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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97285_cuf3 >transcript:BL97285_cuf3-protein ID=transcript:BL97285_cuf3-protein|Name=transcript:BL97285_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=924bp
LNHVQISGSGTLHSKPASGLSIEKSGGHISNVLITNCTGSGLEIFGPGSD
TTIIDSEVHQCQANTGIVIYGSQSEVSVSRVTVTNNKFATGGVSIFSWEQ
YVDRENFENVIGICDSEENVFLTAGAYFVYETKSGQCVKHIHAGKGKEIH
LRVIVARFSELRVYSDVNQQHQLGEVNNWNQTNDRIFHSPEVISLNLMLS
SDDDVYLEVQITRSPGPSRRTITDSVFCNNNGPVVNVKTASESQITISRS
ILTANTPLTLDNDDPQAAIVLDTINTQCAVQNNHFFGNSMKGVEFKSSGN
SELFLGHNVFDTNQGNGAVNLTDDGPGTSQTLIFGNNFVSNDAPSDFSIM
TLGNTTGSVKGNHFQRNIALYIVDWQVRENIRQSQIFTHNRLEHNSGQRP
GYKHTVAVSGPDVQLHQNVLINPANDAELIALNISSSANVDATGNWWGFN
QSTIVATRIRDSRDRPELPDVLFEPFLEEDPEKGVCRYSWFHEEQLGYCY
LYKGAAQTLEDAWDSCKEQYAQVVMKVSDKELHLLSAALQSQVDDVNFVP
EPFWMDQELSNTEEACRVYRQNAGVSDVLMAQCDSRYPFFCKLPVARGCP
NDCSHNGVCLETTCYCDRGWSGSDCSQPNCQDLDDCGEFGVCVGPNVCRC
RNGWQGRGCTVSYCSRFGTCKSCVQSVGCGWCDQTQSCESGLYGGPDVIP
CPTWFYHNCFTVGNKGLCSDDIEVVDCEYRQCNSSLSTTTVESCLRCQDV
EGCFKDAEDGYCKVWDQSRCPKGFVYPLYNDTTRIEKVLTGHNVKYVPSD
GAPLYHCQVRFSSWGATLFIQEGELDVQLGQVLSSPQAGGVLHKVEQVVA
EGAYTLVAAHPATLEDMFNYADFSQRVRLEPVVDFSTMEQEPPLSVIQNV
MRGNGTFQGDNTHVIDPGKSHKTK Run BLAST on NCBI mRNA from alignment at Sc0000012:2297017..2302004- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97285_cuf3 ID=transcript:BL97285_cuf3|Name=transcript:BL97285_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=4988bp|location=Sequence derived from alignment at Sc0000012:2297017..2302004- (Branchiostoma lanceolatum)
TTCTCAACCATGTCCAGATATCAGGCAGTGGGACTTTGCATTCCAAACCC
GCTTCGGGACTGTCTATTGAAAAGTCGGGTGGACATATCTCCAACGTGCT
CATTACGAACTGTACAGGGTCAGGTCTGGAGATCTTTGGTCCAGGCTCGG
ACACTACAATTATTGACTCCGAGGTTCATCAATGCCAGGCAAACACTGGG
ATCGTGATCTACGGGTCTCAGAGCGAAGTCAGTGTCAGTAGAGTTACGGT
GACTAACAACAAATTTGCCACCGGAGGGGTCTCCATTTTTTCGTGGGAGC
AGTACGTCGACAGAGAAAACTTTGAAAACGTCATCGGAATTTGCGACTCG
GAAGAAAACGTGTTCCTTACAGCCGGTGCGTACTTCGTGTACGAGACGAA
AAGCGGTCAGTGTGTGAAGCACATCCACGCGGGGAAGGGAAAGGAGATAC
ATCTGCGGGTTATCGTGGCAAGGTTCTCCGAGTTACGTGTGTATTCCGAT
GTAAACCAGCAGCATCAGCTAGGGGAAGTGAACAACTGGAATCAAACCAA
CGACAGAATCTTCCATTCACCGGAGGTCATCAGTCTGAACCTCATGCTGA
GCAGTGATGATGATGTGTACTTGGAGGTTCAGATCACCAGATCGCCAGGT
GAGTACAATATAATCATTTCTTGCAATATTTGTATCATGTCTTCAATATT
TCTATATAAAAGAACACATTTTAAGGGAACAGCATTTGCTCGTTTTTTTG
TCAGTTGCGGAAGAGAAGCTAGAAAAGAATTGCTATGGAAGCGTTTTTTT
CTTCATTTTCCAGGTCCCTCGAGACGCACGATCACTGACAGTGTATTCTG
CAACAACAATGGCCCTGTGGTCAATGTCAAAACCGCGAGTGAGTCACAGA
TTACAATTTCGCGAAGCATACTTACTGCAAACACACCATTGACATTAGAC
AATGATGACCCGCAAGCCGCCATCGTTTTGGACACTATCAACACCCAATG
TGCGGTCCAGAACAATCACTTTTTTGGCAACTCAATGAAAGGAGTTGAAT
TCAAAAGTTCTGGAAACAGCGAACTTTTTCTTGGACACAATGTGTTTGAC
ACCAACCAGGGCAACGGAGCCGTCAACCTTACAGATGACGGTCCAGGCAC
CTCTCAAACTCTAATCTTTGGGAATAACTTTGTCTCTAACGACGCCCCCT
CAGACTTTAGCATCATGACCCTGGGGAACACAACAGGAAGCGTCAAGGGA
AACCATTTTCAGCGCAACATTGCCCTGTACATCGTGGACTGGCAAGTCCG
GGAAAATATTCGTCAAAGCCAGATTTTTACTCACAACCGGCTGGAGCACA
ACAGCGGACAGAGGCCGGGGTACAAGCACACCGTCGCCGTGTCGGGTCCT
GACGTCCAGCTCCATCAGAACGTCCTCATCAATCCCGCAAACGACGCGGA
ACTCATCGCTTTGAACATTAGCTCATCTGCCAACGTAGATGCAACGGGCA
ATTGGTGGGGTTTTAATCAGTCCACGATAGTCGCCACGAGAATCAGAGAC
AGCAGGGACCGACCAGAGCTTCCAGATGTCCTGTTCGAGCCATTCCTAGA
GGAAGATCCCGAAAAAGGTGAGGAAATCTACTACTGAGTGCACACATGCA
ATAACTAGAGGCTCGATGTTTACCTTCATCTTTCATGAACACATTTCAAT
CTTTATGATACTTTCTGTTGCCTGTCTGTCTGTCTGCCTATTAGGAGTCT
GTCGTTATTCCTGGTTCCACGAAGAACAGCTTGGATACTGCTATCTGTAC
AAAGGTGCGGCTCAGACATTGGAAGACGCCTGGGACTCCTGCAAGGTATC
TAAACAATACCACAAAGTCCACACTATCTAACGTGTTAACGATCAGAATT
AAGTACAATGTAGTATTTGACAAGTCAATTTATCTGAAACTAGTCTGATG
GTATTATCATATCTCATTCAATGTAAAAAGATGATATTTCGTTGTTCTCT
TTCAGGAACAATATGCACAAGTAGTGATGAAGGTCTCAGATAAGGAGTTG
CACTTGTTGAGTGCTGCACTACAGAGTCAAGTAGACGATGTCAACTTCGT
GCCAGAACCATTTTGGATGGACCAGGAGGTGTGTGAATTAATCTCTAGTG
GAAGTGAATACTAGCCTAGTCTTGATCTTCTTGATCTTGATTTCTTACTG
GGCAACACCCCTCTTGTTGGGGTGAAGCGCCCAGGGGAGTGCGCTGGGCT
GGTCGAGAATATTTGGGTCGATGATTGACACAAGACATGTCCTTGATAGT
CTGCTCTTTTCAGCTCTCCAATACCGAAGAAGCTTGTCGGGTGTATCGGC
AGAACGCAGGTGTCAGCGATGTCCTCATGGCACAGTGTGATTCCCGCTAT
CCGTTCTTCTGCAAGCTGCCTGTTGGTGAGTAGAACACGCATGGGTTGGC
ACAGTGTTACTCTCTGACAACAATGGACATCCAGATAGAATATTGTTTAT
TATGAATTTATGAGAGTGTTCTTGGTACTATTGCCTTATCAGCATTCTTA
GATATTTGAGCGCATTGTTAAGACGAATCCCTACCTTCCCAAATGTCGCT
CTAACGAACTAAAGTCTTCCTGAAATCGATATGTCCTTTCGTTGTGCAAA
AACGGGAACTTTCTGCAATATCTTTGGTTTCTGTGATCATTGGCATCACC
CCGAGGTCACTGTAGCCGCGTGAATAAACGAGATGTACTTTGGCTGCAGT
GCTTTTGAACCGTGCCGATTGTGTGCATATGAAACAACTTCACCACGCCC
ATTTCTTAACCTAAACGAATCAATAAGGAAGCTATTTCAATTTGTTAAGG
CAGGCAGAGTATTTACGGCGAAAGATAAAGGCGACCAATTTTTTATTGAT
TAATTGGTCAAAGGGATATCTTTAGAACTTCATTTTATTTTTTTAGAGAG
TACAGTGTGTCCAATATGTCTTTAAAATTGCAATTTTCAATTTTCACTAG
CACGCGGCTGCCCCAACGATTGCTCACACAACGGAGTCTGCCTTGAGACG
ACCTGTTACTGTGACAGGGGCTGGAGTGGGTCGGACTGCTCCCAGCCCAA
CTGCCAGGATCTCGACGATTGCGGTGAATTTGGCGTGTGTGTCGGGCCTA
ATGTCTGCAGGTGTAGGAACGGCTGGCAGGTAACGAAGCATATCTTCTAT
ATTTTGGTACAATCATTGACACTTAATGTATAGTTGAAATTTTTAACTGN
GGTACAATCATTGACACTTAATGTATAGTTGAAATTTTAAACTGTTTTAA
GACTTTTTCAAAATATCGTCGTTGTCTTTTGAAATATCTCCAATCTCCGC
ATAACCCCGAGCTAACCCCGTGAAATTCAAAATGACCGCCGTAATTGGCA
AGAGCTAGTACCATATAGTTGTTGGTAAACAACATTGCTAATTTCAAGCA
AAGTAAATGAATGTTGGTAAGATGTACTGGTAAAATAAGGCCTGCTTGTG
TTGAACAGATCAATCGCTTCAGATTTTGCACAATGACACAAATTTCACCG
ACCTCGAAGAACACTCGTGGCGCCAGATGTGTTTAGAATTTCTTCTTAGC
TTTGGAACCTTTATTCTAGTGACTTGTATTTGACGGCCCATGAATTTGTC
CGTAGGGACGTGGCTGTACTGTAAGTTACTGCAGCAGGTTCGGCACGTGT
AAGTCCTGTGTCCAGTCCGTAGGCTGTGGGTGGTGTGACCAGACTCAGTC
CTGTGAATCCGGCCTGTACGGTGGGCCTGACGTCATACCCTGTCCTACAT
GGTTCTACCACAACTGCTTCACTGTCGGCAACAAGGGGCTATGTTCGGAC
GACATAGAGGTATGCGAAAAAAACTTCGCCTTTGATATATAGATAACATA
GAATAATATAGTTGTCAAATTCCATGTCTTGTCTGTGATATTTTTCCCAG
CAGAAGTTTCCAAGCTATAGCCCCAGTTCCTAATGTATCACCATTATCTA
CCGTTGACGGTTACTAAGTGGGTTTTCAATTGATCGTTGGGTTTCTCTTC
TTTCCGACAGGTTGTTGACTGTGAATATCGGCAGTGTAACTCGTCCCTGT
CTACCACTACTGTTGAGTCGTGTCTGAGGTGCCAGGATGTGGAAGGATGT
TTTAAGGACGCGGTGGGTTGGTTATATTCATTCAACCATGACGTTCAACT
ACAAATTTGAACATTATCCTACATTAACTATTTTGTAGCGTCATCTGGGC
TTTACGATATAGTCACCCCAACATGTATTTACATTTCACTATCTCGATAT
CGAACAAAACCTGTACCAAGAATGAAAAATACAACTAGAACGACATTGAC
GTAATGTTTTGTTTCCAGGAGGACGGTTATTGTAAAGTCTGGGACCAGAG
CCGATGTCCGAAGGGTTTTGTCTACCCCCTCTACAACGACACGACGCGCA
TTGAAAAGGTCCTGACAGGTCACAACGTGAAGTACGTCCCGTCAGATGGC
GCCCCTCTGTACCACTGTCAGGTCCGCTTCTCGTCCTGGGGAGCTACCCT
GTTCATCCAGGAGGGCGAGTTGGACGTGCAGCTCGGCCAGGTGCTGTCCA
GTCCTCAGGCGGGCGGCGTGCTGCACAAGGTCGAGCAGGTTGTGGCTGAA
GGTACGTTGGATGATGTGGTACATGTTCTACATACGTACGACTGATTTGC
TTGTAGCTAATACATCTATTTCTCTTTTACTTTACATTCCTCACTTTTGT
GTTGCTTCTGTTTTCATTAGGAGCCTACACTCTAGTTGCTGCGCATCCTG
CCACCCTGGAGGACATGTTCAACTACGCGGACTTCAGCCAGAGGGTCCGA
CTTGAGCCAGTCGTGGACTTCAGCACCATGGAACAGGAACCGCCACTTTC
TGTCATACAGAACGTGATGCGAGGGAACGGAACGTTTCAAGGAGACAACA
CGCATGTGATAGATCCTGGTAAGTCGCACAAAACAAAA Coding sequence (CDS) from alignment at Sc0000012:2297017..2302004- >transcript:BL97285_cuf3 ID=transcript:BL97285_cuf3|Name=transcript:BL97285_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2772bp|location=Sequence derived from alignment at Sc0000012:2297017..2302004- (Branchiostoma lanceolatum)
CTCAACCATGTCCAGATATCAGGCAGTGGGACTTTGCATTCCAAACCCGC
TTCGGGACTGTCTATTGAAAAGTCGGGTGGACATATCTCCAACGTGCTCA
TTACGAACTGTACAGGGTCAGGTCTGGAGATCTTTGGTCCAGGCTCGGAC
ACTACAATTATTGACTCCGAGGTTCATCAATGCCAGGCAAACACTGGGAT
CGTGATCTACGGGTCTCAGAGCGAAGTCAGTGTCAGTAGAGTTACGGTGA
CTAACAACAAATTTGCCACCGGAGGGGTCTCCATTTTTTCGTGGGAGCAG
TACGTCGACAGAGAAAACTTTGAAAACGTCATCGGAATTTGCGACTCGGA
AGAAAACGTGTTCCTTACAGCCGGTGCGTACTTCGTGTACGAGACGAAAA
GCGGTCAGTGTGTGAAGCACATCCACGCGGGGAAGGGAAAGGAGATACAT
CTGCGGGTTATCGTGGCAAGGTTCTCCGAGTTACGTGTGTATTCCGATGT
AAACCAGCAGCATCAGCTAGGGGAAGTGAACAACTGGAATCAAACCAACG
ACAGAATCTTCCATTCACCGGAGGTCATCAGTCTGAACCTCATGCTGAGC
AGTGATGATGATGTGTACTTGGAGGTTCAGATCACCAGATCGCCAGGTCC
CTCGAGACGCACGATCACTGACAGTGTATTCTGCAACAACAATGGCCCTG
TGGTCAATGTCAAAACCGCGAGTGAGTCACAGATTACAATTTCGCGAAGC
ATACTTACTGCAAACACACCATTGACATTAGACAATGATGACCCGCAAGC
CGCCATCGTTTTGGACACTATCAACACCCAATGTGCGGTCCAGAACAATC
ACTTTTTTGGCAACTCAATGAAAGGAGTTGAATTCAAAAGTTCTGGAAAC
AGCGAACTTTTTCTTGGACACAATGTGTTTGACACCAACCAGGGCAACGG
AGCCGTCAACCTTACAGATGACGGTCCAGGCACCTCTCAAACTCTAATCT
TTGGGAATAACTTTGTCTCTAACGACGCCCCCTCAGACTTTAGCATCATG
ACCCTGGGGAACACAACAGGAAGCGTCAAGGGAAACCATTTTCAGCGCAA
CATTGCCCTGTACATCGTGGACTGGCAAGTCCGGGAAAATATTCGTCAAA
GCCAGATTTTTACTCACAACCGGCTGGAGCACAACAGCGGACAGAGGCCG
GGGTACAAGCACACCGTCGCCGTGTCGGGTCCTGACGTCCAGCTCCATCA
GAACGTCCTCATCAATCCCGCAAACGACGCGGAACTCATCGCTTTGAACA
TTAGCTCATCTGCCAACGTAGATGCAACGGGCAATTGGTGGGGTTTTAAT
CAGTCCACGATAGTCGCCACGAGAATCAGAGACAGCAGGGACCGACCAGA
GCTTCCAGATGTCCTGTTCGAGCCATTCCTAGAGGAAGATCCCGAAAAAG
GAGTCTGTCGTTATTCCTGGTTCCACGAAGAACAGCTTGGATACTGCTAT
CTGTACAAAGGTGCGGCTCAGACATTGGAAGACGCCTGGGACTCCTGCAA
GGAACAATATGCACAAGTAGTGATGAAGGTCTCAGATAAGGAGTTGCACT
TGTTGAGTGCTGCACTACAGAGTCAAGTAGACGATGTCAACTTCGTGCCA
GAACCATTTTGGATGGACCAGGAGCTCTCCAATACCGAAGAAGCTTGTCG
GGTGTATCGGCAGAACGCAGGTGTCAGCGATGTCCTCATGGCACAGTGTG
ATTCCCGCTATCCGTTCTTCTGCAAGCTGCCTGTTGCACGCGGCTGCCCC
AACGATTGCTCACACAACGGAGTCTGCCTTGAGACGACCTGTTACTGTGA
CAGGGGCTGGAGTGGGTCGGACTGCTCCCAGCCCAACTGCCAGGATCTCG
ACGATTGCGGTGAATTTGGCGTGTGTGTCGGGCCTAATGTCTGCAGGTGT
AGGAACGGCTGGCAGGGACGTGGCTGTACTGTAAGTTACTGCAGCAGGTT
CGGCACGTGTAAGTCCTGTGTCCAGTCCGTAGGCTGTGGGTGGTGTGACC
AGACTCAGTCCTGTGAATCCGGCCTGTACGGTGGGCCTGACGTCATACCC
TGTCCTACATGGTTCTACCACAACTGCTTCACTGTCGGCAACAAGGGGCT
ATGTTCGGACGACATAGAGGTTGTTGACTGTGAATATCGGCAGTGTAACT
CGTCCCTGTCTACCACTACTGTTGAGTCGTGTCTGAGGTGCCAGGATGTG
GAAGGATGTTTTAAGGACGCGGAGGACGGTTATTGTAAAGTCTGGGACCA
GAGCCGATGTCCGAAGGGTTTTGTCTACCCCCTCTACAACGACACGACGC
GCATTGAAAAGGTCCTGACAGGTCACAACGTGAAGTACGTCCCGTCAGAT
GGCGCCCCTCTGTACCACTGTCAGGTCCGCTTCTCGTCCTGGGGAGCTAC
CCTGTTCATCCAGGAGGGCGAGTTGGACGTGCAGCTCGGCCAGGTGCTGT
CCAGTCCTCAGGCGGGCGGCGTGCTGCACAAGGTCGAGCAGGTTGTGGCT
GAAGGAGCCTACACTCTAGTTGCTGCGCATCCTGCCACCCTGGAGGACAT
GTTCAACTACGCGGACTTCAGCCAGAGGGTCCGACTTGAGCCAGTCGTGG
ACTTCAGCACCATGGAACAGGAACCGCCACTTTCTGTCATACAGAACGTG
ATGCGAGGGAACGGAACGTTTCAAGGAGACAACACGCATGTGATAGATCC
TGGTAAGTCGCACAAAACAAAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000012 | genome | Sc0000012:2297017..2302004 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97285_cuf3 |
| Biotype | protein_coding |
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