transcript:BL97296_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97296_cuf0
Unique Nametranscript:BL97296_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97296_cuf0

>transcript:BL97296_cuf0-protein ID=transcript:BL97296_cuf0-protein|Name=transcript:BL97296_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=429bp
YYLQTSRDVKRLEATARSPVFSHVSTTLSGLSTLRVMKRQDSFLEQFHHC
LDYHSSGWFLFISCARWFQIRLDWLCAAFVATVAFGAILASDSVSRGLVG
LSLTQAIMLMGVFQWVVKQSAEVENQMTSVERVVSYTHLEKEPPLILHPR
PPSNWPSQGRIQLDNVTMRYGSKLTPTLNNVSVIISPGEKIGIVGRTGAG
KTSLIMSLFRLVESDGTVMIDGYITTEVGLNDLRSRMTVIPQDPVLFKGS
LRQNLDPFSKHSDTELWAALEEVQLKQVVEKLPEGLETGLIEFGANFSLG
QRQLLCLGRAILKKSRIVVLDEATANVDPLTDGLILRMIEKKFADCTVLT
IAHRLHSIIDCNKVMVLQDGGIVEFDEPSVLLFREGSVFRNMVGDSAQFI
LRMRQVLQERRRSKTPGPGHKLRNNTMTP
Run BLAST on NCBI

mRNA from alignment at Sc0000149:325438..330647-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97296_cuf0 ID=transcript:BL97296_cuf0|Name=transcript:BL97296_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5210bp|location=Sequence derived from alignment at Sc0000149:325438..330647- (Branchiostoma lanceolatum)
ATTACTACCTGCAGACATCACGAGATGTCAAGCGCCTCGAGGCAACAGGT
GAGTCTGCTTTACACATCTGAGACATGGCGTCAAGTCAACGTTTTATGAC
ACTGCTTCCAGGATTCAAGCAAACATTACTTTTTGGCAAGCTTCACATAT
GAGTCAACAACAAAAAAGTCAGTCCCATATTTCTCACATGATATTTCAAC
ATATAATCTCACAAGGGGATAATGCCAAGATAACACATTTATCAAATTTC
TTGTAAGTCTCATAGATCTTAAATGATATCCTGATCTACATATACATGTA
GGTATTGGTCACATGCACTGGATGTAATATTATGACACTTTAAAGTTGTA
GACATACTGGAAAGTATGGTTGCAGCAGAAAATAGTTTGAAGGCCTTGTC
CAACTTGCAATTGTTGCTTTCTAATATATCCCCTTAAAAAAAGAAAATAA
ACCATGATCTTTATTTGATCTCTTTCAGCAAGGAGCCCAGTTTTCTCGCA
TGTATCCACCACCCTCAGTGGCCTGTCTACACTACGGGTCATGAAGAGGC
AAGACTCTTTCTTGGAACAGTTTCATCACTGCCTAGACTACCACAGGTAC
GTGTAGTGGTGCGGATCGGTCCGGCCGGACCGGTTCCGGACTTGTAAAAC
GTTTAGGTTCAAGTCCAAAAAAACCTAAACGTCTGGAAACAAGTCCGGAC
TTGAAAAAAAATTCTCTCACTCATACACTCCTTTTTGTTTTAAACCATCT
TAAACCTTCCTTAAATCGTGAAATTTGCACTAGAAAAATATTAAAACATT
GCTGTTTTTGTGTTTATAACTGAACTTTTGTGTTAATTACTGACTGTATA
TAATTCCGTATATATAGTTTTCAAATTACATGTAAAATATCTGCCAATAT
GCAATTTTACATGTAACACGAAAAAATATTCCAAAATTATTGTTCAGGTC
CGGACTTTCAAGTCCGGACCTGAACCTAAACCTCTGGACTCGAGTCCGAA
CCTAAACCTAAACTCGGGTTTAGATCCACACCACTAGGTACGTGTATAAT
CAAGTAGTGTAGAAGTCAGTAAATACATAAAGACAATTTACATAACAATT
TAGAATTCACATAACTTTCTTATAACCTCCATGAAATGTGTCATGGAGGT
TATATTTTCAGCAGTGTTTGTCTGTCTGTAAACAAGATAACTCAAGAACA
GCTAATGAAATGGATTGGTTTCATACTTGGTGTGTTGGTAGGGTGTGACA
AAAACTGGAAACCATTTTATTTTGATCCCCTTAGCAACTTTCCTTGGTAC
TGCAGCAGAACTCCTGGGTTTGACATCTTGTGTTCTGGACGTGCTATGGT
CACAATTTTTATAGTATAAAGCTGTTTACTGTATGTGTGAAAATCTGAAA
ATTTGGTGGCTATAAAGTAACTGAGGAGTCAGTGAGGACTGATGACTGTA
ACTGCATGTAAGTAATGACCTTGTTATATTAATGTCAGGAGGTGGTGATA
ACAAGGAACTGATATCGCTCTGTTCTGCATTTTCTCCCAGTTCAGGGTGG
TTCCTCTTCATCTCCTGTGCACGGTGGTTCCAGATCCGACTGGACTGGCT
CTGTGCAGCCTTTGTTGCCACAGTGGCTTTTGGTGCAATTTTGGCTTCAG
ACAGTAAGTTGGTCAAGATCGTCACCAATGTAAACAATCTGTGCCATATT
TGCTGTCACAATGGCTTGTGAAATGCTAATTTCAAAGTCTAAATTTGGAC
CCCATGAACACAAAATATTTCACAAAGTATGAACTAAAAAATGCATGTCC
CTAAACTATTCAATATGCAATAGACTGTATACTGTCAAGGTTAGATCTCC
CTCCTTAAATACATTCATGAGATCTAATGGGATTGACATGAATATATTAA
GTAGTTTTTGAACATTAGAAAGTCTGAGCCAGCTTTTGTTTCCACCTGCA
GGTGTGAGTAGAGGTCTGGTGGGCCTGTCCCTCACCCAGGCCATCATGCT
GATGGGGGTGTTCCAGTGGGTCGTCAAGCAGAGTGCAGAGGTGGAAAACC
AGGTGAGAGCATTTAGCCATTAAATGCATGGTTCTACAACAATCTCAGCT
GGTGCTAATAACACTTGCCAAAGGAACTTCAGCACCAAGGGCAAAGACCG
ATATCTGACTCTGTACTGGAGGAAATGGTTTCTTTCGCATTTGTTCCTAG
AATATCTTAAATATCATGTTACTTAATTGTGATATTTGTGGGTAGGGCTT
GGTCCAGCGAGCAAGTAAGCATACAAGCAAGGATTGGTAGAGATCTGAAT
CTTGAAAGGATTCTTCACCAGTTACATTATGTACATGGGTTCCTTTACGC
TGCAAACTACAGTATAAGCATATCAATGATACTGCAAAGATGAACTGTGG
GGGTTACAATTTGTGAGGAAAGTAGCACACTTCTGTAGAGGTTTAAACTT
TCATGGGTGCTGTCTACTCTACTTTATTGTATTGATTCATCTGAGCTTGT
TTACACAGNTATTGTATTGTGTTGATTCATTCAACATGTTTGCACAGATG
ACATCAGTGGAACGGGTGGTGTCCTACACCCATCTTGAGAAGGAACCTCC
CCTAATCCTTCACCCTCGTCCACCCTCTAACTGGCCCAGCCAAGGCAGGA
TTCAGCTGGATAATGTCACCATGCGATATGGCAGCAAATTGACACCCACC
CTGAACAATGTGTCTGTCATCATTTCACCAGGGGAAAAGGTGAGGTGTAA
GGAAAATGGGAGTAAGCTAAAACTGATGTGAAAAGATGATGGCACAGCAA
ATTAGATGACAAACTGTACTTCTGACAGTTGTAAGAAGAGTTTGATTCAA
AGCTGTATATGTGGCATGGCTGTAGAGAATGAAGTTTCAACTTGCAATTA
CTGAGCCTGTCTGTGAAGCTCTACCTGTTTAGAGCCTTTAGGATCTATAG
AAAGTCTTTAAGTGCCTCTATCTATTTCTACATTCGTCAATTGACTTTCT
TTTTTTTGCCCCACATTGGACAACAATAAAGTAAAGCTTACAGTAAAGCA
GTAATCCCTAACTGAGGTGAATCACGATGCTGTTTCAAGCGGTAGAGCAA
TGTGGTTTTGCTATGGATCACGTTTTCAAGCAAGCACACTCTAAGTCTTT
CCATACTCCTTTCAGAAGTGTGTTGGGTTCTTTTACGTGCATAGGTTTGA
TACTTGAGGCTAATACAATATGGCTACCTCACTAGTGAGACTTTTATAAG
TACACTCATGGCTACCACACATTTCCCCATTTTTCTTGTCATGTTGACCA
TAGCCCAAGTGTAACGAAATGTTTGTTTTTTTTGGTAAAAATTAATGTCA
TCCACAAAATCTACATACTGTAGCCAAAAACCCAAGCAAAAAGTTTGGTT
AAGTGTGATAAAACTGTGCTACACTAATTTACTTTCTTATGACTAACTGC
CACAATTTCTCTCAATATGCCAGATTGGTATTGTCGGTCGCACAGGGGCA
GGAAAGACATCTCTGATCATGTCCCTGTTCCGTTTGGTGGAGTCTGACGG
CACTGTAATGATTGACGGCTACATAACAACAGAGGTAGGACTGAATGACC
TTCGTAGCCGCATGACAGTCATTCCACAGGTCAGTGGTACAACATGTACT
TCTGTATAAGCCCATATGTTCGATTTTTTGGGGATAAAATTCTCTTGAAA
ATAGCTCTGCACTGAGTAGAAGACAATAATGGCATTTATTCATTATGATG
AAATTTGAATCACTTCTGGGGTTACATATGAATAGAATGATTCTAACCTC
CATTGTTTTTCCTCATGTGTAAATTTGTGTAGGATCCTGTCCTTTTTAAA
GGCAGCCTACGACAGAACTTGGACCCTTTCTCCAAACACTCAGACACAGA
GCTGTGGGCAGCCCTGGAGGAGGTAAACATTCTTTTAGTGTACAAAACAA
ATGCATACTAGTAGTTTACAACACAGGTCACAACAACAACTACCCTTTTT
CCTGCTATGGGCTCAATACACAGGCACAGTACAAGTATATATACACAGGA
ATGACTACAAAGGTCAGTTATCCTAGTACTAATATGTGTTTGCTTTGATA
AAATCACATTATGCTTTGCACAGCACATCATTGCAGCTGGACATTTTTCT
ATTATTTCTATATTATAGGTCCAGCTGAAACAAGTGGTGGAGAAACTGCC
TGAGGGACTGGAGACTGGGCTTATTGAATTTGGTGCTAACTTCAGTTTGG
GGCAGAGACAACTGCTATGTCTGGGAAGGGCTATCCTGAAGAAGAGTCGC
ATTGTTGTGCTGGATGAGGCCACTGCTAATGTGGACCCTCTGTGAGTTTG
TACATCATTCAGACAACACATTAACACAAGTTGGCTCTTGTTGGATAGAT
ATTTCTGGAATCAAACTGTTGGATTTTGCTGAACTGATTAAGATGTATCT
CATCTAGTTGCAACAAGGAGAATTTAAGTGCCAGAGGACTGAAACATACC
AGGGCATCACCCATCTAAACGAAAATAGACCAGTGAATTCTTAACCTTGT
TTTTATGTTTGCAGGACAGATGGTCTGATCCTGCGGATGATTGAGAAGAA
GTTTGCAGACTGCACAGTCCTGACCATTGCTCACAGGCTCCATTCCATCA
TTGACTGCAACAAAGTCATGGTAGGTCTTCCTTGGATACAACATACATGT
ACTGCAGTTTGACATAGCATTTGGACCACAATCCCTCCTCCTGATCCAAC
CTTTCAACAATAAAAAGTTAACTTCAGCATTGGTGTATAATGGTTTTAAA
ATCTTTGGTTTATCAAAAACATAGAGAGGGCCATCTTAACAGTGAAACGT
TTTTTTTTCAGATTGACATACATTGTACCGGTACCATTGTGGTCTAATGG
ACATGTTGATATTGAAATAACCATACCCCTTGATTCAAAAGATAAAGATG
TCATAACTTTCAAATTTGTCATCAGTCCTATCATTTTTATGTTTATATAT
CAAAACTTTTACTACAGGTTTTGCAAGATGGCGGAATTGTTGAGTTTGAC
GAGCCATCTGTGCTGCTTTTTCGAGAGGGCAGCGTGTTCAGAAACATGGT
GGGAGATTCTGCCCAGTTCATTCTGAGGATGCGCCAAGTTCTCCAGGAGA
GGCGCCGATCAAAGACGCCTGGTCCAGGTCACAAACTCCGTAACAACACC
ATGACACCTG

Coding sequence (CDS) from alignment at Sc0000149:325438..330647-

>transcript:BL97296_cuf0 ID=transcript:BL97296_cuf0|Name=transcript:BL97296_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1287bp|location=Sequence derived from alignment at Sc0000149:325438..330647- (Branchiostoma lanceolatum)
TACTACCTGCAGACATCACGAGATGTCAAGCGCCTCGAGGCAACAGCAAG
GAGCCCAGTTTTCTCGCATGTATCCACCACCCTCAGTGGCCTGTCTACAC
TACGGGTCATGAAGAGGCAAGACTCTTTCTTGGAACAGTTTCATCACTGC
CTAGACTACCACAGTTCAGGGTGGTTCCTCTTCATCTCCTGTGCACGGTG
GTTCCAGATCCGACTGGACTGGCTCTGTGCAGCCTTTGTTGCCACAGTGG
CTTTTGGTGCAATTTTGGCTTCAGACAGTGTGAGTAGAGGTCTGGTGGGC
CTGTCCCTCACCCAGGCCATCATGCTGATGGGGGTGTTCCAGTGGGTCGT
CAAGCAGAGTGCAGAGGTGGAAAACCAGATGACATCAGTGGAACGGGTGG
TGTCCTACACCCATCTTGAGAAGGAACCTCCCCTAATCCTTCACCCTCGT
CCACCCTCTAACTGGCCCAGCCAAGGCAGGATTCAGCTGGATAATGTCAC
CATGCGATATGGCAGCAAATTGACACCCACCCTGAACAATGTGTCTGTCA
TCATTTCACCAGGGGAAAAGATTGGTATTGTCGGTCGCACAGGGGCAGGA
AAGACATCTCTGATCATGTCCCTGTTCCGTTTGGTGGAGTCTGACGGCAC
TGTAATGATTGACGGCTACATAACAACAGAGGTAGGACTGAATGACCTTC
GTAGCCGCATGACAGTCATTCCACAGGATCCTGTCCTTTTTAAAGGCAGC
CTACGACAGAACTTGGACCCTTTCTCCAAACACTCAGACACAGAGCTGTG
GGCAGCCCTGGAGGAGGTCCAGCTGAAACAAGTGGTGGAGAAACTGCCTG
AGGGACTGGAGACTGGGCTTATTGAATTTGGTGCTAACTTCAGTTTGGGG
CAGAGACAACTGCTATGTCTGGGAAGGGCTATCCTGAAGAAGAGTCGCAT
TGTTGTGCTGGATGAGGCCACTGCTAATGTGGACCCTCTGACAGATGGTC
TGATCCTGCGGATGATTGAGAAGAAGTTTGCAGACTGCACAGTCCTGACC
ATTGCTCACAGGCTCCATTCCATCATTGACTGCAACAAAGTCATGGTTTT
GCAAGATGGCGGAATTGTTGAGTTTGACGAGCCATCTGTGCTGCTTTTTC
GAGAGGGCAGCGTGTTCAGAAACATGGTGGGAGATTCTGCCCAGTTCATT
CTGAGGATGCGCCAAGTTCTCCAGGAGAGGCGCCGATCAAAGACGCCTGG
TCCAGGTCACAAACTCCGTAACAACACCATGACACCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97296gene:BL97296Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97296_cuf0transcript:BL97296_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97296_cuf0-E1BL97296_cuf0-E1-1564476830-347674Branchiostoma lanceolatumexon
BL97296_cuf0-E2BL97296_cuf0-E2-1564476830-347671Branchiostoma lanceolatumexon
BL97296_cuf0-E3BL97296_cuf0-E3-1564476830-347669Branchiostoma lanceolatumexon
BL97296_cuf0-E4BL97296_cuf0-E4-1564476830-347667Branchiostoma lanceolatumexon
BL97296_cuf0-E5BL97296_cuf0-E5-1564476830-347665Branchiostoma lanceolatumexon
BL97296_cuf0-E6BL97296_cuf0-E6-1564476830-347663Branchiostoma lanceolatumexon
BL97296_cuf0-E7BL97296_cuf0-E7-1564476830-347661Branchiostoma lanceolatumexon
BL97296_cuf0-E8BL97296_cuf0-E8-1564476830-347659Branchiostoma lanceolatumexon
BL97296_cuf0-E9BL97296_cuf0-E9-1564476830-347657Branchiostoma lanceolatumexon
BL97296_cuf0-E10BL97296_cuf0-E10-1564476830-347655Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000149genomeSc0000149:325438..330647 -
Properties
Property NameValue
Transcript idBL97296_cuf0
Biotypeprotein_coding