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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97368_cuf3 >transcript:BL97368_cuf3-protein ID=transcript:BL97368_cuf3-protein|Name=transcript:BL97368_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=218bp
MVLVIAYLEIQFEDSMMAAGQLPPQLRQKLTSFAEFAFPAARAAREGREH
HQLKSIGNELVSNLPLQMALYFNVCYFPFWLVTAIVLLQLKFSSLDEFYK
FITVTVYVVMVVVEIVRLYLGYLGNLQEKIPELAGFWLLTIVLQFPLSFF
ILFNEATVILPLERAIHIVMTIFVSFEVVCGYFAIKVMSSHQVTKFHLRQ
FDDLQYLDDGQTRWTSDA Run BLAST on NCBI mRNA from alignment at Sc0000215:293789..301751- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97368_cuf3 ID=transcript:BL97368_cuf3|Name=transcript:BL97368_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=7963bp|location=Sequence derived from alignment at Sc0000215:293789..301751- (Branchiostoma lanceolatum)
GCCTTCCTTCTGAATGATTGACATCTGAGCTTGGAGGAGTCATTATGGTA
TTGGTGATAGCATACCTAGAAAGTAATCATTTTTATGGGACTGTAATAGA
GTGATTCGACATGATAGTGATAAGATGATGATGATATAGACAACCTTCAA
AATATATATGTGTACTACTATCAATATACTCAAGAAATACTGTAGAATAA
TGTTGTAAAACACTCAGCGTTTTGTGGATATTTGGCTATCTTTCAATCAT
ATGTCCTGAGTTATGCCGCCACTGTTTTTTTTAAATAGTTGTCAGAGTCT
TTTTCTTACTAAAACCAAGGAAAAAGAAAGCATCAAACTAGCAGACGACA
AGAAGACACTGTCGAATAAAAATGAATATTATCATTTCCACGCACTCTGG
ACATACAGCACTCCAATATCTGTCAGATATTTTTAAGAATAAACCTAAGA
TTAACTTTCCTGACCAAGATTATCTATAAGTTATTGAGAAGAGAAGGACC
CACTGTTGTTGTGCCATGTAAATACCAAGAGGGCTTCTTGGTTCCGCCAT
TTTTGCAGATAACGTCTTGGAGTGTACTATTAGCAGATGGAGGGGTGAAG
TGTACTATTCATAACTAAACCCAATTTGAGAACATAGACTCTATACCATT
AGTAAATTACATACTATATAGCTTCATAAATACTTCTATCATGTTGAATA
TCCAATCAATTCATAAATCCACAATCAGATGTTTAGTTTTTAACAGGGCC
CCTCCCGTATATCTATGAGATTGGCATTGTCCATATGAGAGGGCAACATA
ACGTAAAAAAGGCTGGAGTCATCTATTAAAATATTACCACACCGTAGAAA
TATTTGAGAGTTACTTTAAGTTACAATCAATTTTTATTATTAGTTACAAA
TTTTAATATTAGGTAAAACAAGATTTATCTATAACTTGTTAATCTTTTAC
CGTTTTACATTTCCTTGCAGTTCAATTCGAAGATTCCATGATGGCGGCCG
GACAGTTGCCACCACAGTTGCGACAAAAACTCACTTCTTTTGCCGAGTTC
GCCTTTCCTGCGGCACGGGCGGCTAGGGAAGGGCGAGAGCACCACCAGCT
TAAGTCCAGTAGGTGATCCAAATGAAGACTTTGGCCCTACATGGAAACAA
AATAATCATTTTCTGAAGTAAAGTTAGTTGGACGCTACCCGGAAGATGCG
CCTGTCAATGAAAATCTTTCATGGGGAAACATAACGGGAGGGTCACTGTC
CTATGTCCATATGCGAGTTCAGGCAAATGATTTGTGTAAATATCAAAACA
CCAAAATTTGCTGATGTGAGTCACAGTAGTGGCTTATGTGTACATTTTAA
AGTAACTATAATTATAAATTTCCTACGAATCACAACATCATCGCATATGA
ATTTTATGAGGGTCTGTTATACCTTTTTCCGTAAGGCATAGCGAGCTTTA
TTCATGTTGTTTGTTGTCCTGGATTCATCATTAAGCATTATTGATAAATC
TTCATATCAGAAAGTCGAACTCCAGCTAGCCCAAAAATCACAACTGATGT
GTGAGCGTCCAGTCTTGTGGGTGTGTTCGCAGCCTACCTACCAGACGCCC
GGCGAGTACGTGTTACAAAGGAACTTGTACCCAAAAACGTATACAAGAAC
AAAATAATGTACTGTTAGATTTTGCCGGTTCTCCTGAATTTGCCCTGATG
CCTGCGGTTGATTGATTGATTGGTTGTCGGTCCTCTTAAATTTTTTCACT
AAGCATTGCCAGGATTCCCTGTGAAGCTGGTGTATGTGTTATGCCAAAGG
ACAGTTATGTCGGCTATACACTAATACAGATACAGATGCAGCAAAATCTA
ACAAGGATAGCTTCTAAGGCTAACTGATATTTTGGTATTTTCTTCCCTTA
AGTTGGAAATGAGCTGGTCTCCAACCTGCCACTGCAGATGGCCCTGTACT
TCAACGTCTGCTACTTCCCCTTCTGGCTCGTCACTGCCATTGTGCTGCTG
CAACTAAAGGTAAACTCAAATTATCACGGAAGTTCATCTGTGTCGGTAGT
AATCATAGTATTAGTAACGTTACAATGCTAAGCTTTTTTTCCAACACTAC
AGCCAAATTTTCAAAGACCACAGTGCCTTCTTCACGATCAATAATGACCA
GTCACTTCCGAACATAAACTCGCGAGAGTTACAGACACGCGACCTTATTG
ACATCATGTCAATAAGGTCGCCTGTCTGTAACTCTCGCGAGTTCAATGAC
ATGTGCCTTTACAGATACGTGACATCAGCAATTGTAAAGGCACGTGTTAT
TAAGGTGTTGGAAGAAAGTTTAGCATTGTACTATAAAGGTAAACAGTTAG
TGATTATCAGTACAGTATTTCACGAGTGTACAGCATAAGACAAGATTTAG
TGATAAGGACTATATAAGCTTAAGCTTTAGAATGTTTTTGTATGAATTTT
TACTTTTGAATTTACAAATATATACCCCAATATCAATTAACTACCATGTT
GCTGCATTGTTGTGTCACTACCTACCATTTTCTATGTTTTATTCTGGGAC
AGTGTTAATCTTGCAAGTTACTGCTTAGAATAAGATTATCTCCAATCTTC
CACTATCATATTATACAAAATCAAAAATCATCATATCTAATTCTAAAAGA
CTCTACTGCATACATGTATGCCATTAAGTCTGTTCTCAGTCTTAGTGATG
TTAGCTCCATTACTTAGTATGAATATTTTCCTCCAGTTTTCATCATTGGA
TGAGTTCTACAAGTTCATCACAGTGACGGTGTATGTGGTGATGGTGGTTG
TGGAGATTGTAAGGCTGTACTTAGGCTATCTGGGAAACCTGCAAGAAAAG
GTAGGCCTTCTTTCTAAATGTACATGCAGGTAGTCTCCACCAGACCTTCT
TTGTGGGATGAAAATAATGGCAGAAATTGTCCACGATTTTGCCAGAGGTG
TTGGCAAGATATGGAGTACGCATGCCTATAGCCAGCCAACTCACAGTGAG
TTGGCTGGCTAAAGGCGTGTGTACTCCATAGCTTGCCAATGACACATCTT
TTCCAGACAGTGTTTATTCCAACTCCAAGAATATGTGTTACCGGTAGTCT
GCAAATTAAAGCCAGCTGTGTAGAGACTGCTGACGTCGTTTACACAGATT
GTCAAGTGAGACTGAGGAGTCAGTGAAGTCTGAGAGAAACTGTGTCAAAT
GTGAAGAACTCACTACCTCTGCAATCTAACAGTATGAGAATTGGTCAATT
ACTAGTACCCTGGTTGGGATTTTACCTCCATGAAAAATGGATAGATATAT
AAATTGTTTTGGTTCTGTCTGTGTATCTGTCTGTGTTTCCAGATATTTTT
GGTCAGCATAACTCAAGAAACTTTGGATGGATACTAGTAGTGATGATACG
TGTATTTGGCATGTGGGTAGATGTTGGCAAGACGAAGGTCAAGGTTGATT
TTGGGCCCCTGGTGTGTGACCTTGGTACTGCAGCAGAACCTCTGGTTTTT
GTATCTTTAGACCTAGGTATGCTATGGTCTTGATTTTGATGGCAGATTAC
CAGACACCAATTATGCAGATAAGGGCCTAATTTGCATATTTTTTGAAAAA
GTGGTAAATGATATGCAATTCATACTTGTGGCATATGTTAAGCCCCCCTC
TCACTGGACCCGCGGCACGCTGGTGGTGTCGCTGCGTCCTAAGCTAGATT
TGTGTTACCCTTGACTTTATAATGGGAATATCATTCAAAATGTACAAGTA
TGACCAAAAAGACAACAAAACACACAAAGCTTAAAAAGATTCGTTTTTTG
TCAATGACATTCGTTGAGTGCTTTGTCAATTAGATCGGCAGCAGCGACGA
GGCCAGCGTGCCACGGGTCCAGTGAGGGGGGGCTTAACTAAAAGGTGTAC
ATATTACTCACAACTTTCATAGATTATGCAACTGTGGAAGATTATACAAA
TGTGGAAGTCGTTTCCTAAATTAAACTATTTCATGCATGTCAGACAAGTT
GAAGGCTGTGATGTCTAGACTCAACAGGATATTATTAGTGATACATTTGC
TTCTGTCTGAAATTCAAAATCATCAAAACATGTTTTCATGCTGACTACTC
TTATCAACTGTCTGTAAGGTTTATCTACCTTGGCAAACATAGAGTAAAAC
ATCAGTGCATTTTGGATGTTTGCTCTTTGTCTGTGTTTTTCATTTATAGC
CAAGCATGATGAACATGATCTTTTGTTTAGTCTCTGCCTGAGATTATTTT
CAAATGTTTAGGTTGAACATGACATCCATTACTCAAAGTGTTATGCCGGG
TTCCACGTCAGAAAAAGTAATTCTTCTTATCCCTTTGTGTTTGCCATGTC
CATGGCAACATGGATCCAAACAGTTTTTGAGTTTTTGGCTTGTCTTCATA
TACATGTACGTGTCATTTCATCTGTGTTTATTTGTATTTGGCAAAATGTG
GCATAGCACGTGTGTTTTGTGTACTCACTGTTCCAAAAGTACCTGCTGAT
CTGCAAATCTAGCTGTGTAGAGACTGCTGACGGTTACACAGACTGTCAAG
TGAGGCTGATGAATAAGTGAAGTCTGCGAGAAATGTGAAGAACTCACTGA
CTCTGGAGGACAAGTGTGTGGCATGATTAAGAACAATAAAACTAATAGAA
TTCACTGAATATTGAGAATAGATCCTTTCACCAAATGGCTCATAAGTGAT
GAACGATAATCATAAAGCCGATACCGCAGTGAAAATGCTGTCCCAGACAT
GGCTGATGGATCCAAAATTGTTGTTTATACAACTGTATATTAAAAAGAAT
CCCATTCTTCAATGACATACCATTACTACCAACATGATTAAGCTGTTCAC
AGATAACTTTTATGAGTAGTGCTATGTGCCTAAGCTCAGGTTCAGGTTGA
GGTCTGGATTCAGGTCCAGAGGTTCAGGTTCAGATTTATATGAGTGCTAA
AAATCTTATTTTTTCAGTTACATCTATAATTGCATTGTGGCGTAATTTTT
ACTTCCAATTTGAAAACTACATATGCAAAATTATATACAGTCAGTATAAA
AGGCATCCATCTAGCATTTTATGTGGCTCAAAAATTGAATCAGAAAACTC
CAATTTCTAGTCCTTCCTACACATAGTAAGTTTCAATAACACTATACATA
TCGACATTAAAGGAGCAAAGATACGATGTCGTTGTGTGGTGAGAACTGAT
AGAAAATCCAGACTGTCCGTCACAATTAGCGGCTCGACCAATGAGAGAGT
GACTGCACGTCCGTCAAATATTTGCATTCTTATGTTTTAATTTTGCATTT
CTACGTTTTGACAGGGGGGGGCGGCGCTGTTTTTCGTTTGTTTTTAGAAA
CCATTTGTTTGTTGTCTAACAGATTCCAGAGCTGGCTGGGTTTTGGCTGC
TCACCATTGTCCTCCAGTTTCCTCTCAGCTTCTTCATACTCTTCAACGAG
GCCACCGTGATCCTACCGTTGGAACGGGCCATCCACATCGTCATGACGAT
CTTTGTTTCCTTCGAGGTAGTCTGTGGCTACTTCGCCATCAAAGTGATGA
GCAGTCACCAAGTTACCAAATTCCATCTCAGGCAGTTTGATGACTTACAG
TATTTGGATGATGGACAGACAAGATGGACCTCTGACGCTTGAGATCAATA
GATGTACATACGCATGTTTCCCTCTTAGAGTGATGTCTTGTTGCTTTCCT
AGGTTAGCTACTGTTGCTAATAAACATCTTCGATATGTTGATGAAGGTTA
GACATCCAGGCAATAAGATATGTCAAAAATAGTTACTCAAGCAACTGGAT
AAAATTTTGAACCTTCTGAAATTGTCTTCACTTCATTAACATATCTATTC
AGAGTTTCGGTATAAAACCTAGTTCTGCCAGATCTTTCCATAGTCACTGA
CGCAAGATAGCGAATGCTGTCTGAAACGTCTGACTGTTTCAAGATTTTAT
CCAGTTGCTTGAGTAACTATTTTTGGCGTATCTTTGATATGGTAGGACTA
AACCTCCATGGAGTACAAGAGCTTTTTTTGTAAATATTGCCAGATAAAAA
GAATTCTATCTGTTGTATAGCTCCCCTTTCTTATGTGACTATTGTTGTAT
CTTAGTCTTACATGTCTGGGATACACGTATTCTGTTTCCACTTTGTATAT
ACAGGTACATGACTGTGTAATTTGATCTTGTCCTTGTAAGGCATTGAATT
TAAAGAATGAAATGACTTGACAGAATAATTTGGTATAATGAGTCTGAGTG
AATATTTTGTGTTTGTCCTGTTTGTATAGCATGGCCAAAACACTTGTACT
TTTGAAAGAACCAGCTGTGTAAAATGGACTTATTGGTTTGAACTACACAA
TCAGGGTGTGCCCACTCTTGTAGATAAGAGTCATGTAACGAGTCAAGTGG
TCCCGGGTTCGAATCCTGTCATGTCACCGATCTTGTGCCCTTGGGAAAGG
CACTTTGCAGGACTTTCCTCACTTCACTCAGGAGTGAATGGGCACCTGAC
TTTGGTTGGGGAAGGTCATATTGAGGTCACCTGGTGGCACCGAATGGCAG
CCACCCAGACCCTTGCGACGGTTCCACAAATTGCAAGTGTGGAGCAAATA
TGTATCTGTTGCCCATGTGTATTATGTGATTGTAAACCCTGCACCAATTC
AGCACTAAAAAGGCTGCCATTGCACAGGTAATTTCTGACCAATAAAAACC
ATTATTATTAAGTGTGCTCCCCTCAAACATTAGCCTTTTTTATTTTCAGT
TATAGCCTTCTGCTAATCATTTTAGCAGAATTTCTCTATCAAATGGTTCC
TCTTATTGAATTTTTTACAGATTTGTTAAGTCATAGTAAATCCCAACATT
CTATGATTATTAATATGAAGCCATGTAAATCAAATGTAAATGTTTGTTTG
TTTTGCACAAACGGTAAACCACCATCAGGCATGATGGACCAGTTTTGTAC
AGTAATTATAAGCTCAGTAAGACTGGACTGTAAGGTTTGATCCACTCAAA
CCGGGATGGACTCCTACTCTTTTCGATATGTGTGATGGGATCTTAAACGT
GATTGAGGTGTGGCTCTCCTCAAACACGGGGCCTCCAGCTTTTCATCCCC
AACCTAAACTCAGGGCTCATTTTACTTGAGTCAATTGAAGAAATATGATT
TAAATGCCTTTCCTAAGAGCACAACATTGGGACCTACTGAGGATTTGATC
CCAGAACCTTTAGATTCTAAGTCAACAACAAGACCACCTTGCATTGTTGT
TATTGACCAGTAACTGTTAATCTTTTATGCCTATTTCTCTTGTGTACTGG
ACATTTGAAGGCAGACCTGGTTTTCTATTTCATTTTCTGTGATCATAAGT
TTGTCCATTTAAAAGTTATTGTGCCTGGTCATCATCATTCCTTGACTTTT
GTATTGTGGCTGACTGAAAGACACTTTCAACTTTTACCATTTTTGCATTT
ATTGTGTGAGAATATGTGACAAAGTTTTATTACGTTGGGTTCTTATGGTT
CTTGAGGAAGTTTGGTCGCATTATAATTATGTAGTCTAGCTGAAATGAGA
GGGAAAGTTTCATCGGCACTATCACTTCGCTATTTCCTGTCACGACAGCT
TGGGTAGATAATGTATGCTAACTTCAGACACTTGAAAAAAAGGCAAGAAG
ACTTCAAGAGTTTGATACATCATGGATATGTATTCTTCAACTAACGAACA
TTTCAAGCAGCAGTGTATTTGTGACAACTCAACTTAAGCAACAAAATCAT
AACATTTACGATGCACTGTGCCCGACAGAAGTTTGTCCAGATGTTGCACG
TTACATTGTCTCTCTTTCAAATTATAGGCAAGTTACTACAGCTGTCTTCA
CGGCAACATGTGCGTTTGTACAAGCAATGCTTGATTAAGTGGACCTTTCA
GTCCACCAGTCAATAGAATGAAAAAAAGAGGATCTGAAAAGTACAAACTG
TATTAAATGGACG Coding sequence (CDS) from alignment at Sc0000215:293789..301751- >transcript:BL97368_cuf3 ID=transcript:BL97368_cuf3|Name=transcript:BL97368_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=657bp|location=Sequence derived from alignment at Sc0000215:293789..301751- (Branchiostoma lanceolatum)
ATGGTATTGGTGATAGCATACCTAGAAATTCAATTCGAAGATTCCATGAT
GGCGGCCGGACAGTTGCCACCACAGTTGCGACAAAAACTCACTTCTTTTG
CCGAGTTCGCCTTTCCTGCGGCACGGGCGGCTAGGGAAGGGCGAGAGCAC
CACCAGCTTAAGTCCATTGGAAATGAGCTGGTCTCCAACCTGCCACTGCA
GATGGCCCTGTACTTCAACGTCTGCTACTTCCCCTTCTGGCTCGTCACTG
CCATTGTGCTGCTGCAACTAAAGTTTTCATCATTGGATGAGTTCTACAAG
TTCATCACAGTGACGGTGTATGTGGTGATGGTGGTTGTGGAGATTGTAAG
GCTGTACTTAGGCTATCTGGGAAACCTGCAAGAAAAGATTCCAGAGCTGG
CTGGGTTTTGGCTGCTCACCATTGTCCTCCAGTTTCCTCTCAGCTTCTTC
ATACTCTTCAACGAGGCCACCGTGATCCTACCGTTGGAACGGGCCATCCA
CATCGTCATGACGATCTTTGTTTCCTTCGAGGTAGTCTGTGGCTACTTCG
CCATCAAAGTGATGAGCAGTCACCAAGTTACCAAATTCCATCTCAGGCAG
TTTGATGACTTACAGTATTTGGATGATGGACAGACAAGATGGACCTCTGA
CGCTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000215 | genome | Sc0000215:293789..301751 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97368_cuf3 |
| Biotype | protein_coding |
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