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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97243_cuf1 >transcript:BL97243_cuf1-protein ID=transcript:BL97243_cuf1-protein|Name=transcript:BL97243_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=226bp
MNTQGARDTWVSKYKLQYSDDAASWTTFGDFSNVDTEFDGSQNGNLLALN
EPVEARYVRIKPTLWNNNEIRLKLELYGCGAAGIDECASNPCQHGSTCVD
AVNWYRCYCSDGWTGDNCAQDINECNQNVCQNGGVCSNTPGSYSCTCPAG
FSGANCEATVLEGTNFVTCDFDTDYCGWQFGDENQLSVSREQQNGCGSYG
PSGDHTQADGSGSYLCMQSSSSDPQG Run BLAST on NCBI mRNA from alignment at Sc0000002:8247206..8250479+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97243_cuf1 ID=transcript:BL97243_cuf1|Name=transcript:BL97243_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3274bp|location=Sequence derived from alignment at Sc0000002:8247206..8250479+ (Branchiostoma lanceolatum)
TGGAAATGTGACCATAGCATAAAATTTCTGACTGTTACAAAATTTCATCC
TGTGGCTTGAGTAACTGTTTTGGGGCGTATCTTATCACCTGGATGTCTAA
CCTTAATCAATGGATCGATATTACTTTCACTTTCAGCTAAAGCGGATCGA
TATTACTTTCACTTTCAGGTGGACTTGCAGAGACGCACAGCTGTGACGGG
GATGAACACGCAGGGTGCGAGGGACACCTGGGTGTCCAAGTACAAACTGC
AGTACAGCGATGACGCGGCGAGCTGGACCACGTTTGGAGACTTCAGCAAC
GTAGACACGGTAGGAGGGTTTTTATAGATTTGCGTAGCAAAAGCTTTGTT
GGATCCGTTGGCATGTATGGTTGCTGCCATTTTATGACGTCGCAGGGTAG
CCATACCATTTCATTGGGAGGGGTGTTTTTTTCGCTAGCGTTCTATCTAT
CTTTAACAAACCGGCACTGTCAACTATCACACATTCAACTCAAATGAAAA
GAACAATTCAATACCAATTCATATCTATAAAAAGAGCCCGCCGTAATCGC
TAAACTAACATAGCAAACCTGACGTATATGTAGCACAAATACTTAACTCT
AGTTAGCTTATGATTCTTTAATAAACTTGTGGACGTACTGACTGATAAGT
ATCTACTTCCAGCTCAGTAAAGGACAAGAAATAGTCATGACTGTAAGTAC
CAGAGTTATCAATCACGGATTGATGTGTTCAAGAGAACCATTTTCCGAGA
ACCATAGTAGAATGAAACTCGTTGTCATCAAATTCTGTAGGAGCATCTTC
AGGATTCACTAATAGCTGTAAAGAACGGTTGTCTGCCACTGCTAGCCCTT
GGATCCAAACCTCTGCTTGGAGAATAACTTGCTGTCACTGTTTGTATTTC
AATAGCATAGCAACGCAAATATTACCGAAAATAGGAACAAATTTGTGTTG
AGAAACAATTCTATCATAATAGCGTTTTCATTGACATTTTTCAGGAGTTT
GACGGCAGTCAGAATGGAAACCTCCTGGCTCTGAACGAACCAGTGGAAGC
TCGGTACGTGCGGATCAAACCCACTCTGTGGAACAACAACGAAATCCGTC
TGAAGTTGGAACTCTACGGTTGTGGCGCTGCAGGTAAGGTTTCTGGCTCC
TCAAATATTCCCAAGCGTCTAGCCAACTTTCCACATCAGTATTCATGATG
AGTGTCCCATGTGACTTGTTTCCTTGTCCCAAGTTTGTCCCTCGACAATT
TTACACATAGACGAATTGCATTTTACATTTGCCATGTTCTCCCCCTAAAA
TGTCACTTAATCGTATATAAGGTTGCCACCCTCTTATGTCAGGTCCGCCG
CCGCATTCATCAACTATAACGTCCCTGGATTTCATATAGAGGCTGTTTTT
TACATCCCTTGTTGTAAATCATACAGTAGGCTGCAAAGTCCTGCACGATT
TTATCTCAGAATTGGTACACTTTATGTAGATGCCAAGTCTAGCAACGTTA
TCATCAAACCAATTGAATATAGTGGATCATAAGAGATGTCGTTATCTTTT
TCCCCAGGTATCGATGAATGTGCAAGCAACCCCTGTCAGCACGGTTCTAC
CTGTGTGGACGCTGTGAACTGGTACAGGTGTTACTGTTCAGACGGTTGGA
CGGGTGACAACTGTGCACAGGGTGAGACAAATTAGTCTGTTTCCATGCAA
CTTTTTAATGGGCTGTAGCGTGCGTAGTCCTCGTCACACATAGGACCTAC
TCCTACCTGCTATCATCAAGTCTCAAAAGAAGATGCGTCAGGCATTTCAG
CTATGAAGAAGACCACAGTTAGCTAAAAATTAGGTTTTCTCAAGAGTGCC
CTTGATAAACTGCCTCTGTCACACATAGCCGACCATGGTCTCTCAACCTT
CTTCAAACCATGGTTGGGAGTTAAGGCCCTGTCACACATAGCCGACCATG
GCCCCCTAACCTTCTCTAGACCACGGTTGGGAGTTAGTCGCGAGCAAGGT
CATCTATGTTTGGGAGTTGATCGGTGAGGTTGTCAAAAAGTATTTCAAAG
TCGTCTGCACCAACCGAATTTTGACAAATCGAACACGGGAAACTCTTAAT
CATCTTATATGCGAACTGAGGAACCATGGTCAGCCCTGCGTGACTGGGGC
TTTATCAGAGTTATTCTCTTCTGGCACTAGCTTGGTATCTAATGTGTGAT
GTTCTTCCTCAATTGTAGATATCAATGAATGCAACCAGAACGTTTGTCAA
AACGGAGGAGTTTGTTCCAACACTCCCGGGAGCTACTCCTGTACGTGCCC
TGCTGGGTTCAGTGGAGCAAACTGTGAAGCAAGTAAGTCTGACTTATATG
ATAATCATTCGGAAACTATTCCTTATCGCTCTGACATTTGTAATTGAATA
TTTAAAATAATCGCATTTTAAAGAAACGTACACTGACATGTTAAACAAAA
TGTTTAAGATAGTTGCAATAGAATATGATTATGATTTAGACTGACAAACA
CAACGAAACGAATCTTAACATAAAAGTGTAAATTATAGTAAAATGAAGAT
TGTTTTAGGCATTGTGTTACCTTCATGACATTGTTTCAACTTTGTATATT
GTTTCAATAGCTGTTTTAGAAGGAACAAACTTCGTGACCTGTGACTTCGA
CACGGACTACTGTGGGTGGCAGTTCGGAGACGAGAACCAGCTGAGTGTTT
CTAGAGAGCAACAAAACGGATGCGGTTCGTATGGCCCATCGGGCGACCAC
ACGCAAGCAGGTACAGATATTCTTTAAAACTGTATTTGCCCAGCAGTATA
CTCAAAGTGTTTCCGTTTTAATTATTAACTTTTTATGTACGGTGGAAATA
TTAATGTCAACTCTCATAATTCCGTCGGGTACCATAGACCGTCTCAGGTC
TTCAATCCACTTCAACTATCGGACTCTAGACACGTGTTTTCATGCATGTG
TGACGTCAGCAATGGGTCAAGGATGGAAGTCAATAGCGTCCCCCGTCCCG
TTTGAGAGAATATTGCTGCGACCTGATGTAGATGGCCTTCGTTTCTCCTC
TTACATAGTAATCCTGTTCGGTATCCAGAAATCTAGCACCCTAAAAATCT
GGGATTCAATATGAGTGTACTGTGAAACCTCTGATGACAAGTAACTTGGT
CGCCTGTTGTCTAAAAATCTGTTTTTTATATTTGTTCTTAATTGCCTTAA
ACGACACTATACCATTGCAGACGGATCGGGCTCCTACCTGTGCATGCAGA
GCAGCTCCAGCGATCCACAAGGCG Coding sequence (CDS) from alignment at Sc0000002:8247206..8250479+ >transcript:BL97243_cuf1 ID=transcript:BL97243_cuf1|Name=transcript:BL97243_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=678bp|location=Sequence derived from alignment at Sc0000002:8247206..8250479+ (Branchiostoma lanceolatum)
ATGAACACGCAGGGTGCGAGGGACACCTGGGTGTCCAAGTACAAACTGCA
GTACAGCGATGACGCGGCGAGCTGGACCACGTTTGGAGACTTCAGCAACG
TAGACACGGAGTTTGACGGCAGTCAGAATGGAAACCTCCTGGCTCTGAAC
GAACCAGTGGAAGCTCGGTACGTGCGGATCAAACCCACTCTGTGGAACAA
CAACGAAATCCGTCTGAAGTTGGAACTCTACGGTTGTGGCGCTGCAGGTA
TCGATGAATGTGCAAGCAACCCCTGTCAGCACGGTTCTACCTGTGTGGAC
GCTGTGAACTGGTACAGGTGTTACTGTTCAGACGGTTGGACGGGTGACAA
CTGTGCACAGGATATCAATGAATGCAACCAGAACGTTTGTCAAAACGGAG
GAGTTTGTTCCAACACTCCCGGGAGCTACTCCTGTACGTGCCCTGCTGGG
TTCAGTGGAGCAAACTGTGAAGCAACTGTTTTAGAAGGAACAAACTTCGT
GACCTGTGACTTCGACACGGACTACTGTGGGTGGCAGTTCGGAGACGAGA
ACCAGCTGAGTGTTTCTAGAGAGCAACAAAACGGATGCGGTTCGTATGGC
CCATCGGGCGACCACACGCAAGCAGACGGATCGGGCTCCTACCTGTGCAT
GCAGAGCAGCTCCAGCGATCCACAAGGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000002 | genome | Sc0000002:8247206..8250479 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97243_cuf1 |
| Biotype | protein_coding |
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