transcript:BL97258_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97258_cuf4
Unique Nametranscript:BL97258_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97258_cuf4

>transcript:BL97258_cuf4-protein ID=transcript:BL97258_cuf4-protein|Name=transcript:BL97258_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=307bp
LNGASAATCRADRTWSELVPTCTDINECTRNMCHSLATCTNTIGSFRCTC
ISGYTGDGLTAGTGCTDINECNATPKPCHDQAVCTNIPGSFTCNCTVGYT
GNGLAGANGCTELPCDRIDLTGWDLLFLVDSADLGGGQQTFVDDVRSFTR
ETIDELLNSDGVTRIGLVQYNDNQQTAFNLNQYQTKADILTAVDNINYLG
GGTYTGRAIHYARQVSFSPANGNRANRPDAMIVITDGVSLDPITYGSTAS
RHQGITVFAIGIGNRIDRATLEQIAENDQKVLQVSDTQESRDQAIRSLKG
WLCRGTC
Run BLAST on NCBI

mRNA from alignment at Sc0000002:3976424..3980214+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97258_cuf4 ID=transcript:BL97258_cuf4|Name=transcript:BL97258_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=3791bp|location=Sequence derived from alignment at Sc0000002:3976424..3980214+ (Branchiostoma lanceolatum)
CTGAACGGGGCCTCCGCTGCGACCTGCAGGGCTGACCGAACCTGGAGTGA
GCTTGTCCCAACTTGTACAGGTATGCAGTCAGCAACAGATAAAAAAAAGT
GTAGGGTACACTAAGGTACACCCATATACGTCGCGCGATCATCGTACGAT
TGCTAACTTAGGGCTTTTTTGGAACAGCCATGCATGTGCCCTGCAAAATT
CAGCTGTCTTCCTACAGAAAAAGCTGTGTTTTTTTCTTGTCGGTGGTTGA
TTCTGTCACAGCCTGCGTCAAAATCCTATGGCATCAACATCGTACCACGC
CCTTAAGCCCCCCTCTCACTGGACCCGCGGCACGCTGGCGGCGTCACTGC
GTCCTAAACTAGATTTGTGTTACCGGTAACCTTCACTTTGGGAATATAAT
TGAAAACGTGCAAGTATGACCAAAAGACAACAAAACACACAAAGCTAAAA
AAGATTCGTTTTTTGTTGATGAGATTCGTTGAGTGCTTTGTCAATTCGGT
CGACTGCAGCGACGCCGCCAGCGTGCCGCGGGTCCAGTGAGAGGGGGGCT
AACATGTGGCGTTAATGATGATAATGATAATGAGTCATGGCCTGAATATC
GTAGTTAGTACAATCCTCTTGAAAACGTTTTACCAACTTTCAATGGGAGC
TATGGAAAGCAATTTAAATCAATTTATCTAATTTTTATCTGTCCTAACCA
CAGTTAAAGTTGTATATTAATCATAGAACCCATGTTTCATAGTAATTATG
TATCTATCAACTTTGTGTATGTCAATAGTTGTATAGCACTGACTTAATTC
GATTTTAGGAAGAAGTCTCAAGTCGTAATGTTTCATATATTGCCTGTTTT
CGTAAAACATCACATTCATGAAGTTTCTTTATCTGTCAACCGATATCCTA
CACATGACTTTTAGTATTTAACTTCGGAATTTAAAAAAAAATCATTGCAT
TTCACAAAATGAATAACACATGATACAAACAAGAGAAAATCAAAGTAGAG
GAAAATTAACATAAGCCACGGATAAAAACAAAACAAAAGATAAGGTGGAA
ACAGAAATGGACTACTTTGTAAATATAAGTAATAGACTTCTATACAAAAT
GATAGTAATAACAGCCTCATTGGCAAATAAATATAACAAAATCAGTATCA
ACCAAAGATAACAAAATATTGAAATTAAACAGAACTTATGTTGACAAATT
AATATGAAAAGTCCATATCATCAGAATCATGAGAACATAAGTAACAAAAC
TTCGGAATTATAATTTTTACAGACATCAATGAGTGCACACGGAACATGTG
TCATAGCCTGGCTACATGCACCAATACTATTGGTTCATTTCGGTGTACAT
GCATCAGTGGATATACCGGAGATGGATTGACAGCTGGTACTGGATGCACA
GGTTAGTTGGAACTGCAAGAACGTTATGATGTTATGTTTCCAACATGGCC
ATATCTATCTATCTATAGCTATATCTATCTATCTACATCTATCTTTTTAT
GTATATATATATATATATATATATATATATATATATATATATATATATAT
ATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATCTAACG
CAATGCAATGCACAGAGCTAGGTTCTCATAAATTAACCAGTGACCCCCAG
ATGGATGAACAACTGAACTATTAAGAAAAAATGCTCCATATGGCTTGTGT
GGTGGCCGCCATCTTGAATTGTGACGAGTTGTGACGTCACAGGGTCGCTA
TGTTGGATGTGACAATTTTATTGGGGGTGTTTTTTTGGGTCGTTAATGTT
GGGTGTGACCATTTTGAGGGATGAGTGTTTTTTCTTGCTAGTTTCCAAGC
AGACGTTCTCTCTTTTTTAACAAATCAGCACACGACTATCACACATTCAA
CTCAAATAAAAAGAAAAATTCAATACCAATTCATATCAATTTCATAAAAA
GACTCCGTAATCGTTTAATTAACATAGAAAACCTGAAGTAAATGTAGCAC
AAATACTTAACTCTAGTTTTATTGGGATTTCAACAGATATCAATGAGTGT
AACGCCACACCAAAACCATGCCACGATCAGGCTGTTTGCACCAACATACC
AGGATCGTTCACCTGCAACTGCACGGTGGGCTACACAGGAAATGGATTGG
CAGGTGCTAATGGATGCACAGGTTAGTTGGAACTGCAAGAACGTTATAAT
GTTATGTTTCCGACATGGCCATATCTATCTATCTATCTGCACAGGTATTT
GAATTGAAAACACCTTTCTTACCATGTTATTCTTAACAAATTGATACTGG
TAGAAATGGAGTGCACCGTTCCCATCGAACACCACCATATCGAACATATG
GAACCCCCTGTTCTATTTCGAACACCTCCTCCAAAAGCTGCGTTAGTAGG
ACAGAAATGGCACGTGTTAGGCAAGATACGTATGTCTGTGACAGGAACGC
GTACAGTCTATTAAGTCCCATTAACAAAATGTTCGGGAGTGCCTGAGGCT
GGTGGTACCGTTTGTACTTAAAACTAAAAAAATAAATTTCATCGCAACTA
CCAACGACTCCTTGGACCTAATTCAAAAGCACATGGCAGTTGTAACTTTA
CTAGCCTCTACCAGGCTCCAAACGTGGCTTGAAAGAGTCGAACTCGGCAC
AAAAGACAGATAACATACCAGAGGAGTTGGCCAGCCGATACATGCAGTTT
GCCACTCGTCTGGAGCCTGGTAGAGGCTATAGGTATAACGTTACGTCCAT
TTACCCTTTTGTTTCTTAACTGGTTTCCGTTGTGACCTTTTTTGCTGGCA
GAACTTCCCTGCGATCGCATTGATCTGACGGGATGGGACCTGCTCTTCCT
TGTGGACAGCGCGGATCTGGGCGGTGGACAGCAGACCTTCGTCGATGACG
TTAGGAGCTTCACCAGAGAGACCATCGACGAGCTATTAAACAGCGACGGC
GTTACCCGCATAGGGCTTGTGCAGTACAACGACAACCAGCAGACGGCGTT
CAATCTGAACCAGTACCAGACCAAGGCTGACATCCTCACCGCCGTGGATA
ATATTAATTATCTAGGCGGAGGCACCTACACGGGAAGAGCAATCCACTAT
GCTCGACAGGTGCGTTTCGACAATGTATCCACGTACTTAGGCCAATATAT
ATGTAGCGCTTAAGAAAAGAGGGAATGTATTGTAAAAGTCAGATACGTTT
AACGTATGTTGTGCCAATTGATACGCCATTTACAACCACAGGTCTCTTTT
TCGCCTGCTAATGGAAACCGTGCCAACCGACCCGATGCGATGATAGTCAT
CACAGACGGCGTGTCTCTTGACCCTATCACGTACGGCTCGACGGCTTCCA
GACACCAGGGCATCACGGTCTTTGCCATCGGCATTGGAAACAGAATAGAC
AGGGCCACGTTGGAGCAAATCGCCGAAAATGACCAAAAAGTTCTCCAGGT
ATCGGATACACAAGAATCTCGCGATCAGGCCATTAGATCGTTGAAGGGAT
GGCTGTGCAGAGGTACGTGTTAGTCAAATGCCCACTTCTTACGTTGCCCT
TCTTTTGTTGAAATTCTGTTTGCGCAGTATAGTGTCATAGTCTGTATAGA
CTGACTGACAGTAGAATACGTTAACGTTCGCAGGATTCTTGTATTGATTT
AACCATCATTTGAGGCTTATATTGATTTGTGTTGACACTTCTCATCATAC
ATACAAACTATATATATTTTCAGCTGACTTATTACTTAAAC

Coding sequence (CDS) from alignment at Sc0000002:3976424..3980214+

>transcript:BL97258_cuf4 ID=transcript:BL97258_cuf4|Name=transcript:BL97258_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=924bp|location=Sequence derived from alignment at Sc0000002:3976424..3980214+ (Branchiostoma lanceolatum)
CTGAACGGGGCCTCCGCTGCGACCTGCAGGGCTGACCGAACCTGGAGTGA
GCTTGTCCCAACTTGTACAGACATCAATGAGTGCACACGGAACATGTGTC
ATAGCCTGGCTACATGCACCAATACTATTGGTTCATTTCGGTGTACATGC
ATCAGTGGATATACCGGAGATGGATTGACAGCTGGTACTGGATGCACAGA
TATCAATGAGTGTAACGCCACACCAAAACCATGCCACGATCAGGCTGTTT
GCACCAACATACCAGGATCGTTCACCTGCAACTGCACGGTGGGCTACACA
GGAAATGGATTGGCAGGTGCTAATGGATGCACAGAACTTCCCTGCGATCG
CATTGATCTGACGGGATGGGACCTGCTCTTCCTTGTGGACAGCGCGGATC
TGGGCGGTGGACAGCAGACCTTCGTCGATGACGTTAGGAGCTTCACCAGA
GAGACCATCGACGAGCTATTAAACAGCGACGGCGTTACCCGCATAGGGCT
TGTGCAGTACAACGACAACCAGCAGACGGCGTTCAATCTGAACCAGTACC
AGACCAAGGCTGACATCCTCACCGCCGTGGATAATATTAATTATCTAGGC
GGAGGCACCTACACGGGAAGAGCAATCCACTATGCTCGACAGGTCTCTTT
TTCGCCTGCTAATGGAAACCGTGCCAACCGACCCGATGCGATGATAGTCA
TCACAGACGGCGTGTCTCTTGACCCTATCACGTACGGCTCGACGGCTTCC
AGACACCAGGGCATCACGGTCTTTGCCATCGGCATTGGAAACAGAATAGA
CAGGGCCACGTTGGAGCAAATCGCCGAAAATGACCAAAAAGTTCTCCAGG
TATCGGATACACAAGAATCTCGCGATCAGGCCATTAGATCGTTGAAGGGA
TGGCTGTGCAGAGGTACGTGTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97258gene:BL97258Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97258_cuf4transcript:BL97258_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97258_cuf4-E1BL97258_cuf4-E1-1564476830-35374Branchiostoma lanceolatumexon
BL97258_cuf4-E2BL97258_cuf4-E2-1564476830-35376Branchiostoma lanceolatumexon
BL97258_cuf4-E3BL97258_cuf4-E3-1564476830-35378Branchiostoma lanceolatumexon
BL97258_cuf4-E4BL97258_cuf4-E4-1564476830-35380Branchiostoma lanceolatumexon
BL97258_cuf4-E5BL97258_cuf4-E5-1564476830-35383Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:3976424..3980214 +
Properties
Property NameValue
Transcript idBL97258_cuf4
Biotypeprotein_coding