transcript:BL97409_cuf13 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97409_cuf13
Unique Nametranscript:BL97409_cuf13
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97409_cuf13

>transcript:BL97409_cuf13-protein ID=transcript:BL97409_cuf13-protein|Name=transcript:BL97409_cuf13|organism=Branchiostoma lanceolatum|type=polypeptide|length=303bp
KMALSMIKTYLVGLQATISQLLQGHRCLKDQPRQDGKVAIVTGGRSQDEA
NIAIETIKQSCPEAKVEFIRLDLASMKSIHEFVEKFKSRQLPLHLLINNA
GVMLTPYSLTEDGFETHFGINHLGHFLLTNLLLDILRSSGKPDHWSRILF
VSSVVHFIGDIDFPDLNSSKHYSPHASYAQSKLAIILTTNELQRRLLADL
SHVTANALHPGVVNSDLYQHVMWPLRVVQRMMGWIGLTKTPEQGADTILY
AAMSPDLEGIGGRYLDNCQEVPSSDQSYDKDLQKRLWEESCRLVHLENLS
LNA
Run BLAST on NCBI

mRNA from alignment at Sc0000018:2260423..2264549+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97409_cuf13 ID=transcript:BL97409_cuf13|Name=transcript:BL97409_cuf13|organism=Branchiostoma lanceolatum|type=mRNA|length=4127bp|location=Sequence derived from alignment at Sc0000018:2260423..2264549+ (Branchiostoma lanceolatum)
AAGATGGCGCTCTCCATGATCAAAACGTATCTTGTTGGACTTCAAGCGAC
GATTTCTCAGCTATTGCAGGGCCACCGATGTCTGAAAGGTTATGATTTTA
TCGTCTTATAGTATAGAGAATGGTATGAATGCTTGCTGCTGGCATGGCGT
TTGTATGAAACGTGTAATTCGGGAAGTATTGTGAAGCAAGTGGGAGGGGG
GCGAAACCATGCCTGGTCTGTTGGCATATACATGACTCTTATTAACATCC
TGACAGTGGATATTATGAGACTCTCTGGAAGAATGGACGGAATAAATCCG
CACTGTGTCAAAAAATGCTTTCTTAGAATTTCAAAATTCTTCAGGCCGAT
TAAGAGAATCCTCAGAATATGTCATAATTTGACCTAAGCTTGCAAGTAAG
TAAGTGCACTTCTGGGTTGCTAGAAATTACTGATCATCTCTTCAAACCAT
GACGACATGAAACTCAAGTGAATATACTGTTTTTATTTGTATCTACTCCC
GCAGATTTATGCACTCACTGTTAAATCTTGAATTATTTGAAAGAAATGTT
GCAACAAGCTTACCAGCACCAGTATTGTTTGAAAGTAAAATGAATTTCTT
TTATTTCAGATCAACCAAGACAAGATGGGAAGGTTGCCATAGTAACAGGT
GGAGCAAAGGGCATAGGATTGGAAGTGACGAAAGGACTGGCACAGCTTGG
TGTGCGTGTCTTTATAGGTACTAGTAATGATCAGTGCTATAATTGAGTTA
AACTTTTATCATTTTAAGTTTTAAAGTTTAAGTTTTGCATGATGATTTTG
GTATGCAGTCTGCCATTCACAATTCATGACAATATCACCCTCATTAAATC
AGGACCCCTATCGCTCCACGTTAGCTTGCTCATGTAGGGGCCCTGATCTT
CAGCGCCGGTAGACATGGTTCTGGCGACGTCACCACCAAAACAGCTTCAG
CCAACCAGAGGGTTTACTAAACCTCACAAATTAACCGCCAAATAAGGATA
GCTCATTATTATCCATGACCAACTGTCAGTAACAGAACCATGTCTACCGG
CGCTGAAGATGAGGGCCCCTACGTGAGCGAGCTAACGTGGAGCGATAGGG
GTCCTGATTTAATGAGGGTGGACAATATATAATGTAAAAGAAGCCTAATC
ATTGATATCATTGAATTTAAAGACAGTCGTTACTATGTACAGTGTATGGA
CAGCTGTCAATCGTTTTGCAATGCATTGTCAGGTGGGCGGAGCCAAGATG
AAGCAAACATCGCCATAGAAACTATCAAGCAGTCTTGTCCAGAAGCCAAA
GGTAAGAGGTCAATTGCATATTTTAAAAAAATGTCTTTTTCACGTCCTTG
TTTGCTGTTGCAGCTTTTTTTAAAGTATTGTCACATCTTTTTAAAGTATT
GTCACATTTTATACAACCTACATGTACATTACTATTGCCAATCCCAAACT
GAAAGTTGAATGTGTTTTACCCACAGTTGAGTTTATCAGATTGGACCTGG
CATCTATGAAGTCCATCCATGAGTTTGTAGAAAAGTTCAAGTCCAGACAA
CTACCATTACATCTGCTTATCAACAATGGTATGTACCCATTGATATTGAT
ATGTCAAAATATTTCACTTGGAAATTATGTCACTGTGACATCAATATGTT
TCTTCAACTGTTGCATTTTCTATGTATTTTTTTAATCATCATCCTGGTTT
TGTGATCTTTTTCTTTATCTATTATTTGCCTGAATGAATAGAGGTCCATA
AATAGTAGTGTAATGTAATAAAATATTGATGTACCCTCTGACTTTGACCT
AAAAAAGTGTCATATATTCCATTTAACAGCTCTGAACTACTCCAAGATAT
ATATTCATAGAAGGGCACTCCATACTTTAAACTCACTTGCCCAGTCCCAT
GCTTAAAGAAAACTATAAATGTCTATAAAATGATAATATCATAAGAAGAT
TTGATCAATATAAAAGTTTCTCTAGCTGACTGCTACCCACACCTGTGTCA
GGGAATCCCGCAGTAGTATAATTAAATACTCTTGATGGTTTATTGGTCCG
AAATTACCCATGCAATGGCAGCCAGTGCTGAATTACTGCAGGGTTTACGA
TCATATAATACAGAATAGATACATATTTGCTCCACATTTTCACTTTGTGC
AACTGTCGCAAGGGTCTGGGCGGCTGCCATTCGGCGCCAGCAGGTGACCT
CAATACGACCTTCCCCAACCGAAGTCAGGTACCCATTCACACCTGGGTAG
AGTGAGCCTTTTGATCTTGATCTTGATCGGTTACTGGGCAACACCCCTCT
TGAAACTACTACTCTCTCTCTGCAGCTGGAGTGATGTTGACCCCTTACAG
TCTAACAGAGGATGGATTTGAGACACACTTTGGAATCAACCACCTCGGTC
ACTTCCTGCTGACCAACCTGTTACTGGACATCCTGAGGTCCAGTGGAAAA
CCTGACCACTGGTCAAGAATACTATTTGTATCTTCGGTGGTACATTTCAT
TGGAGATATCGACTTTCCTGACTTAAATAGCAGGTAATGGTTAGGAGCTT
ACTAGTAGTTCACTTGACTTTATTCTGTTGAAAATCATTGCCTGCTGTAA
AAGGGTAGTATGACACACAAGAAAACCAGTCAGTGACAAAAGATAGTGGA
TGCTACCTGAAACAATTGACCTTTTCTAAAGTCTATCCAGTTGCTTGAGT
ATTGTAATTCTTGATTTGTTAACTGTAACTTAATTTTAGCTGATTTAACG
GTCACAAGTCAAATTCATCATCGCTTATGTGTGATCACTTATATTTGAGA
CAGTAATGTTTGTTCCCACCGTTAGAATTAAGTGCCGTGACCTACTCCAT
TTTCCCCCAAACGCTATATTTTCCTGCCACTATATTAAAGTGATTTACAG
TATCCGTTTTCTTGCATTATAATCTAATGACTTTGATGTCTAAGCTTTAT
CGACATAGAATGACACTTACTTGACTAAGAGTTGATAGTTTTGTTTTCTA
CAGTAAGAAGGACATGAGTGTGCATTGACCAAGCCTGTTTTTTTGGCGTT
TTTTAGTTTGAGAAAACAAGGAGGTTTAAACCTCCTTGGAGAAAACAAGA
AAATATTTGTCAGCTTCTATAAAGTTTTCCTTTCTCTACAATTATCTATC
TGTTGACAGATCTTTTGAACATGCAATTTCTTTACTGATCTTTCATTTGC
AGCAAACACTACTCTCCACATGCAAGTTACGCTCAGAGTAAGCTTGCCAT
CATCCTCACCACAAATGAACTTCAGAGAAGGCTATTGGCTGACCTAAGTC
ATGTGACTGCCAATGCTCTTCATCCTGGAGTTGTGAACTCCGACCTCTAC
CAGCATGTCATGTGGCCTTTGAGAGTGGTACAAAGGATGATGGGATGGAT
TGGTTTAACAAAGGTATTATACTAGATGTCATCATTCCAGTAGGGTCCTG
TCCTGGATCTGATTATTTGTTGTTACTTGTATTTCAAAATACTATAAAGT
AAACAAAATAAGGAGGGAAATATTCCGCATTTGCTTGCAAATGATGGCTC
ACTACCCTAGATCTGCTTTTGTCTATTGAATATGCAAAAGATACAAATAG
CTTGTCACAGGGTGTCCCTGTGGTGTAGTGGTCTGCGCTTCTGTTACTTT
CCACATCTGGTTCTGATTACTTGGAACCAGAAGGCCTGAGTTCAACTCCC
GGCTAGGACACCTCTGGACAAGAGGCGCATTGAGTCATCCCAAAGACTTT
ATAAAAATGGTACATACGTGTGGCCCAGGGCTATGAAACGGTGATGGACT
CCGCCCTATACACCTTATGGTGTGGGAGGATTTTAACCAACTAACTTGTC
ACATATACCTCAGACACAGACATGTACATGTATTTAATTTCCAGACACCT
GAACAAGGTGCCGACACCATCTTGTATGCTGCCATGTCTCCTGACCTCGA
GGGCATAGGAGGTCGTTACCTTGACAACTGTCAGGAAGTCCCCTCCAGCG
ACCAATCATATGACAAAGACTTACAGAAGAGACTTTGGGAGGAGAGCTGT
AGACTTGTACATTTGGAGAACCTTTCTTTAAATGCATGATAATCGAGTAT
ATAAGATGAACTGTAGTAGTAGTCCAC

Coding sequence (CDS) from alignment at Sc0000018:2260423..2264549+

>transcript:BL97409_cuf13 ID=transcript:BL97409_cuf13|Name=transcript:BL97409_cuf13|organism=Branchiostoma lanceolatum|type=CDS|length=912bp|location=Sequence derived from alignment at Sc0000018:2260423..2264549+ (Branchiostoma lanceolatum)
AAGATGGCGCTCTCCATGATCAAAACGTATCTTGTTGGACTTCAAGCGAC
GATTTCTCAGCTATTGCAGGGCCACCGATGTCTGAAAGATCAACCAAGAC
AAGATGGGAAGGTTGCCATAGTAACAGGTGGGCGGAGCCAAGATGAAGCA
AACATCGCCATAGAAACTATCAAGCAGTCTTGTCCAGAAGCCAAAGTTGA
GTTTATCAGATTGGACCTGGCATCTATGAAGTCCATCCATGAGTTTGTAG
AAAAGTTCAAGTCCAGACAACTACCATTACATCTGCTTATCAACAATGCT
GGAGTGATGTTGACCCCTTACAGTCTAACAGAGGATGGATTTGAGACACA
CTTTGGAATCAACCACCTCGGTCACTTCCTGCTGACCAACCTGTTACTGG
ACATCCTGAGGTCCAGTGGAAAACCTGACCACTGGTCAAGAATACTATTT
GTATCTTCGGTGGTACATTTCATTGGAGATATCGACTTTCCTGACTTAAA
TAGCAGCAAACACTACTCTCCACATGCAAGTTACGCTCAGAGTAAGCTTG
CCATCATCCTCACCACAAATGAACTTCAGAGAAGGCTATTGGCTGACCTA
AGTCATGTGACTGCCAATGCTCTTCATCCTGGAGTTGTGAACTCCGACCT
CTACCAGCATGTCATGTGGCCTTTGAGAGTGGTACAAAGGATGATGGGAT
GGATTGGTTTAACAAAGACACCTGAACAAGGTGCCGACACCATCTTGTAT
GCTGCCATGTCTCCTGACCTCGAGGGCATAGGAGGTCGTTACCTTGACAA
CTGTCAGGAAGTCCCCTCCAGCGACCAATCATATGACAAAGACTTACAGA
AGAGACTTTGGGAGGAGAGCTGTAGACTTGTACATTTGGAGAACCTTTCT
TTAAATGCATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97409gene:BL97409Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97409_cuf13transcript:BL97409_cuf13-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97409_cuf13-E1BL97409_cuf13-E1-1564476830-138622Branchiostoma lanceolatumexon
BL97409_cuf13-E2BL97409_cuf13-E2-1564476830-138624Branchiostoma lanceolatumexon
BL97409_cuf13-E3BL97409_cuf13-E3-1564476830-138626Branchiostoma lanceolatumexon
BL97409_cuf13-E4BL97409_cuf13-E4-1564476830-138628Branchiostoma lanceolatumexon
BL97409_cuf13-E5BL97409_cuf13-E5-1564476830-138630Branchiostoma lanceolatumexon
BL97409_cuf13-E6BL97409_cuf13-E6-1564476830-138632Branchiostoma lanceolatumexon
BL97409_cuf13-E7BL97409_cuf13-E7-1564476830-138635Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000018genomeSc0000018:2260423..2264549 +
Properties
Property NameValue
Transcript idBL97409_cuf13
Biotypeprotein_coding