|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97392_cuf4 >transcript:BL97392_cuf4-protein ID=transcript:BL97392_cuf4-protein|Name=transcript:BL97392_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=446bp
MATDADYLPECWKDDERMNFLFSAFPDNRDLNPHHWDSKLQFWADLVTHS
SRSVDEVCLDCSALPQRFKRGGKTPLGLPVVLSEMIRQGKIQKLSEFQSG
VDAGWVSWGFDLVVKRPLRWTFGTLTGRNHGNPEGIYLLVDLVKEKAEAV
MMTHETSVEFESTDHVVEYRCLLEQCRHCCKDQDTLDLALLHLRKHRKVC
IFQSDQGEKLVKFASSAHKTVSPVTDVEVGILRLKKTEASLMQQVEKLQS
DSDRTDAKAYLQKGLKNAAKNALRRKQHIQKIMEKREGSLETVHGLLRRI
QDAESDKMVIDAYRAGVSAFKQTVDKAGLTPEAVDETMLDVQQVIETSNE
ISDSIAGGQADMSGLDLDMSGLEEELAGLLAEETPSVAPALTPSEVELKL
PSVPTSPVGGAIAAGGTSPVTGGTTPVSPHQAAGRSDTARRLLLTE Run BLAST on NCBI mRNA from alignment at Sc0000073:520887..526684+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97392_cuf4 ID=transcript:BL97392_cuf4|Name=transcript:BL97392_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=5798bp|location=Sequence derived from alignment at Sc0000073:520887..526684+ (Branchiostoma lanceolatum)
AACAAGTTTATCATCTCGCGATCTACGAGAACTCGTATCAAAAGGTCAAA
GTTCAATACAAAATGGCGGAAAGTTGAACTTTGACAACCGAAACTTCAAA
TTCCGGCTAAATTTCTCCGCTTTACAGGACCTTAACACGTCCTAACGATG
GCAACAGATGCTGACTATCTGCCGGAATGTTGGAAGGATGACGAGCGGAT
GAATTTTCTCTTCTCTGCGTTCCCAGACAATCGGGACTTGAACCCGCATC
ACTGGGACAGCAAACTGCAGTTCTGGGCTGACTTGGTTACTCACAGCTCA
AGAAGTGTGGATGAAGTATGTCTGGACTGTTCTGCCTTACCTCAGAGATT
TAAGAGGGGTGGAAAGACACCACTTGGGTTACCGGTGGTGTTGAGTGAGA
TGATCAGGTAGGATGTATATAGATGTAGTAATTATAATGTTTGGTTATGA
AAGCGGCCACGATCGAGAGGAGATTAAAAAAAAAAAAACATTTGACAGGA
TGCTCCTGCAAAATTAGGTCAATAAGAATATTTCTTTGCACTGTTGGCAG
GATGTTCATATTAATAGTTTACAGAATATTTCTGACAATATGAATTTGGT
TTGTTTTATTTGACAGGATGTTCCAGTCAATAACTAATGTTACAGTGTAT
TAAGAATTTTGTTTGTACTATAATGACAGGCTGTTTCAGTCAATAAGAAT
TTTGTTTGCATTATTGACAGGATGTTTCTGTCAATAGGAATTTTGTTTCT
GTAGATAAGAATGTTGCTTGTATGTATTATTGACAGAATGTTCCCATCAA
CAAGAATATTTTGCACCATTGACAGTACTAACGTTAGTACATGTATACCA
AAATAGCTGTTTCTCAGAATGTTGTTCAATTTCTATAATGTCCTCATTCA
ACTCTTTAATCATTAAACAACTAATCCAGTCAAGCACACGGTTCTTATAC
ATTCTCTTCTTGATGACTTTTCTCCTTCATTCTAATGGATGAAAAGCTGA
TATTTGTAACATGCATGCATATATACATGTTATCATCTTTTTTCTTCAGA
CAAGGAAAGATTCAGAAGCTGTCAGAGTTCCAGTCGGGGGTGGATGCAGG
TTGGGTGTCGTGGGGTTTTGATCTCGTGGTGAAACGGCCGCTGCGCTGGA
CGTTTGGTACACTTACCGGCCGTAACCATGGCAACCCTGAGGGCATCTAC
CTCCTTGTTGATCTGGTCAAAGTATGTCTGTCAACACTCTTTACAATCAT
TGAATACATGTTCTTTCTGTAGTTCAATGATATGATTCAATCAATGTTAT
GGAAAGGACTGTTGTCTTTTTCTCCTCTGGCCCCTAGTGATGATGTATAC
TTTGTACACAATGTAGGAGAAGGCAGAAGCTGTTATGATGACTCATGAGA
CATCGGTGGAGTTTGAGTCTACAGACCATGTAGTGGAGTACAGGTGCCTG
CTTGAGCAGTGCAGACACTGCTGTAAGGACCAGGACACCCTGGACCTGGC
CCTGCTGCACCTCAGGAAGCACAGGAAGGTCTGCATCTTCCAGTCAGACC
AGGGGGAGAAGGTCAGATCTTTCGGTCAATATATGACATATTACTCAAGT
CTCTATTCTGCAATAGTTTGCCTTGATAAAGGATGTCTCATATCTGATAT
TACAGTTACAGTTGGTTAGAAATGTAGTAACTTATAGCAACATTTTTAGT
CCATTTGATATGACGACAAGCTTATTAAGCAGACTCTACATTTAATCAGC
TTATGAAATAGTTTCTGCTAGCCTATTCTAATTTGTAATATACATCCTAA
CTTTTGGATATTGTTCTGATGACTATGCCTATGTGAATTTCAATTTAAAA
TGGACGGAATTGCCTTTTTGTAATATGTTGAATGTGTTTTGTACCCAGCT
GGTGAAGTTTGCATCTTCAGCACACAAAACCGTCTCACCAGTAACAGATG
TGGAAGTTGGTATCTTAAGGTAATTATGAGGTGTACATCTATAGTATCTA
TATCATTGTCTTAAGTGCTTTGAATTCCATGTACTTTGAGATAATTTGAG
CTACTGACTGTATAGTTTTTCCATTCTCATGCTCACAATTTTGAAATATC
TATTTTTCAGATTAAAGAAAACAGAGGCTTCATTGATGCAGCAAGTGGAA
AAGTTACAATCAGACAGTGACAGGTATTACAAAAGCTTTTCATTTGTAAC
TGTACACTGTAACTGCAAATAGGTAAAACAATTTCAAGAGTTATGTCTTT
TTTTACATCTTGAAGTTCATTAGTACAAAATTAATTCATTTGGGATTTTT
CCACCCATGTTGTTCAGGTGCAGGACAGATGCAAAAGCTTACCTCCAGAA
AGGCCTGAAAAATGCAGTAAGTAATAAAGACTGCTGTTCATGGCAACTCA
CAGTCTCTATGGTGCCATCTGTAGTCTACAGAGCACTCAAAGATAATATA
GGCCAGATAAAATGCCCAATTAAGAAGACTTTATGATTTGTTTATCTTTT
ATCAATGTTGATTGCCTGTAACATACATCTTCCAGCTGTTTACACTTACA
TCTGGTGGCTGTTTATGTAAAGTGGAGATGATCTGCTTCTTTTCTCTTCA
ACCAATCTTTTTATTTCTGCTTACGGAGGTTCAATCATTGCTGTAATGTT
ATTTTGACAAAGCCAGATTACAAATGCTATCATTATCAACATACTAGGAG
TTAGAGTCAATTCCATGTCACTGAGAGGGTTTTCAGATGATATTGCTAAT
AAGTTTGAACAATTTTAGAGAAAAGACTATTTCAGTCAAAATAATTCCAG
ACCGTTCAAACAATTATAAATGAAAGTTTGAACATGTTTGAACTCATCTA
TATATTTTGGAAATATTATGAAAGTATTTGCACAAATATCTCTTTATTTA
GAACAGTTTTCAAACAACTGTGTGATTGTTCTACTGTTGGAACATGTTCC
AACATTTTGCATCATTCTCAAAATGGTAGATTTGGGTTATTGCCCCCATA
AAAGTAGGTGCTAATCACGCTCTATTGTCTGCCTCTGTATATTTTTAGAT
TTCACGTCTGGACACTGGCAACTCTTTTGTCTTTAGGTGTCTATGCATGG
CACCTAGGCCTAATCCCCTATACTTTGAAAGGGATGTGTGAATTGCCTTG
TTCCCAGCCCACTGACCCAGTTATATCATATTTGTAGAATGTTGGAACAT
GTTCAAACAAATGATCAATCTCTGTTGCAACAGTTTAGAAACTAATACAA
ATAATGTGTTCAATGTTGGAAATTTGTTTAACCTGTTGGAACACAGCAGA
AAATATTTAGCACATCAAATAAATGTTGGAAATTGTTCTTGACAGTTACT
TATCTCACATAGATTGTTACAAAGGTTTTGTAAATGTTAGAACAAAAGGC
AACAAACACCCTCTTGGTAATGTGGAATTGACTCTACCTGCAGCTTTTAG
AAAAATTAATGTTATTATTTCATGGTTTTACCTTTCTTCCTGTCCTTTCT
TACCCTCATCTTCCCAAGGCAAAGAATGCCTTAAGAAGGAAGCAGCACAT
CCAGAAGATCATGGAGAAGAGGGAAGGTTCCTTGGAAACAGTCCATGGGC
TCCTAAGGAGGATACAAGATGCTGAGTCAGACAAGATGGTGAGGGTGGAA
TCTGGATTACTAGTAATTTGGAAATGTGCAAGCAGTCACAATCTGAGCAT
AGTCATTTCCAATTTTGGCATATCTTACACACAATTATGTTGAAGTGTAC
AATTGTGATTAGTGAGAGCTTTTCTTTTCTGTCTTGCCACAGGTGATAGA
TGCCTACAGGGCGGGAGTGTCAGCATTCAAACAGACGGTGGACAAAGCAG
GGCTGACACCAGAGGCAGTGGATGAAACCATGCTGGATGTACAACAGGTA
GGGAAGAACAGTACAGAGATCAACTTTTCGTAATACATGTATATAGAATT
CAATTATGTAGTCGTCAGTATTTTAGTTACCAATGCTACAGTGTACGTGT
CATGTGGGTCTTCTGACCATTTTCTTTCCAGAAAATTGTTGTGCTAAAGG
TAAAATAGTACACATTAAATCCATACATAGATCTTCCTTGTTAGATGTTC
AAACTGTTTCTCTGTGTTTCTTGCAGGTTATAGAGACAAGCAATGAAATC
TCTGACAGCATAGCTGGTGGCCAAGCCGACATGTCAGGGCTCGACCTGGA
CATGAGTGGTCTGGAGGAGGAACTAGCAGGTCTTCTTGCAGAAGAAACAC
CATCAGTGGCACCAGCACTGACACCTAGTAAGAACCAACCCTTCATTCAG
GGGACCCTGTCTAAACCAGCTGCACTGACCTCCCAGCCACTTACCGAGGA
AACAACATCAGTACCAGCTGTCCCCACCCCTAAGAAACACCAGCTACCTG
CTTGTGGGTTGGGGGTTTCTCCTGGTCCACTTAATCATTACCCCAGCCCC
CACCCTGGCATGCCATCTCTGGGAACACAGCCTTCCCCGGTACACTTCAC
TCCCAGTACTGCAGCAGATGAGGACTTGGAAAGGGAACTGGAAAAGCTTA
CTCTGGGGGAACCAAGTAAGCCTGTCCCCATAGTTGTCCTTATAATACCC
AAAGTTTTTACCTCTGAATTATACTATTATTTTGTCTACCAAGTTGTTGG
TTTGTATGATGCTTTGTTGACAGAGTAATTCACAGAGTTTTTAATGAATT
TTGTGGGTAGATATTGGCCTGTGAAACAAGTACAAGTAGTTAATTTCCTT
GACAGATCTGGATCTACAATTTATGGATTACACATATTTGCCATTCCTAG
GTTTGACCAATTTCAAAAGTTTTAGTGTCAGTGAGTGGGGAATTGGGTTG
TCGTGACTTGTAATCTCCCTGTGCTGTCATTGTGCATATGTTTCAATTTC
ATCAGACATAATTTTTTTGTGTTTTCCAGGTGAGGTGGAACTTAAGCTGC
CCTCAGTACCTACATCACCTGTGGGTGGAGCTATAGCTGCAGGTGGGACA
TCACCTGTAACAGGTGGGACCACACCTGTTAGCCCACACCAGGCAGCAGG
AAGGTCGGATACAGCCAGGAGACTACTGTTGACAGAGTAGTGAAAAAATG
TCATTGTCAAAGACACATTCTCAGTATCATCTACAGTATTATCAGAGCAA
AATCTGTCTCATTGCAATCAATGTATTACACAATTGGAGACTGGTTTTGA
CATTATCTACGGAATACCTTTAGTTCTTTGATATGGCTAAAGTCATGGTC
ACACTATTCACATGAGCAACAAAGTTGCCTGTAGCATGCTACATGTACGT
GTTATTACTCATCCTCACATAACTTTCTTTTCCATTGTTCACGTTTGTTA
AGTTAGAAGTAACATGACTGACACGCTTTACTTTGTGAGTAGCTTGCCTG
GAAAGGTCCTGCTTTGTTGTATTGTTGTTAAACCCACATTCTGAATGTGA
GAAATCTTAATTTAAATTTTGTAACTGTAAGGAAAACTACTTTTAGATAT
ATCTCATTTATTCACAGCATGACAGAAATCATTATTATTGTAAAATATCA
GTCTTCAGTAAATATATGTTCCTTAAAACGCTTATAACCTTGTTACCTTG
CAATTGAAATATTGTCTTTTTAACAGGAATAAATGGCAATCTGAGAGATT
TAGGTAAAACAACAGTCTAATCAAGAGTGTTTTTCTGTAAAAGAACAGAT
TAGTTTTGACTATGAAAAAAAGGTGTTTTATCAATGGGGAGATCTTACTC
AGTTGTCCCTGTGTATTTCTGTGAATAAAACATGTAATCCACTGCAAT Coding sequence (CDS) from alignment at Sc0000073:520887..526684+ >transcript:BL97392_cuf4 ID=transcript:BL97392_cuf4|Name=transcript:BL97392_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=1341bp|location=Sequence derived from alignment at Sc0000073:520887..526684+ (Branchiostoma lanceolatum)
ATGGCAACAGATGCTGACTATCTGCCGGAATGTTGGAAGGATGACGAGCG
GATGAATTTTCTCTTCTCTGCGTTCCCAGACAATCGGGACTTGAACCCGC
ATCACTGGGACAGCAAACTGCAGTTCTGGGCTGACTTGGTTACTCACAGC
TCAAGAAGTGTGGATGAAGTATGTCTGGACTGTTCTGCCTTACCTCAGAG
ATTTAAGAGGGGTGGAAAGACACCACTTGGGTTACCGGTGGTGTTGAGTG
AGATGATCAGACAAGGAAAGATTCAGAAGCTGTCAGAGTTCCAGTCGGGG
GTGGATGCAGGTTGGGTGTCGTGGGGTTTTGATCTCGTGGTGAAACGGCC
GCTGCGCTGGACGTTTGGTACACTTACCGGCCGTAACCATGGCAACCCTG
AGGGCATCTACCTCCTTGTTGATCTGGTCAAAGAGAAGGCAGAAGCTGTT
ATGATGACTCATGAGACATCGGTGGAGTTTGAGTCTACAGACCATGTAGT
GGAGTACAGGTGCCTGCTTGAGCAGTGCAGACACTGCTGTAAGGACCAGG
ACACCCTGGACCTGGCCCTGCTGCACCTCAGGAAGCACAGGAAGGTCTGC
ATCTTCCAGTCAGACCAGGGGGAGAAGCTGGTGAAGTTTGCATCTTCAGC
ACACAAAACCGTCTCACCAGTAACAGATGTGGAAGTTGGTATCTTAAGAT
TAAAGAAAACAGAGGCTTCATTGATGCAGCAAGTGGAAAAGTTACAATCA
GACAGTGACAGGACAGATGCAAAAGCTTACCTCCAGAAAGGCCTGAAAAA
TGCAGCAAAGAATGCCTTAAGAAGGAAGCAGCACATCCAGAAGATCATGG
AGAAGAGGGAAGGTTCCTTGGAAACAGTCCATGGGCTCCTAAGGAGGATA
CAAGATGCTGAGTCAGACAAGATGGTGATAGATGCCTACAGGGCGGGAGT
GTCAGCATTCAAACAGACGGTGGACAAAGCAGGGCTGACACCAGAGGCAG
TGGATGAAACCATGCTGGATGTACAACAGGTTATAGAGACAAGCAATGAA
ATCTCTGACAGCATAGCTGGTGGCCAAGCCGACATGTCAGGGCTCGACCT
GGACATGAGTGGTCTGGAGGAGGAACTAGCAGGTCTTCTTGCAGAAGAAA
CACCATCAGTGGCACCAGCACTGACACCTAGTGAGGTGGAACTTAAGCTG
CCCTCAGTACCTACATCACCTGTGGGTGGAGCTATAGCTGCAGGTGGGAC
ATCACCTGTAACAGGTGGGACCACACCTGTTAGCCCACACCAGGCAGCAG
GAAGGTCGGATACAGCCAGGAGACTACTGTTGACAGAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000073 | genome | Sc0000073:520887..526684 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97392_cuf4 |
| Biotype | protein_coding |
|
