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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97420_cuf9 >transcript:BL97420_cuf9-protein ID=transcript:BL97420_cuf9-protein|Name=transcript:BL97420_cuf9|organism=Branchiostoma lanceolatum|type=polypeptide|length=382bp
GFYTELDLDGALFLNLANYPELKRFCDTSPYLGVYVDYDDRLAEVNDLQN
NMAWQHIALTCPDAGLSIEMFHNMRTQNDKISAGFPTQVNFTVSIANLGG
TIPQASRGVPNIALKLLLSDTLDMRYAGLDTDGVGALELETTFIFKEEDE
PLRKSVWPSGSTRTFTDVSATMIIPIEKCQTELYLCLTYDTEVMLGLQDW
TSADNMMCANVSTGRSPGVWCDLDLALEPGSFTVQPLKTARVYEDTLTPV
LINVTLLNHGRPLTNGVEQLDWNVYISDQSDVFLSNLNGEGGAIMFPSSV
TYGPESHNLLQGLVNSGAELALTNLAAPISVPHDVCEITTFICVEVTLKG
ADNSRHMDATPTDNVVCSIWPADMLDCSGETP Run BLAST on NCBI mRNA from alignment at Sc0000110:597516..603397- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97420_cuf9 ID=transcript:BL97420_cuf9|Name=transcript:BL97420_cuf9|organism=Branchiostoma lanceolatum|type=mRNA|length=5882bp|location=Sequence derived from alignment at Sc0000110:597516..603397- (Branchiostoma lanceolatum)
AGGGGTTCTACACTGAGCTCGACCTGGATGGTGCCTTGTTCCTTAACCTA
GCAAACTACCCAGAGCTGAAGAGGTATCAGGCTTTTTTTCTATTATCTGA
TATCAAAACTGGAAGTTTTTCTGCAGTACCATAGAAAGCTACTAGGGGGT
CATAATGGAACCCATCCTTCATTTAGCTGACCCCTTTCCAGACACCAAAT
TCATAAAGATCCATCTACAACTTGTTGAGTTACTAGTATGCTGTCCACCC
ACAATCAAACCAACAAACAGCACCAAAAACAATTCAACTTTCTTGGAAAT
TCAAGTGTTCCAATAATTCAGGAGGAAATATAATTTTTTTCTTAAATCCT
GGCAGGTTCTGTGACACCAGTCCTTATCTTGGTGTCTACGTGGACTATGA
TGACAGGCTTGCCGAGGTCAACGACCTGCAGAACAACATGGCCTGGCAAC
ACATCGCTCTCACCTGTCCTGATGCAGGTAAAATGTTATTTTTCACCTTA
AGTGTTTTATATGATATTTCTTCATGCTTTAATTCATGATGAACGCTATT
GACTGAAAAGAAGGTGCTACAACTATTTTGACAAGATTTTTACACTGAAA
AGTTTTGGGATGTCAGTGAATTTTGTTGAAATTAAAAGCAGAGTCATCTT
AATTAATGCCTTTCTAATGTTCATGGTAAGCAAAAAACCACAACAGATGT
TCTTATTTCATATTACCATCTCAAAATACACACCTGCCAAAATTGTGAAA
AAACAGTTTTATGTTTTGAGTTTGGGCCACACCAAACACAAGAGCGAAAT
GCAAATCAAACATGGTAGTACTTGGGCATGGTCGTAAAAAAAAAAGACTT
GACAGCTGTGGCACACTTGAAAAGTTGCCTGCTTTCAAATATGCTCCTAA
TAGGGTGCAATATCATTGCACTTTCACTGCCAAATGGCACTATGAAAAGG
GGTTGGGTTAGTTCAAATAACTTTGTAGAAAATTGGCCAGAAAAGTGACT
TAAGATAGATGGTCCTGATGTTACATAATGCTGCCTCAATGCCCAACAAT
AGTGACAAAAGCTTATTTCATTGCACTATATACATGTCAAGGACTTAGCA
TCGAGATGTTCCACAACATGAGGACCCAGAATGACAAGATTTCAGCCGGT
TTCCCAACACAAGTCAACTTCACCGTCAGCATCGCAAACCTGGGTGGTAC
CATTCCACAAGCCAGCAGAGGGGTGCCCAACATTGCCCTAAAACTCCTTC
TGTCAGACACATTAGACATGAGGTAGGGCTCTGTGTACTAGTTGCTGCAA
GATGCGGAATGTAACACAATACTTGTAATGTCACAATAATTGTAATTTTA
TGGTTTTGAATTTCTGTCCTCAATTTGGCTTGTTTTACAACATTTATTTT
CTTGGAGTATTTCTCAGCAATAGATCATAAACCTTAAGCACATTGAAGTA
GCCATTTGCTTACCAACTCTGTTGGTTATAGATGGGGTTAGGCAGCAGGG
AGAAGGTTAAAAGGCTGTGAATGGATTGTCATTATTGATGTTCATGGGTA
GGACTTTTCCTATGGAACTAGATAATGAAATTATGAGAAAGATCAAGATA
TGGGGGAAATGATAAAGTCTTGGTGAAGTATTGCAGTCTCTACAGTCTAT
TTTGCATTGAGGTGACTTGTTTAATCCTTCTGCAGGTATGCTGGACTGGA
CACGGATGGGGTGGGTGCCCTTGAACTTGAGACAACTTTTATCTTTAAGG
AGGAGGATGAACCCTTGAGGAAGTCTGTCTGGCCATCAGGAAGCACAAGG
ACATTTACAGGTGAGATCTTATCTTCATTCTTAGTTTTGCAGTATTGTCA
GACTGCTGTCAATGTCATTCAATGGGTCTTCTAGAACCTACCGGTACTGT
AAGCATGCCAATAATAACAATTATAATGATGAACTGCTCTTGAATACAAA
TTATCAATGATTTTTTGAAGTCAGAACTACAATTGACAGTTCAAATCAGT
GTCTGTCCTTAGTTTACTCTACTGGTCCATTGATAAACATATTAAGCTTC
TTTGCCAAAGAATGTAGAAAGATGGTTTACTTCTAACAAAAATCATGTCA
TTGATCATAACATGTCCTTTACTTTTCCTAACCCTGTAGATGTGTCTGCA
ACCATGATCATCCCCATTGAGAAGTGCCAGACAGAGCTGTACTTGTGTTT
GACCTATGACACAGAGGTCATGTTGGGACTCCAGGACTGGACCTCAGCAG
ACAACATGATGTGTGCCAATGTCTCCACTGGGAGGAGCCCTGGAGTCTGG
TGTGATCTGGGTAATTTCACATCACTTGTATTTGTTTATTGTAATCAATT
AACCTGCATTAACGTTGATCCACCACATACTTAAATCCACCACTTTAAAA
CACATTGTGTTTGAGAGATCTCCAGTGCATCACCCCCCAGGTATGCACAG
TTTAGACATACAGGAGTGCATTATACTGGAGGATGTTGGGTTGGAGATCT
GTTTTGACGTATCTTTTCAGGGTAGCAGGGTTACATTTTGGAATAAGGTA
ATTCTCAACTTTTGGAAGCTGTCATCCCCCAAAACCAGCAAATTATAATT
TTTTGCTGACAAAGTTTCATTAGATATGTGTAATAAGCTGAAAATTAGTT
TCAAAGTAAACAACAAAACTGGTACTTTATAGATATTTAGGGAACAGACC
ACCCTCTAGCTTACCAACATCTTTTGCACTGCAGTCATTCCTCAGTAAGA
CAACTGTGGCAGCATAGTTCCAGTTTAGAACTTTTTAGAACTAATTTACA
CAAACCAGTTTTTCCAATGGGCCATCTTCAATAGTTGAAGGCATTCAATA
TGAAATTAGTCTGCTCCATATCTAAAACTGGTACTGGTATAATGCTTAGG
TCACATTCCCAAGCCGGGGCCCGGCCGGGGTGTTGGCGAAAACGAAAAAT
AAGAAATGAATATCAAGAAAATACACAATTTGTAGTTAGGAGTAATTTTT
ATATCATATTTGTCGTTCCCGCAAGCTGCCCGACCGGGCCCCGGATTGGA
AATGTGACCTAAGCATAAGACTGGATCATAAGATTTCTCTCTTCTCTAAC
CTTTTTCAGATCTTGCCCTGGAGCCAGGCTCCTTTACTGTCCAGCCCCTG
AAGACAGCCAGGGTATACGAGGACACCCTCACTCCTGTGCTCATCAATGT
CACCCTGCTGAACCACGGGAGGCCACTGACCAATGGGGTGGAGCAGCTGG
ATTGGAATGTGTACATCTCTGACCAATCAGATGTCTTCCTGTCTAATTTG
AATGGGGAGGGAGGTGCCATCATGTTTCCATCCAGTGTTACCTATGGACC
AGAGAGTCACAACCTTCTGCAGGCAAGTACATGTACATGTGAGAAGTTTG
ACCAAGATGAGCTTGACCACAGACATTTTGTGGCATGACATTGTGAACAT
GAAAGTGGCACTGGTTTAATGAAAGTTCTTTGCACAAAACTTTTTTTTGT
CCTTCTGCTTGTTCTACTTCCCACTGTTTGGAACCACATTCTTATCAGCA
CCACCCAGCAGTGATAGTAGTAGAGCTGTCATTGTTGCGCTGAGTAAGGT
AGCAGAAGGACTATCAAAATGTTGGCAGTTGATTATCATTGATTGTGTAC
AAACAAACAGCCTTTAAGTTAATACCTAGTGATTTACCAACCTACTGAAA
CTATTCATTCAATGTATACTTTCCTTAATTTTCCCAACTAACTCAAGATT
TCAATTTTGTCATTCAGGGTCTGGTGAACTCAGGTGCGGAACTTGCCCTG
ACAAACCTGGCTGCTCCAATCAGTGTTCCCCACGACGTTTGCGAAATCAC
GACATTCATCTGCGTGGAAGTGACACTGAAGGGAGCAGACAACAGTCGAC
ACATGGATGCCACCCCCACGGACAATGTGGTCTGTTCCATCTGGCCAGCT
GACATGCTGGACTGTTCTGGAGGTAAAAAGACATTAGCAGAACATCATAA
TCTCCATATTTCAGTGAACACAGGAATCGCAAATTTAAAGAATCTACTAA
AGACAGAATCAGTAATCCCTGAGGTATGCACATTCTTTGATGTTCATTCT
TGAGGCCTTGATGATATCAATTGAAATGTTTTAAACATGTGGCAGTCTTA
TTGCAGTCGAACCGCAGGTCACCCTAGAACGCGTTATTCTCTAAGATAGC
GTATTTGCCGCGTCTGGATTTGACCCCGTTGCATGGGTGTAAACAAGAGC
CTGTCGTGCAGCAAAAATACCTCAGACCTATATAATGTATATGCTTTTTC
AAATCTACGGGATTTGCCCAATACAGCAATTCAGATATTTTGCGCATTAC
AAAATATCAGCGAGCGCTGGGGCTTTCTAAACATGAGCAATTTTTGGTCA
CTTTATTTGTGCTTGTCTTTTTTACAGCTCACCTTGNCATTACAAAATAT
CAGCGAGCGCTGTGGCGTTCTAAACATGAGCAATTTTTGGTCACTTTATT
TGTGCTCGTCTTTTTTACAGCTCACCTAGATCCAATTAGCTATTTCCACA
GCATGATAGTCCATATCTTCAGCTTTAAATTGATACCAAAGTTCCTTGGT
TAATTTTAGGAGCAACGGGTTTGCCCCCAAAAAAACGAACAACATGTCAG
TTTTATGGCGTCCTTTTTCTGAATGAGAAATTGAACACAGTGTCCTTTCA
CTTTGATTTGCAAAACGTACACATTATGTACTAATATTGGCATACGTGCA
CAAGAATCCCACTTTTTCTGGCTTCTGAATAATGTCAATCTTTTTTAGAA
AATGTATTTGCAACTGCAAGAATTAGACGTTAGTCTTTTCTAAACTTCTC
CACACACCGACTGATAGTTGCAACACTACGCCTGAACTCGCCTGACCCCT
CGGCTCGAAAAATCGAACGTACCGTCTTGGTTCCATCGGTCGAACGCTGG
AGTTCGAAACTATTGACTTCAAATTTGACAATTTTTACTAAGTCGCTACC
TTGTACTAAAACCCTCTGTCTGTGCGTATTTGACTATTATCATGTAGCTT
CTTCTATTGCATGTGGTAAGCCTTGCTCATGCAGCTTCTACAACCAAAAC
ATAAGTTTTATGACACCTTGCAAAATGTATCAAAATGTAACCAAAACGCA
GGATAGTGTGTATCGGTAGATACGCCCAGGCTCGAATTTCACCACCATGA
TTTGCATGTGGTCGCAGTTTTTTTGGGGGCAAACCCGTTGCTCCTCAAAT
AAACCAACTTGAAGGTATTTTGGTATCTATTTAAAGGTGAAGAAATGGAC
TATCGCACCATGTGATTAGCTAGTTGGATCTAGGTGAACTGTAAAGAAGA
TGAGCACAGATAAATTGACCAAAAATTGCTAATGTTTCGAAAGCCACCGC
GGCCACTGTCATTTTGCAATACACGAAATATCTACAAAGCTGCACTGGGC
AAGTCCGACAGATATGAAAAAGTATAAACATTATGTAGGTCTGAGGTCTT
TTTCTTGCACCACAGGTAGTTGTTTACACCCATGCAACAGGGTCCAACCC
AGGTCCGGCCGTGACCCGGCGAACGCCGTCTTAGAGAAGGCTGCGCAGAA
CGGATGCGCATAGAGCTCTGCAGTTCGACTGAGGGGACCCAGCAAAATCA
TGATAGTTGACATCGCCTAATTTCATCCTTGATCTGAAAGAACAGTGACC
ATTTTCATAACATGTGATAATATTTGTCATGACAATTTTCATACTTTGCC
TCCCACTAGACACCATAGACCTGTACACGCGACTGTTGAACACGGGTGAC
GGTGTGTTTGTGGAGGGAGAACCACGCGACTACCAGCTGCTGCTGGCTGT
GGAGCTGGCAGGGTCGGCGACCTTCAACTTCC Coding sequence (CDS) from alignment at Sc0000110:597516..603397- >transcript:BL97420_cuf9 ID=transcript:BL97420_cuf9|Name=transcript:BL97420_cuf9|organism=Branchiostoma lanceolatum|type=CDS|length=1149bp|location=Sequence derived from alignment at Sc0000110:597516..603397- (Branchiostoma lanceolatum)
GGGTTCTACACTGAGCTCGACCTGGATGGTGCCTTGTTCCTTAACCTAGC
AAACTACCCAGAGCTGAAGAGGTTCTGTGACACCAGTCCTTATCTTGGTG
TCTACGTGGACTATGATGACAGGCTTGCCGAGGTCAACGACCTGCAGAAC
AACATGGCCTGGCAACACATCGCTCTCACCTGTCCTGATGCAGGACTTAG
CATCGAGATGTTCCACAACATGAGGACCCAGAATGACAAGATTTCAGCCG
GTTTCCCAACACAAGTCAACTTCACCGTCAGCATCGCAAACCTGGGTGGT
ACCATTCCACAAGCCAGCAGAGGGGTGCCCAACATTGCCCTAAAACTCCT
TCTGTCAGACACATTAGACATGAGGTATGCTGGACTGGACACGGATGGGG
TGGGTGCCCTTGAACTTGAGACAACTTTTATCTTTAAGGAGGAGGATGAA
CCCTTGAGGAAGTCTGTCTGGCCATCAGGAAGCACAAGGACATTTACAGA
TGTGTCTGCAACCATGATCATCCCCATTGAGAAGTGCCAGACAGAGCTGT
ACTTGTGTTTGACCTATGACACAGAGGTCATGTTGGGACTCCAGGACTGG
ACCTCAGCAGACAACATGATGTGTGCCAATGTCTCCACTGGGAGGAGCCC
TGGAGTCTGGTGTGATCTGGATCTTGCCCTGGAGCCAGGCTCCTTTACTG
TCCAGCCCCTGAAGACAGCCAGGGTATACGAGGACACCCTCACTCCTGTG
CTCATCAATGTCACCCTGCTGAACCACGGGAGGCCACTGACCAATGGGGT
GGAGCAGCTGGATTGGAATGTGTACATCTCTGACCAATCAGATGTCTTCC
TGTCTAATTTGAATGGGGAGGGAGGTGCCATCATGTTTCCATCCAGTGTT
ACCTATGGACCAGAGAGTCACAACCTTCTGCAGGGTCTGGTGAACTCAGG
TGCGGAACTTGCCCTGACAAACCTGGCTGCTCCAATCAGTGTTCCCCACG
ACGTTTGCGAAATCACGACATTCATCTGCGTGGAAGTGACACTGAAGGGA
GCAGACAACAGTCGACACATGGATGCCACCCCCACGGACAATGTGGTCTG
TTCCATCTGGCCAGCTGACATGCTGGACTGTTCTGGAGAGACACCATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000110 | genome | Sc0000110:597516..603397 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97420_cuf9 |
| Biotype | protein_coding |
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