTTTACAAGTAACTTGTAAAATCAATTACAACTCTTTTT
TAATATATATATAACAATATTCATGTAACTATATAATTGTTGACATATAT
ATATACAACATGTACCCAATACCGTAACTGTTTTTAAACCCTTGCAAAAT
TTTGCTACATGTTCCATACATACATGTATTAGTCAATTTATGTTACTTAC
TTACCAGCAAATGATTCAAAAGGTTAGATTCACTCTTCTTTTCTACTGTA
TCAAACACTTTGTTCATGAGCGCTTCCTGTTGATTCTCACCTGTACTGCA
CCTCCCCAGGGATGCTGTTCTGAAGGATCTGGAGGGGCAGATGAGCTCCA
GTCTGGATGTGGGGAACAACACCTTCCTCCTCATGGCCGCCTCCATCTAC
CTACATGAAGATGTGAGCAATCAGTCTTATGCCATAGGCTAATAGAAGGA
GATACAACTTACTAGTACAAGACTGAATATCTGCTGGAATATTGTTGCAT
ACGATAATTGCATCCTAGTGTCAGTCCTAATGCTATAAAACAGTGCCCTC
TGTCACAGATGGTAGTTACTGCACCATCAAGTGTAAAAGCAATATAATTG
CAAGGAGGTTTACTTTTCATTTTAAACCTCCTTGATAAAAGACACAATGA
AAGAAGATGTATAAACCTTGTGACAAAAAAATTATCAAATTTTAATTTGA
TGATTTTTTGTGGTGTTAAAATGATATCAGGTTATTTGCATTCAAATAGA
ATATAGAGAGGAGAAATGAGGCAAACAGGCCAAGAACATCACAACCTCTG
GACTAAGAATCAGCAAACATGTATTTGAACAGTATGATAGAAGACACATT
TCTTGTAATCAGCATATTCTAAGTTTGTTATCTCTCTTTTCACAGAATTA
TGATGCAGCACTAAGATGTCTACACCAGTCTGACTCCCTGGAATGGTATT
ATCTCTTTAATACTACTTTGAAATAAAAATCTGTTGATCTCCTCACAATT
GAACAAACTCACCCTCATCTAGAATTTGTGCTAGTAGTCTCATTATATAG
CTGCAGTCGATTTGTACATGTAGTATAGCCTAGCCTGGAGTTAAGCCTCC
TTAGCTTTAGTCCGCTACCCAAGCTCCACTCCTCGCCAATATGCTAGTAT
AGGCTGGGTGCCATCCTATTTCTACCGGGGGCTCCTACACTCACTACCCT
TTAGTGTAGTATTGTGTTATGTGAGATTTCAGCATGGCTTTGGTGAGTGC
TTTCCATGGCATATTGCACCAAAAGACTTAGATACAGATAATCTGATGAC
ACAAACACAGGACTGGTGATAGTAAGTCTATTGACTAGAGATTTCTTATT
GTATACTAACCTGAATCTGCACATGTTATTTCAGCTCAGCATTGACAGTG
CAGATTTACCTGAAGATGGACAGAGTGGACTTGGCAAAGTATGTAGTTTC
ACTTCATTTATAAATTTATTGCTACATTCATTACTACTACTATCATGTTT
ACTTCATGTGTATATAGTTTGAGAAGTCTATACAAAGGTCCTGTACGTTT
TTGTGTTAACAAAGTTCCATTCATCAAAGTGGCCCAAGGGCTAACTAAAC
AGAAATGGGTGCTATCTGATATGCCATATGGAGGTGGAAGGATTTTTAAC
TGTAATCCAAGATATTGAGGAAGCAACAGTGATCCTATTTTTTTCCTAAT
ACAGTACATGTAATACTTTGTTTTTGTCTTTCTTCGAAATTGATGAAAAA
TTTTGTTTCCTTAGGAAAGAGCTGAAACTGATGCAGGAGAAGGATGATGA
TGCAACTCTCACCCAGATGGCTCTAGCTTGGTTTAACATGGGGGTGGTGA
GTATACTGTAATTCTTGTTTCTTTCACAGTAACTTAATGTTCACTGTCTA
CACCAGTAGGGATATGTGCTGAAACGAATCCGGACTTATAAAAACGTTTT
ACTTACTTTTAGTTCAGGTAAAAAAAAGGAAACATAGCAAAATTTGTATC
GCAAAATTTGCGCTGAAAAAAGACAGAAGTATTTCCACTGCCTCAGATAT
GACTGCAGCGCGTGGTTCAGATATGCCGCATAACCACATCTTGCTTGGAG
CAACCTATTTATAAACCAAGCTAGCACCACACTGCACTACCTAGACTTCA
TACGAAATGTAATGATAATTTAGTATTTCATTCATAAAGTATTTCTAGCA
CACAGGTTGTCTAGACCTGAATCTAAACCTCTGGAACTGAATCCGGACCT
GAGCCTGAATGCAAGTTAAGGTATGCATACCCACCCATCACAAACCTCCT
AACAACCACTCACCCTCTCCTTCTTCACCCTGTAGGGAGGTGAGAAGCTC
CAGGATGCCTTCTACATCTTCCAGGAGATGATAGACAAGAACAGCGCCTC
CCCCCTGCTGCTGAACGGACAGGCCGCCTGCTGCATCCACCAGGGCAAGT
ACGAGGACGCCGAGGGCATCCTGCAGGAGGCCATGGACAAGGTGGGTGTA
GTTAATTTATGCCAAATACAAGTTACTCAAGCAATCGGATAGAATTTGGT
AATGGTTGCTGTCTTTCTCCAAAAAAAAAGATGACTGACCATTTCCAAAT
TTCGTGTAGTTGCTTGAGTAACTGTTATTTGGTGCATCTTATTACCTGGA
TGTCTAACCTTCATCAATGTGTACGTATGTGTGTAGTTGTTGTTTGTTTC
GTATAATAGGTGAACTGCCTTTAGACGCAACACACCAGTTTTGTAGAGTA
GGTACAAGCTGTGAAAGATCAAAATGATAGGTTTCCATCAGTCACACCGA
GATGGACCCCTCCTCTTTGCAACATGTGTGGTGGGATCTTTATCTTTATT
TATTGTCAAGTGTCACAGCACACTACACTGACTCTCGAGGCAGCACAGCT
GATGTTTGAGAGTCAACGATGGGATCTTAAACATGCTCTCCTCAAACAGG
GGGCCTCCAAAAAGATTGAAAAATCTTGATAATAGTCATATTTTTAGATA
GCCAGATACATCCTCTTACATGGCATGTCTGTATCCAAAATAGAAATCAT
GAATTCCCAATTATACTATTGTTGTTCATAGATATGATAATTTTAGTTTG
TCTGTTTTACAATGCTGATGCTACCATCTGGATTAATCATTCTTCCATTC
TGCGTTAATTTCTACAGGACAGTAATAATCCGGAGACTCTCGTCAACATG
ATCGTCCTCTCGCAGCATCTAGGCAAGGCCCCGGAGGTATGTCACTGGCA
AAGGCCCCCTAACCACTTCAGTTAACAGCATACATAAGTGGGCTATCTCC
AGCTTTAATGTTTATCCATCCAACTTTATTGTTTGGGAGCCCATTTTGTA
AATTTTTGTTGTTAGATCTGTGATTTTAAGCTGAAAAAAAACAACATTTT
CTTTGATTCTATGTCGTAATTATAGATTTTTTCTATGCCATGGGCGGGTT
GAATTTAATTATTTTCTGTCCATCAGGAAAATTTGTAACAAAGTTAAAAG
TTTATAATAGAAATAATGTAAATAATGATTATGCTGAAGTTGTTTCAGTA
GATATGTTTGCCAATCTTGTGCTATATAGGCAAACTGTGTTTTTTTGATA
CCACCAGATCAGCAACAGATACCTTTCCCAGCTAAAGACATCACACCAGA
ACCACCCGTTTGTTAAGGAGTTCACAGCTAAGGTAATGATTTATTTCAGA
TTCTCTACTGTAAATGCGAAAATTGTTGTTCTGTGTTCTGCCTGCCTACC
CCTTTGTCTAAGCGCTACATGTACATTTATTTCAACCGCCTTGGACTTAC
AGTTTTTACAAATTCTTTGGCACACTGGTAAGAGTTTACCAGTGTGCCAA
AGAATTTGTAAATACTGTAAGTCCAAGGCGGTCGAAGACGAAACAAATTT
TATTTCCAAGTGTCTATTTCCAAGTTACCATGGCATACCCCTACTTTTAC
ACAAAAGCTACCTTTCTCTTGAAATCACAAAACCCACAAATACTAGAAAA
AGTGGGACTTTTCGTCTTCCACTGCCTCCAAAAAAGAAGTCAAACCCAGC
TTGTTTAGATATAGCTAACAATTGTATTTAGTACCAGTAGCCTATTGTTA
CAACAAAGTCAGTCACAGTTTACTGACGCATGTATGCTTTTCCCTATGTT
TTTACCATGTATTTGCAATTAGCCCACGGGCATGAACTTGCAATAAACTT
CTACTATTATAATACAAATGTACGTTGTACAGTATTATGTGTTGCAGGCA
ACTGTTCTGTGTTCTGTAGCACCCTTGCTGTCTCGCTAGTAGGCAGTATG
TTACTATATTACTATCATGAACTCAAAACCACCACAAACACATTTTTTTT
TATCTTACCCCGAAATTAGATCACAGCCAACATGAATGCATTTGCAGTGC
TGCTGACTTGTCAGGTTAAAGTTTCGAGTCCTTTTTTGTACTAACACTAC
ACATATAAAGGATTTCCCTAATGAGAAATTTTCTCTCTCCTCTCAGGAGA
ATGAGTTTGAGCGTCTGATGAAGCAGTATGCACCAGCTTGAGGGACAAAC
TGGACAACTGTCATGTAAAAAACATCAGTGGACAAACATTTATGTATCTA
TCAACAACCAATCAGACCTTTACATGTATGTATCCAATGGGCATACTAAG
TCTTTCTTTTATCAAAGGCTGCAGGAACTGGACAACTGTAGAAAAATGTA
GAAAAACATCAACAGCCAAACATTTGAATGTTCTTGGTTGGGCACACTCT
TAGTGTTTCTTGTATCTTTGAGTACATGTATCAGAATTTATGGGACAGTC
AACCCACAATTCTGTCTATTATATTAACTTTCAGCCTGCAAAATTAGCCA
TTGGGTACCAATTTTAGGCAGCAGGGAGAAGGTTTAGATACACAAATCCA
GGAGTTTTCATGCTCTCAGTTTAAATTAACTCTTACATGTAACTTTGTAT
TTCCTACTCAGAGCCGCTGACAAAATGTTACAATTGGCAAACAGTGTTTG
GATGGAAATCTTAACATTCCAAAAACCATGGATGAGCTAAATTTTAAAAG
TAGAGCTCTGAGGTACAGCTGTACTTGCGTACCAGTATTGTCAAGACCTT
TTTCTTCACCAGAATAGCTCCGGTTATGAATAACAAGGCAGTGTAAACTG
AAACAAAGCTACATGTACTGTACCATGTATGACAAGAAATAAATCAAAGA
TTTATACTCAACCGTTGTG Coding sequence (CDS) from alignment at Sc0000002:7895974..7903242+ >transcript:BL97233_cuf6 ID=transcript:BL97233_cuf6|Name=transcript:BL97233_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=942bp|location=Sequence derived from alignment at Sc0000002:7895974..7903242+ (Branchiostoma lanceolatum)
CATTGTCCAATCACCGTACAGCATCAGTACTACTGCAACAAGATGGCGGC
CCAAGGCGACGTGGACGAACTTTTCGACATCAAAAACGCCTTTTACCTGG
GGAATTACCAACAATGTATCAACGAGGCACAAAAACTGAAGATTTCCTCC
CCTGATGTGAAGACAGAGAGGGATGTCTACATGTACCGGGCCTACATTGC
GCAGAAGAAGTATGGAGTTGTGCTTGATGAGGTGTCTGGGGTGTCTGCCT
CAGAACTGCAGGCTGTCAGGCTGTACGCTGACTACCTCGCAGCCAGCGAC
CAGAAAAGGGATGCTGTTCTGAAGGATCTGGAGGGGCAGATGAGCTCCAG
TCTGGATGTGGGGAACAACACCTTCCTCCTCATGGCCGCCTCCATCTACC
TACATGAAGATAATTATGATGCAGCACTAAGATGTCTACACCAGTCTGAC
TCCCTGGAATGCTCAGCATTGACAGTGCAGATTTACCTGAAGATGGACAG
AGTGGACTTGGCAAAGAAAGAGCTGAAACTGATGCAGGAGAAGGATGATG
ATGCAACTCTCACCCAGATGGCTCTAGCTTGGTTTAACATGGGGGTGGGA
GGTGAGAAGCTCCAGGATGCCTTCTACATCTTCCAGGAGATGATAGACAA
GAACAGCGCCTCCCCCCTGCTGCTGAACGGACAGGCCGCCTGCTGCATCC
ACCAGGGCAAGTACGAGGACGCCGAGGGCATCCTGCAGGAGGCCATGGAC
AAGGACAGTAATAATCCGGAGACTCTCGTCAACATGATCGTCCTCTCGCA
GCATCTAGGCAAGGCCCCGGAGATCAGCAACAGATACCTTTCCCAGCTAA
AGACATCACACCAGAACCACCCGTTTGTTAAGGAGTTCACAGCTAAGGAG
AATGAGTTTGAGCGTCTGATGAAGCAGTATGCACCAGCTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000002 | genome | Sc0000002:7895974..7903242 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97233_cuf6 |
| Biotype | protein_coding |
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