transcript:BL97276_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97276_cuf3
Unique Nametranscript:BL97276_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97276_cuf3

>transcript:BL97276_cuf3-protein ID=transcript:BL97276_cuf3-protein|Name=transcript:BL97276_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=317bp
AVDPPMDLAVTDITDEGFKVTWSPSPDLDLEEYRVVVSKLDMTTVVNQTS
DEASFPVVGLSPETDYIIKVTALFSSGGWRSQSEEAVIAAATGATPTTTP
APASTTTTPAPAATTTTPAPAATTTTPAPAATTKQTSQMTTLLTTKPSTS
TVREAVGDEGSFADAVRSTAATTTEQTSGMTTVGLLTPTMQLGADGTKLT
SSRPPVGNRATPDQALGNSLDSIYAESVSPNPQDVLQILAQNADVSGDAA
VLGQPTSAAEEKAQMCRKAIKTLVSETGLAQTPQRVQKLAELSSLVIKSC
PGIPQEDKDMAMSVLKS
Run BLAST on NCBI

mRNA from alignment at Sc0000012:5030982..5037543+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97276_cuf3 ID=transcript:BL97276_cuf3|Name=transcript:BL97276_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=6562bp|location=Sequence derived from alignment at Sc0000012:5030982..5037543+ (Branchiostoma lanceolatum)
GCTGTGGATCCACCAATGGACCTGGCCGTAACTGACATCACCGATGAAGG
GTTCAAGGTCACCTGGTCTCCATCCCCTGACCTTGACCTTGAGGAATACC
GTGTGGTGGTGTCCAAGCTGGACATGACGACAGTTGTCAATCAAACCTCA
GACGAGGCATCCTTTCCTGTGGTTGGGCTGTCACCGGAGACTGATTACAT
CATCAAGGTGACAGCCCTGTTCTCATCAGGCGGTTGGAGGTCACAGAGCG
AGGAGGCAGTGATAGCGGCGGCCACAGGTAGGGACTAGTTGTTGATAGTT
GATGAAATCAAAGATAGAATTTTGTAAATAACTAAATCACCACAGCTATG
TTAGCTGATAGCAGTCACAGATAGCAATGATCTGGTATTAATCTATTAGG
AGAACATTGCTATTCTGCTAAAAAGTTAAACATGCCTCTGGTGATTTATA
AGGATTTATAATGATTAAAACATTTGCAAGAGAAATCTTTAAGGCTTCTT
TTCAAAGGAAGCATTTTGTCACGTGTGAGGAATTGTTCTGTTCTACATTT
ACTGTGTCGCTCAACCAAAGCCCTAAATTATGTATCCAATCTGAAGATTT
GTGTTTAAAAGTGTCTATAGTAAATTTTTGTACATTCAAGTACAGTCACT
GGAAAGGTGCAGTCTTCCTGTTGTGGTATTTCTCAGTAATGTTCTTCGCA
TGTTAAAAGAAGATTTTTTTTTAATTTGGCGAAGTAATCTGTTTAATCTG
AGTCTTTTCTCTGCCAGGCGCCACACCAACCACAACACCTGCACCTGCTT
CTACAACCACAACGCCTGCACCTGCTGCTACAACCACAACACCTGCACCT
GCTGCTACAACCACCACGCCTGCACCTGCTGCTACAACCAAGCAGACAAG
TCAGATGACCACCCTCCTTACCACCAAGCCTTCAACTTCGACCGTAAGGG
AAGCTGTGGGGGACGAAGGGTCATTTGCTGACGGTAGGTTCTCGTGTGTT
TAATGCAAGAGCACTAAAAGATTGGCGAAGTCATCATTAAGCAATGGACA
CTTTTATAATTTGTCTTCGTTGTCATTCGAGGCTGTGATGTTTTTATTAA
ACATATCAACGATTTATACAGTGGCATGATATTGTTTTCATCAAACCTGA
TGTTGGAGTGATGTCAACTGTCACAGTGGTGATTATATAGTTAATAATAC
CTCTTAAAATATCTAGATGTTGATATTTAGATTTATCAAATTTATTTTTT
CCCTCTACAGCTGTCCGATCAACAGCCGCTACTACAACTGAGCAGACCAG
TGGGATGACCACAGTGGGACTATTAACTCCAACCATGCAACTTGGCGCCG
ATGGTAGGTCTCTTCTGTTCACCATATTACTGGTCGTTCGGCGTAATACA
ATTGTATAACCAGCTGCTGCTGCGCCGCGTGCCTGCGAAGCTGGTGTGTT
ACGCTGAATGGCAGTTATACTGGCAATATAGTTACAGATACCATACCGAT
ACTGGAACCCTCATTGAGCACACTGAACACTTTGCACAAGGTTATACAAT
TATATATGAGGCATTGATACTGTTGTTCAACCAAATGAATGTACAATTTG
TCTAAGTGTACCACATTCATAAACAAATGCATAACTGTGTTAATTTTTTT
CTCACTGTTGTACTACGTGTACACAAATTGAATGATGTTCTTTTCAGAGA
TCAAAGATTTGATGAGGCATTGAAACTCAATGAATGTTTTACCATGGACA
GTAAAATCATAGTAGGATTGGTCAGTCGACCAATCGTAGGGAATTACGCT
GAGGAAGCGACCTTTGACCTCCGCTCGTCCCGTCTTCATATTTGCGGCAT
CCACCGTTCTGAACGGATGGGCCAGCCTCCCGCTCAACGTTCCGTCGGAA
ACTTTTCCCCTCTCGAGCTTTCACTATGAAGCATTTCAACCTACCGTGCG
GCGCTCCCCAACTACCGAGGCACACGAATCTGCCAAGAAACTTGCGGGTT
GCCGTCCTCGTTGGGCCCGACGCCGACCAGACAGCAGGGCCGCGGTGTGC
AACTACCACAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATGAAACCTCATTGGT
TGAATACAGGAATAAAAGACCTGTTGGTCATGATATCATATTTCGTCGCC
TCAATTCTTGTTAAACAAGACTTATGATCTCAAAATTTGAAAATATAGGA
ATCTTGTTTTTTTTGGCCTGCCTTGTTTTTATTTCGCCCTATCTCATTAA
TTTTGGAGTCTGCGGAGGATGTCATCCATAAAATTTACTTGCTGTGGCCT
AAGTGTAATTTGCTCTCTCAATTGCAACCCCTCATTTTGTTCAATTTTTT
ATTAAGAAAAAAATGCCCATGCTTCGATGCCATCAGCAAAGGGATTTAAT
GATCATACTCTTTCTGCTGTGCAGGAACCAAGTTGACCAGCAGCAGGCCG
CCGGTGGGTAACAGGGCGACACCTGACCAGGTATGTGGTTCTACAGCGGA
GGGGAGTTTGGGGGTGAATCATTTGGTTAAATGCCCCCTAGCCAATGGTT
GGAGACCTACCAAAATTGGATTCGTGTATTAATGACACGGCCTTATGAGC
TCAGTGGAAAGGGGTTATAAAGGACAACCTATCCACCCTGAATGTAAGTG
TATATGGGAGAAAGAGAGGGTATAAAAACTGAGAAGTACTGTAAAAAATG
TGGAAGTACAGTACAGTATACAGTCACTTCTTGCTGATTAACACACATTA
AATATTTTTAACAGACACAATAAATGTTACTGTAACAGTAACTGTTATTG
TGTCTGTTAAAAACATTTAATGTGTGTTAAGCAGCAAGAGGTGACGGTAT
ATATATAATATTATGTACTGTACTTTCAGGAGGAACATGAACACAGGATA
TGTTAGAATGCCTGAGTGTACTGCCCTTAAATTCCTGTGAAAAATTAAGG
CATATGTTATCTAATAATCTGACTGTACTGCCCTTTGTTCCTGTTCAATA
GGCTCTTGGTAACAGTCTGGACAGCATCTATGCAGAATCCGTCTCCCCAA
ACCCACAGGATGTGCTCCAGATACTGGCTCAGGTAAGTCACACCCAGTAC
TACCTTCTATCAGAATGATTGTTTTTCTCTCAACAATTATGGCACGGACC
TCCACAGAAGTTTAGAGCATGAAGGGGCAAAACCACTATAGTCCAGAAGG
GGGTGGAACCTCTTGCTTTTTGGCTTACCATACAAATATTGATGACAAAT
ATCGGCAATTTCTTGGGAGTTAAGCTTTGGATCTTACTTAAACTATGCGA
AATTAAATGCATTTACAGTAAATGTTGTTGTGTCAACATTTCATTTGCAA
TTATGCACTTTGATGTTTTTTTCCAGTAAGACTTCTACTAACTTTAAAGT
TATAGTAAATGCAATTATTGTATCTAATTCTAGATTCCTATCAAACTCAT
TCAATTTGTCATCTTTTTGGTGTGTGTGAGATTACTGTAGGATGAAGAAG
ACAAGCAAATTAACCTTCTCCCTGCTGCCTAACTCTGTTACCTAATAGAG
AATGGGGTGCCAAACGGCTACTTCAGTGTGCTAAAAGTTAACTGGACTTG
TGCATTAAGTATGTTAAGAACACACATGTTTTTACTAATTCTTTGTCCTT
AATACAACTTTGTTGTAAAAAAAACAACTTTATTCTGAGAAATTTGTCTT
TCATAAATGAGAAGAATGCGGATGTCTCTGGAGATGCTGCTGTGCTGGGG
CAGCCAACATCAGCTGCTGAGGAAAAGGCACAGGTAAGCAATGTTTGGTA
GTCTGTAACATTTTAAAGCGTTGGGAAACATTTGAGAAATCTGTTTCATC
TCTCTCTTGGAAACATGGGGACATTTTATGGAGTTTGGACCAGGATAAGG
AACAAAGGTGTTCAATCTTGTTATCCGTTGTTGTAGATGTGCAGGAAGGC
AATTAAAACATTGGTGTCTGAAACGGGTCTGGCCCAGACGCCGCAACGTG
TGCAAAAGCTCGCTGAGTTATCATCGCTTGTCATTAAGTCCTGTCCTGGC
ATTCCACAGGAGGATAAGGTAAAAGTCGCTGATGGGATTTTTACAAACTG
AACGGTTTGACTCCTTACCTACAACTATGACATGACTACTCATTTCATGC
TTGCAGCTCTGCAGAAAACAGTTATCTATTTGTGCCTATCTTTTTATGTA
TGGCATGATGCTTTGACTTTATTGTCCTTCATAGATTGTATTTAGGTCGT
CCTTTTTCAATTTTAACATTATGCAGCATAGATTTTGCACATCACGCAAT
TAGCTGATAATATTAATCATTTTGTTATTCTTGAATGAAATGAACAAATT
GAACATTTCACTTTGCACTTGTCCAAGTCTTTTGTCACAAAAGGCTTCTC
ATCAATTCATTTTTTTACCTAAGATGCATGTAAGTCGCTCTGTTTTTGAT
AGTGGAAATCTGCCCAAGATGTCTGCACATTCTGGTTGAGCAAGTCATAA
GTATCGAATCTTTCTAGATAAGTCTAATATAAAGCAGACCTTTAACACTT
ATCAAAGATTTAATATAGTATTACTTTCCTATAGGACATGGCCATGAGTG
TTCTGAAGTCCG

Coding sequence (CDS) from alignment at Sc0000012:5030982..5037543+

>transcript:BL97276_cuf3 ID=transcript:BL97276_cuf3|Name=transcript:BL97276_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=951bp|location=Sequence derived from alignment at Sc0000012:5030982..5037543+ (Branchiostoma lanceolatum)
GCTGTGGATCCACCAATGGACCTGGCCGTAACTGACATCACCGATGAAGG
GTTCAAGGTCACCTGGTCTCCATCCCCTGACCTTGACCTTGAGGAATACC
GTGTGGTGGTGTCCAAGCTGGACATGACGACAGTTGTCAATCAAACCTCA
GACGAGGCATCCTTTCCTGTGGTTGGGCTGTCACCGGAGACTGATTACAT
CATCAAGGTGACAGCCCTGTTCTCATCAGGCGGTTGGAGGTCACAGAGCG
AGGAGGCAGTGATAGCGGCGGCCACAGGCGCCACACCAACCACAACACCT
GCACCTGCTTCTACAACCACAACGCCTGCACCTGCTGCTACAACCACAAC
ACCTGCACCTGCTGCTACAACCACCACGCCTGCACCTGCTGCTACAACCA
AGCAGACAAGTCAGATGACCACCCTCCTTACCACCAAGCCTTCAACTTCG
ACCGTAAGGGAAGCTGTGGGGGACGAAGGGTCATTTGCTGACGCTGTCCG
ATCAACAGCCGCTACTACAACTGAGCAGACCAGTGGGATGACCACAGTGG
GACTATTAACTCCAACCATGCAACTTGGCGCCGATGGAACCAAGTTGACC
AGCAGCAGGCCGCCGGTGGGTAACAGGGCGACACCTGACCAGGCTCTTGG
TAACAGTCTGGACAGCATCTATGCAGAATCCGTCTCCCCAAACCCACAGG
ATGTGCTCCAGATACTGGCTCAGAATGCGGATGTCTCTGGAGATGCTGCT
GTGCTGGGGCAGCCAACATCAGCTGCTGAGGAAAAGGCACAGATGTGCAG
GAAGGCAATTAAAACATTGGTGTCTGAAACGGGTCTGGCCCAGACGCCGC
AACGTGTGCAAAAGCTCGCTGAGTTATCATCGCTTGTCATTAAGTCCTGT
CCTGGCATTCCACAGGAGGATAAGGACATGGCCATGAGTGTTCTGAAGTC
C
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97276gene:BL97276Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97276_cuf3transcript:BL97276_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97276_cuf3-E1BL97276_cuf3-E1-1564476830-113245Branchiostoma lanceolatumexon
BL97276_cuf3-E2BL97276_cuf3-E2-1564476830-113247Branchiostoma lanceolatumexon
BL97276_cuf3-E3BL97276_cuf3-E3-1564476830-113249Branchiostoma lanceolatumexon
BL97276_cuf3-E4BL97276_cuf3-E4-1564476830-113251Branchiostoma lanceolatumexon
BL97276_cuf3-E5BL97276_cuf3-E5-1564476830-113253Branchiostoma lanceolatumexon
BL97276_cuf3-E6BL97276_cuf3-E6-1564476830-113255Branchiostoma lanceolatumexon
BL97276_cuf3-E7BL97276_cuf3-E7-1564476830-113257Branchiostoma lanceolatumexon
BL97276_cuf3-E8BL97276_cuf3-E8-1564476830-113260Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000012genomeSc0000012:5030982..5037543 +
Properties
Property NameValue
Transcript idBL97276_cuf3
Biotypeprotein_coding