transcript:BL97421_cuf10 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97421_cuf10
Unique Nametranscript:BL97421_cuf10
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97421_cuf10

>transcript:BL97421_cuf10-protein ID=transcript:BL97421_cuf10-protein|Name=transcript:BL97421_cuf10|organism=Branchiostoma lanceolatum|type=polypeptide|length=408bp
YSSADPFLDQSDLQVPITEMEVDGDMLASGLAAGHNLTFTGVRATITPSG
DMCQHRYLLVSWHQGPALDENLMDGLRDNDFSAALFDCQTDTVDISPMDG
SFEVNSPKLSPGGAKSTFSLTAEIILTGNAQLTTDPIFNISFYLSHDALW
SADDLDIEYDLDDLPSALSGDVTASEPELVLDGTGLVLPGGMSTQYCGLS
YLVAILDPQNKVEERNENNNAISTKITVSCPDDIYSVENARLEVQDMYYV
GVPAPIVFSMDVYNLGDAQIAMAREGLHNYELKVFGQQGPMLNMDAAFDL
TPEQFLFSPEWQEEHADDLHHTMTPKRYTNASAIIEISELACRKQIDHLF
LVVLSRAAGVDWILYNNWVSAEITIDSSSCTAPDAVDLMIADFGVQPTDR
LLLGGWTD
Run BLAST on NCBI

mRNA from alignment at Sc0000110:607220..612246-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97421_cuf10 ID=transcript:BL97421_cuf10|Name=transcript:BL97421_cuf10|organism=Branchiostoma lanceolatum|type=mRNA|length=5027bp|location=Sequence derived from alignment at Sc0000110:607220..612246- (Branchiostoma lanceolatum)
TACAGTTCTGCTGACCCGTTCCTAGACCAGAGTGACCTGCAGGTGCCCAT
CACTGAGATGGAGGTGGACGGAGATATGCTGGCATCAGGGCTGGCTGCCG
GGCACAACCTGACCTTTACTGGGGTCAGGGCGACCATCACACCTTCAGGG
GACATGTGTCAGCACAGGTAACGTTAGGCAGTCTTTGCTATGAGGATGAT
AACAGTTAAGTTTAAATAGGGGTATAATGTTCACTTTGTTGATGAGAAAT
ATCATGCTGACAGGGATACAAGCAAATCAAAGCTAGAATAGGAAGGGTAT
CAGGCCTATAGTCTTTTGAAAGAGCTTGTTGAGGTACCTGATGAACATAT
GCAAATAATGTAAAGGCAAGATGACAGACTCTGGTGAATAGAGACAACAG
TGGCACAGTTATCATCTTCCTAAAGCTGCACTTAAAAAGATAACAAAGCG
CTGAAACTTGATACACACAAAGGAGAAACATTCTTGAACAAAATTGTTCT
TGGCAGTAAATTTAACACCGATTTTGCAATGATGCTCTTTTTTGTTGGTA
AGACTGGAAATTTGTAAAAAAAAGAGATAGTTGGAGGCTGACAAAGTCTA
CTTATGTCACTTTGGATCAATGGATTGAGTTGAAACTCAGGATTTACAAA
TGGGAGACCATCCTAAACACATCCCTAGCAAGATAATGAGATTTGTGTAC
CACAGACCTGTTGAGAGTGGATTTACTTAAAGACCCACTATGTAGTTTTA
GGCCAATACAGAAAGTAGATTTTCCTACTGTTTCTTTGCATAGCAAGCTT
TATCAACTCTATAGAATTGCTTACCGATATTCAGGAAGGGAGGTTACAAC
ATTACTGCACCATACAAACAACTTTAAAAAACTGTTATCCTCCATCCAAA
ACAACACACAGTGTGAAACTAACACATGGCCACACATGGCTTCTGTACTT
CTTATCAGGCTGATCGCCCAGTGGGGTGCCTGTTTACAGTTCACCAGTTT
CTGTAAAAAATCATCCTTACCAGAGTTCTTGCAGTTTTGAAGGGAAAATA
ACCACACTTTATTGATACCCTTCAAAGTAGACTCTTTAGAATAAATTAAT
AGTTGTATTCTGCCCTCTTGGAAAAAGATATGAGTGTTTCCAAAGAAGAA
GAGCTTCATGACATCTGGCAGTCTAAAGTGTGCCTAAGTGATTAGACCAC
CATGGGGGTCCTCCAGTGCACTGGGATGTTGTTGTTTATCTACTATTGAG
GTGGTGTCCGGGAGTTTTTGTTTTGTTTTTGTACAGTTCACAAACACCCA
AAATAGACGAAATAATGAAAAAAATATGCTGAAAAGGGGTTGTGCATGTC
AGTACCTGCTATTAACATTAAGATTTGTTCACAAGAATATTTTCAATTTT
TGGGCCAAAATCCTACATAGTGGGCCTTTAAGCTTTGAGCATTTGCTAAA
AAAAACTGTTTGCCATTTCTACAACACAGGTATTTGCTTGTATCCTGGCA
CCAAGGCCCAGCACTAGATGAGAACCTCATGGATGGATTGAGGGATAACG
ACTTCTCTGCAGCCCTTTTTGATTGCCAGACAGGTAAATCTTTGTCTTTT
TCACCACACACTAGAGAAAGGGCACAATAGAAGCTTGTGCTGAAAATCAT
AAGATTAGGATAGAAACACCAAGTACTGATATTTAGCTACTGCTTATGTC
TAGTTGTGTCTGTTTGTGGTGCTGAAACTAGGGTGGTTGGTTTTGTTGCT
CCTTTCCACTGCAGTTTCACAATATGGTTTTCTCTATAGAATTCCTGATA
ATGTAGATTTTATTGAAAGTTAGGTAATGATGAATATCTCTTGTAACTGT
ATTGCTGCTTATCTATGTGTGGCATTGTTTTCTCTGCAGACACTGTTGAC
ATCTCGCCGATGGACGGTAGTTTTGAGGTGAACAGTCCAAAGTTGTCTCC
GGGTGGTGCAAAATCCACCTTTTCACTGACAGCAGAGGTAAGGATTTGAT
AGCATCTCATTTCCTATGATGTTAGTCACTTAGAATGGCTTAATGTCAAA
GCAGTAATTACATTTGCCAAGAATGTTATGGTTTCAGTGTCATATGTGGT
TTTGTGGATTTGTGAATAGCAGAACTCCAGAAACTGTGGATTCATCAGTA
TGATATTTAGTAGGTGGTAGCAAAATAAAGGAGATCATATCATGTGTTCT
TATTTTGTTTATTTGTTTTTGTTTATTTATTTCGCACTTAAAAATATACA
TACATAAAAAATTTGTGTGCACAAATTTGTGTGCATTGACTTTTTCAGAT
AATCCTGACCGGAAATGCTCAGCTCACCACGGACCCCATCTTCAACATCA
GCTTCTATCTATCCCATGATGCCTTGTGGAGTGCTGATGACCTTGACATA
GAGTATGACCTTGATGACCTTCCCTCAGCCCTGTCAGGTGATGTGACAGC
TTCAGAACCTGAACTTGTACTTGATGGTACAGGGCTGGTAAGTGATGAAA
TACCTTACATTATATTATTCTACAATGATGCTGATTTCCATTTTTCTAGA
AATCTAAATCTAATATTTCAAAAATTTCCTTAACTTGAAAATAAAAGTAA
TGCTATAACGTTACATTTAATTTAGTAGTAGAAAGAAAAATTGTATGATT
GGGATTTTACCACATTGGTTTACATCTTTTACAGTACATGTAGCTTGAAT
CTCATATTTCTATCACTCCATGTCAAAGTTGAACCAAAGTGTATTGTAAA
GAGTTTCTCTTTCTGATGTACATGCTGGCATTACTAAGTAATACGTACAG
AAAGAACATTACATGTGGACTGAAGTATGTTAAAGATTCTGTTATTGTGT
CACCATTCTCCTAGGTGCTGCCAGGTGGTATGAGTACCCAGTACTGCGGT
CTGTCCTACCTGGTTGCCATCCTGGACCCACAGAACAAAGTAGAAGAGAG
GAATGAAAACAACAATGCCATCTCCACTAAGATCACAGTATCGTGTCCTG
ATGGCAAGTTATAAATTAATATTCAGTTAGCACTCAAGTCTTATTACGAT
AATCTTTTGTATCTTTGCAAAGTTGTATTAATGTACTTAAGAAGATGCTG
TAACTGTACATACTGACTTTTTGGGTTTTTTAAGTGACCATACCACTAAA
AAATTATGACATTGCAAATACATGTATTCATTTCCATAGCATTAATACTC
TACTACAGAATTGTTTCAGTCGCAACCTGAAAACACTGCAAAAACCTGCT
TTTCGCACAAGCACCTATAAGGAAATCAAGTCTCAGCAAAGGTAAATGGA
TTTACAGTACTCCTTATGAACTGTGAATTTGTGTTGAATGTTCTCTTGTC
CATATCTTTCAGACATCTACTCGGTGGAAAATGCCAGACTGGAGGTACAG
GACATGTATTATGTCGGGGTTCCAGCACCCATTGTGTTCTCTATGGATGT
CTACAATCTAGGGGATGCCCAGATAGCCATGGCAAGGGAAGGCCTTCATA
ACTATGAGCTAAAGGTAAACAAACTGGCCTTATTTTCAAAATCTATTACA
GACTAATAATAAAAAAAAAGTTGTCAGTGTGATCCTGTACAAGCCATATT
CTAACTTCCAAGCTGTCTTTTAAATGTGATTTGGAGAACAGCAACCAGCA
TAATAGATACACCATACAGTATCATGTATTTGACCTTTTGAAGTTCTTGT
TTTGTCCTGAATACATTTTCATGAGTTCTCATGGTCTTCTTAGAATTAGT
GCTTCAGACAAAAGGAGGTACCCTGTTAAAAAATAACAAAAACCAACATT
TTTTATACTCATTCCTGCAGGTGTTTGGACAGCAGGGCCCCATGTTGAAC
ATGGACGCGGCCTTTGACCTGACCCCAGAACAGTTCCTGTTCTCTCCCGA
GTGGCAGGAGGAGCACGCTGACGACCTTCACCACACCATGACCCCTAAAC
GCTACACCAATGCATCGGCCATCATAGGTTGGTGTATCATAGTTGTCACT
GTCTTACCTTTGAAACACATGGCTGCCCAGTGCCACTGCATATTAACCAT
TTCTTCTTTGGTACAATTTTTCACAGACTCAGGCAGCACAGCATATATAA
GCTACCTAGTGTAGAAAAAAGTGTAATCAAAGTCAAAATAGAAATAAAAC
ATCCACCTCTTGTGCAGCAAAAAGTAAAATTAAAGCCAGATCAGTACTTA
ACATGCACCTCTTGTGCAGCAGAAAGTAAAATCAAAGCCAGATCAGTAGG
TATCATAGATACATGTTAAGAATAGTATTGGGGCATTTGTGTTGTGAAGA
CACTATGAGTACTGAAGAAAGAATCTTAACTCTTCTTGTTTTGCTTGTTA
CAGAGATATCAGAGCTTGCGTGCAGGAAACAGATAGACCACTTGTTCCTG
GTTGTCCTGTCCAGAGCTGCTGGTGTGGACTGGATCCTCTATAACAACTG
GGTGTCAGCTGAGATCACCATAGACTCTTCAAGCTGTACTGCACCAGGTA
TGTCATGGTACTCATGAATTCTTTTGAATGTGAAGGGCAGAAAGATTACA
GGATGGAACTTTATGTTTGACTCAAAGTATCTAGAAATCAGTTGGTGCTA
TGAGAAAATCTATAGATTACATGTAGATATTAAAATGTGTGACAATTGGA
CAGTTGGAGATAGATTGTACTTGGGCACATCCTTTGTATGACACAAGATC
CCTTCCTCACATGCAAAAGGCAGCCAATGTTTTGTTCAGTAAAGGAGCTT
ACACCTAGAGAAGGAAGACCTTGCGAGAGTCTCCAGGGATGTCTCATTGA
TAACTGAAAGCTATTCAGTATACAATGTAACATCGAAACGGTGTTTGTTA
ACTTTACTAGGCTGTATGTTGTCTAGTGTTGTTACCAGTTGCATGTTTCA
ATAAAAAGGTTTTAAAAAGAATGATTTAAAAGATTTCTTTTCCCCTTGCA
GATGCTGTGGACCTGATGATTGCAGACTTTGGAGTTCAGCCCACAGACAG
ACTGCTGCTGGGAGGGTGGACAGATCT

Coding sequence (CDS) from alignment at Sc0000110:607220..612246-

>transcript:BL97421_cuf10 ID=transcript:BL97421_cuf10|Name=transcript:BL97421_cuf10|organism=Branchiostoma lanceolatum|type=CDS|length=1224bp|location=Sequence derived from alignment at Sc0000110:607220..612246- (Branchiostoma lanceolatum)
TACAGTTCTGCTGACCCGTTCCTAGACCAGAGTGACCTGCAGGTGCCCAT
CACTGAGATGGAGGTGGACGGAGATATGCTGGCATCAGGGCTGGCTGCCG
GGCACAACCTGACCTTTACTGGGGTCAGGGCGACCATCACACCTTCAGGG
GACATGTGTCAGCACAGGTATTTGCTTGTATCCTGGCACCAAGGCCCAGC
ACTAGATGAGAACCTCATGGATGGATTGAGGGATAACGACTTCTCTGCAG
CCCTTTTTGATTGCCAGACAGACACTGTTGACATCTCGCCGATGGACGGT
AGTTTTGAGGTGAACAGTCCAAAGTTGTCTCCGGGTGGTGCAAAATCCAC
CTTTTCACTGACAGCAGAGATAATCCTGACCGGAAATGCTCAGCTCACCA
CGGACCCCATCTTCAACATCAGCTTCTATCTATCCCATGATGCCTTGTGG
AGTGCTGATGACCTTGACATAGAGTATGACCTTGATGACCTTCCCTCAGC
CCTGTCAGGTGATGTGACAGCTTCAGAACCTGAACTTGTACTTGATGGTA
CAGGGCTGGTGCTGCCAGGTGGTATGAGTACCCAGTACTGCGGTCTGTCC
TACCTGGTTGCCATCCTGGACCCACAGAACAAAGTAGAAGAGAGGAATGA
AAACAACAATGCCATCTCCACTAAGATCACAGTATCGTGTCCTGATGACA
TCTACTCGGTGGAAAATGCCAGACTGGAGGTACAGGACATGTATTATGTC
GGGGTTCCAGCACCCATTGTGTTCTCTATGGATGTCTACAATCTAGGGGA
TGCCCAGATAGCCATGGCAAGGGAAGGCCTTCATAACTATGAGCTAAAGG
TGTTTGGACAGCAGGGCCCCATGTTGAACATGGACGCGGCCTTTGACCTG
ACCCCAGAACAGTTCCTGTTCTCTCCCGAGTGGCAGGAGGAGCACGCTGA
CGACCTTCACCACACCATGACCCCTAAACGCTACACCAATGCATCGGCCA
TCATAGAGATATCAGAGCTTGCGTGCAGGAAACAGATAGACCACTTGTTC
CTGGTTGTCCTGTCCAGAGCTGCTGGTGTGGACTGGATCCTCTATAACAA
CTGGGTGTCAGCTGAGATCACCATAGACTCTTCAAGCTGTACTGCACCAG
ATGCTGTGGACCTGATGATTGCAGACTTTGGAGTTCAGCCCACAGACAGA
CTGCTGCTGGGAGGGTGGACAGAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97421gene:BL97421Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97421_cuf10transcript:BL97421_cuf10-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97421_cuf10-E1BL97421_cuf10-E1-1564476830-312896Branchiostoma lanceolatumexon
BL97421_cuf10-E2BL97421_cuf10-E2-1564476830-312894Branchiostoma lanceolatumexon
BL97421_cuf10-E3BL97421_cuf10-E3-1564476830-312892Branchiostoma lanceolatumexon
BL97421_cuf10-E4BL97421_cuf10-E4-1564476830-312890Branchiostoma lanceolatumexon
BL97421_cuf10-E5BL97421_cuf10-E5-1564476830-312888Branchiostoma lanceolatumexon
BL97421_cuf10-E6BL97421_cuf10-E6-1564476830-312886Branchiostoma lanceolatumexon
BL97421_cuf10-E7BL97421_cuf10-E7-1564476830-312884Branchiostoma lanceolatumexon
BL97421_cuf10-E8BL97421_cuf10-E8-1564476830-312882Branchiostoma lanceolatumexon
BL97421_cuf10-E9BL97421_cuf10-E9-1564476830-312880Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000110genomeSc0000110:607220..612246 -
Properties
Property NameValue
Transcript idBL97421_cuf10
Biotypeprotein_coding