transcript:BL97299_cuf7 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97299_cuf7
Unique Nametranscript:BL97299_cuf7
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97299_cuf7

>transcript:BL97299_cuf7-protein ID=transcript:BL97299_cuf7-protein|Name=transcript:BL97299_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=296bp
MAAGGDDRVQYYRYKGIPLPSHLVPEDMDAIQDFAVRDDDVFIVTYPKSG
TAWLQRIVSLLRFGGDVSKTDMKEQDKLVPYFEQKCGDSATFRELPEAPS
PRLLKSHLNFSHAPVQLAQGKGKVIYVARNPKDLAVSYYYFHFMVTTLKN
PTSWEQFLQDFVNGEVSRGAWHDHVLGWWEQKDSPNVLFLRYEDLQKNTR
KQVGKVSEFLQWPVTPEVIGKVVEQSKFQKMATNPATNKVEGKEAKAGIF
DSSKGTFFRKGTVGDWKSHFSDEQSQWFDTFYQEKLGPTGLQFDFE
Run BLAST on NCBI

mRNA from alignment at Sc0000245:343455..347380-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97299_cuf7 ID=transcript:BL97299_cuf7|Name=transcript:BL97299_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=3926bp|location=Sequence derived from alignment at Sc0000245:343455..347380- (Branchiostoma lanceolatum)
GTTCATTCACCAATAGGTCCTATAGCATGTACTATGTTATGTACGTGTGT
CTTTCTTGATTTATGATACAATAAAAACCCTCAATTTCTTGCCCCAACCA
TTTTTTAAGATATGTGCACTAGTCCTCAGATTTCAAACCCGCCCCTCTAC
CACCCCTCAGAATGGTACAGCCCTGCCCGAGTGGCACCTCATGGTAGTCA
TGTGAGTTCCGGGTTCACTCGCACTCAACATGGCGGCCGGTGGGGACGAT
CGTGTCCAATATTACAGGTACAAGGGGATTCCTCTCCCGAGTCACCTTGT
ACCTGAAGACATGGACGCCATTCAAGACTTCGCCGTTCGAGACGATGACG
TGTTTATTGTCACGTATCCCAAGTCAGGTGAGTTTCGTCTGAGCCAAAAC
GCCACTGCTGAGGAATCAGTGGCAATGGGTCACGACAAGTTCTATCGGCA
ACTCTTACATAACCCTGCTTTAACAATGCCATTGTGGTCTGTAATATTGT
GTAGTGTATAAGCTATAGCGGTAGATTGAACTGTTAATGAGCGCAACTGG
TGATGTAGTTGTTTAAGCATTTGCAACAAATCCACTATTTATTTATTTCA
TCATTTCTAACAGGAGTAACAAAACTCGCAAACAAATACCCTGATGTTTA
TTCTATTTATCTGTTTGGCTGTTCAGCACACACATCCTCTGTTGCCCAAC
TAGCCTGTTGCTATTTCAAAGGTGAAGGGCTAGCCCTGCTGACAAAGACA
AGACGTTACAATGGAATTTTTACATGGACAGTATAACGAGCTATAGCAAT
ATTCGAAGTACATCATTCGTAAACGCTACTGTATATAAATCCGTACATTA
AGGTTTCCTCCCTGGCTAAATTGGCTTTTTGACTTTCGATTGTTTTCTCA
CAAATGAAAAGGACTGATGTAGTACTGAATATTGATTGGCTGGTCATGAA
ATAATTCTAAATCTAATTTTTGGACCAAATTTTATTGCCTTAAAATGTTT
TTTTTCTAAGAGCAAATACAGCACTTTGGTACATAACGCTGCAATGAAAC
TATGTTTTCCATGTGCATAATGATCAAAGCTACAAACGTACGTTCGCACA
AATACATATCTATGTCGTGTCTAAAGCTATTAAAAATGATTTTCTATAAT
TAGGTAAAAACAGTTCTTTTTAATAACTACAGATGATAAGTAGATATCGA
TTTGTGCGAACGTACGTTTGTAGCTTTGATCATTATGCGCATGGAAAATA
TAGTTCTATTGCAGTGTTATGTACCAAACTGCTGTATTTTCTCTTAGAAA
AAATCATATTTAAATTTGATGACGTCATCCATATGGTAAAAAAAGCAGAT
TTAGAATTCTTTTACGACCAGCTGTCAATGTTCAGTACAACTACAGTTCA
TTCTTAATCTGCTAATGAGAACAATGAAAATTCAAAAAGCCAATTTAGTC
AGGGAGGAAACCTTAACCAGTTCATCAAATACTGCGCATATAGAGTAACG
GTGCTTCATTTGGTGTTTTCGACCGAGTGGTGTGGGCAGTGACCCGGGTA
TCGGAGATCACCCTCAAATAAACAGCTCGACGATTGTACACAGCTCTAGA
ACGCGACTATTCATTGGTGCAGAACGAATTTGAATTACTGTATAACCACA
GTCCGTCAGGAAATTTTCTGATTCATCATTTATGCAGGAACAGCCTGGCT
ACAGCGCATCGTTTCTCTGTTGCGTTTTGGCGGCGACGTGTCGAAAACTG
ACATGAAAGAACAAGACAAATTGGTGCCTTACTTTGAACAGAAGTGTGGA
GACAGCGCCACCTTTCGGGAACTACCGGAAGCTCCATCACCAAGACTGTT
AAAAAGTCATCTTAACTTCAGTCATGCTCCAGTACAACTTGCGCAGGGGA
AAGGAAAAGTAAGTCACAGCCATTCTGTGAGAGTCCATGAGTATATATGT
ATCTTTGTGTATGTGAGTATATCCGTGTGTAGTACATTTCTGTATGTATG
TGTGTGTGTGTGTGTGTGTGTTTGTGCGTGTGCATTTGCACATGTGTGAC
TGTGAAAGTGAGTGTGTGTGTCTCATGTGTGAGTACGGGTGCATACATTG
CATATATGTGTGCATGTGTGTGCGACCGCATGTGTGTTGTGGGTTAGTGT
ATATAACATGCATGTGTGCGCGTGTTTAATATAGCCTACGCACATGCGTG
CGTATGTATGCGTGTCCGCGCGTGTGTGTATGACTGTTTATATGTGTGAA
TGCACGTATGCGTTTGTATCTAACGTTTTAAGTCATACTCGTTTCTTTTT
ATTATAATAATATACAAATTTACGTCTTTTGCAATGTTGTGACATCATAA
CTTTTATTGCTATAATATACATACATACTGTAGGTCATCTACGTCGCCAG
GAACCCAAAAGATCTTGCGGTGTCCTACTATTACTTCCACTTCATGGTTA
CAACACTGAAGAACCCCACATCCTGGGAACAGTTCCTACAGGACTTCGTA
AACGGCGAAGGTAGGGGTGCTTACGACACTTCTTCACATCATGCTATGTT
TGCTAAGTAGGGTCATGTGACATAGCCGTAACCTGTCAATGCCTTCCGAC
ATCCTTTCTAATATTTTGACGTACATAGGCCTCTCGAGCTTTGCTTTAAA
GGCATACACTGGCGTATTTTTACGCGAACCATCATCATTGACACCGTTAG
GTAATTTGAGGGGGGATGAAATATAATTCGCTTTGTTTGATTATTCTAGG
TCATTAAAACATCTTAACTTGGACATTACTTTTACATTAAAACATTCCTT
GACTTCACCAGTGAGCAGGGGAGCATGGCACGACCACGTGCTGGGCTGGT
GGGAACAGAAAGACAGCCCAAACGTGTTATTCCTCAGGTACGAGGACCTA
CAAAAAGTAAGTCTATTATCCTCTCCTTTTGTCTATCTAGACATAGCGTT
ATCCCACTCAAAGCGTCTTTTTCTTTTGATCTATACTTGACTTATTCAAA
GTTAGATGCATTATGTTTGCTATCCATGATAACAATTTGTACATGTGGTT
TGGCAGAACACCCGGAAACAGGTGGGGAAAGTGTCGGAGTTCCTGCAGTG
GCCCGTGACCCCGGAAGTGATTGGCAAGGTCGTTGAGCAGAGCAAATTCC
AGAAAATGGCGACAAATCCAGCCACGAACAAGGTTGAAGGGAAGGAGGCC
AAAGCGGGGATATTTGACTCCTCGAAAGGAACTTTCTTTAGAAAAGGTAT
AGAACACGGTCCCTACATGTTGTATATTTCCACGCTGTCAAAATCTAATG
CAACAAAAGAAAATTATGAAATTAAAGTCATCATCGACATTGGAGGATGA
ATAAATACGTCAGTGGTTCTAACTGCACATGCGCAGCGAATTATAATGAG
GGTAATATGTCAAAAGTGAAGGCCCCTGACTTGTTAAGAGTTCTTGTCTC
CGCCGTGCTTTATATCTGTCCAGATTCCGTCGGTCGGTTCGAATAACAAC
GAAAGAACCGCCTAATATCATTTATATTCGATTTACGATTTATCATTTTT
TGCATTTGATTGGTATGTTTCGTTTCTTTATGTCTCTCTTAAATCTCAGC
AGTCATGTTCTTCAAAACAGCTAGAAAATACTTCTGCTCTTCTACAGGTA
CAGTTGGTGACTGGAAGTCTCACTTCAGTGACGAACAGAGCCAGTGGTTT
GACACGTTCTACCAGGAAAAACTGGGACCAACTGGACTTCAGTTCGACTT
TGAATGATAGAAATCACAAAGCATGTTACAGTGACTGCTAAATAAAACAC
GATGCCCGGAGCAATATCGTCTCATTTTAACTTTATCATCAGTCTGTATA
ATGTTTCATAATGATGTTCTGTCCTCTTCATCTTAAGAAGCGAAGAAGCA
GTGTGTCCCCTGTAGCTATATCTAAT

Coding sequence (CDS) from alignment at Sc0000245:343455..347380-

>transcript:BL97299_cuf7 ID=transcript:BL97299_cuf7|Name=transcript:BL97299_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=891bp|location=Sequence derived from alignment at Sc0000245:343455..347380- (Branchiostoma lanceolatum)
ATGGCGGCCGGTGGGGACGATCGTGTCCAATATTACAGGTACAAGGGGAT
TCCTCTCCCGAGTCACCTTGTACCTGAAGACATGGACGCCATTCAAGACT
TCGCCGTTCGAGACGATGACGTGTTTATTGTCACGTATCCCAAGTCAGGA
ACAGCCTGGCTACAGCGCATCGTTTCTCTGTTGCGTTTTGGCGGCGACGT
GTCGAAAACTGACATGAAAGAACAAGACAAATTGGTGCCTTACTTTGAAC
AGAAGTGTGGAGACAGCGCCACCTTTCGGGAACTACCGGAAGCTCCATCA
CCAAGACTGTTAAAAAGTCATCTTAACTTCAGTCATGCTCCAGTACAACT
TGCGCAGGGGAAAGGAAAAGTCATCTACGTCGCCAGGAACCCAAAAGATC
TTGCGGTGTCCTACTATTACTTCCACTTCATGGTTACAACACTGAAGAAC
CCCACATCCTGGGAACAGTTCCTACAGGACTTCGTAAACGGCGAAGTGAG
CAGGGGAGCATGGCACGACCACGTGCTGGGCTGGTGGGAACAGAAAGACA
GCCCAAACGTGTTATTCCTCAGGTACGAGGACCTACAAAAAAACACCCGG
AAACAGGTGGGGAAAGTGTCGGAGTTCCTGCAGTGGCCCGTGACCCCGGA
AGTGATTGGCAAGGTCGTTGAGCAGAGCAAATTCCAGAAAATGGCGACAA
ATCCAGCCACGAACAAGGTTGAAGGGAAGGAGGCCAAAGCGGGGATATTT
GACTCCTCGAAAGGAACTTTCTTTAGAAAAGGTACAGTTGGTGACTGGAA
GTCTCACTTCAGTGACGAACAGAGCCAGTGGTTTGACACGTTCTACCAGG
AAAAACTGGGACCAACTGGACTTCAGTTCGACTTTGAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97299gene:BL97299Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97299_cuf7transcript:BL97299_cuf7-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97299_cuf7-E1BL97299_cuf7-E1-1564476830-406860Branchiostoma lanceolatumexon
BL97299_cuf7-E2BL97299_cuf7-E2-1564476830-406857Branchiostoma lanceolatumexon
BL97299_cuf7-E3BL97299_cuf7-E3-1564476830-406855Branchiostoma lanceolatumexon
BL97299_cuf7-E4BL97299_cuf7-E4-1564476830-406853Branchiostoma lanceolatumexon
BL97299_cuf7-E5BL97299_cuf7-E5-1564476830-406851Branchiostoma lanceolatumexon
BL97299_cuf7-E6BL97299_cuf7-E6-1564476830-406849Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000245genomeSc0000245:343455..347380 -
Properties
Property NameValue
Transcript idBL97299_cuf7
Biotypeprotein_coding