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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97422_cuf12 >transcript:BL97422_cuf12-protein ID=transcript:BL97422_cuf12-protein|Name=transcript:BL97422_cuf12|organism=Branchiostoma lanceolatum|type=polypeptide|length=285bp
VVNFRNCPAAMDVAVDKFSVTEFSSVELGEDMSLSLKMSIILVGTNSRLS
NMARDVEFNNYDIRFYLSEDEHITEEDLQLPYDVDSIHQLKEGISAPLVE
HDAKVVTYDLSSGINNPTITVPMNPDLCGKIVYIGVEVVALTFTDAYLKN
NKAVQRVTVLCTEEKLVPHKVNFDLSNAKVWPGLDYQLNMDFLLMNLGFH
TVPAGGSAYSIRVFLSADSVFDDSEDTPLVVDFGDSLGQTSQKILANQHV
DFMGLSVPIRLDTREACLEMSNMHVFLQVVPDVSY Run BLAST on NCBI mRNA from alignment at Sc0000110:615726..624851- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97422_cuf12 ID=transcript:BL97422_cuf12|Name=transcript:BL97422_cuf12|organism=Branchiostoma lanceolatum|type=mRNA|length=9126bp|location=Sequence derived from alignment at Sc0000110:615726..624851- (Branchiostoma lanceolatum)
TGGTGGTCAACTTCAGGAATTGCCCAGGTGAGAGATGTTGATTTTTTAGA
CTGAATTTGTTTCAAGACTTGAATTACTGGTGGAAAAAATGATATTGGGA
ATGAAGATGGAAGCAAAGAAATTAAGAAGAAACCTTCAGTTGAACAATAC
CCTGTCTCCAATTCTCAAAAAAAGAAATACAATAAATACTAGAAAGGCAA
CATTTGCGAGCAAATACAGCATGTTTAGCCATACTCCTCGCCATGCAAAA
AATGGACTCTCCCAAAATAACAATGGACCATTCTAGAATACTTGCACTAA
AAAAATGAATCACCCAGTCCAAAATTGAGTCTTCCAGTAGCACCTCAACA
CAATATGGACCAGTCCACAACCATATCCACTTATTGATTAACAAATACAC
TTCTGCTAACAAATGGACTTTTTCATAATCATTCCAGCTCAAAATTGAAA
GAAATAATTAAAGAATCCTCCCCTTGCAAGAATGGGATATTCCGTGCCAT
TTCCATGTAAACCAGTCGAAAAATATCCGCTGAAAATTACACTCTTGCGC
ATAATCAACCCAGTTCAAAATTGAATTAAAAAAGATCAACCCCAGGGAAG
AATGAAGTTTTCCATAGTATACATATGAAGATTTGACAGGAGAAGAAGGA
AATGACCAAAAACAACATATTTGAGTCAATTCCAAGTCACCGAGAGGGTT
TTAATATAATATTTGTAATATGTTTGAACTATTTTGATTAAAAGAATGTC
TAAGTCACAATAGTTCTAAAGTGTTCAAACAATTAGAATTGAAACTTATA
ACATGTTTGAACTTATTTCACATACGTTGGAAACATTTCGAACGTAACTA
CACAAAAATCTCTTTATTTAGAACAGTTTCAAACCATCTATCCAAATGTT
TCAATGTTCGAACAATTTGTAACAAAAGATTTTCACAATTGCCCTCATAA
ACGAAGGTGCTAAGTCCTCCTGTGTGTTTCTGCCTATTTTCGGTGGCCGC
GCTAGACCACCAGCGGATTTGTTTTGACGGAGCGTCACCCGCGCGCGACG
ATGTACACTGTTCGGCACCGCTAATATCCGGCATTTTCCCGCTCCAAAAC
ACTCCACAAGACCCACGTTTTTAGTGTTTTGCCTCTTGTGCAACACGATT
CGATTTGCATTACTAACGGGACGAAAATGATAGAAAAAATTCACCCCGTC
CCGGCGTCCGTCCCAAAAACATGAACGACATGAAAATATATTTTCTTACA
GATTCAATCACGAAAATCAACAGCATGGGATTCCAAATTTTCGCAACGGC
CGACCATTTATCATGGTTGAACTTCCTTCCAAGGCGTGCGATAGATAAAC
ATTCCCGGCACATAATAGTCACTAGTACCAGACTAACGCAAGCTCATGAT
GATAATAGGGAGAAAGTTTGTCAGTGAAGTTTGGCCACCAGAGGGTACAT
TCATTTAACGTTACAAGCTAGCGCAAAGGGGCGAATCATTGACCTTACCG
GGGACTGACTCTACTGGCCTAATCATTCCTTTTTTGCCGAATTCTACGAT
CCATACGCCCGTACGTAGGACATGTAGGAAGGCCTGGTGGTGGACGCTAC
ACATCACGGGAGACGCGTGTTGGTCCGAGACAGACAGCGGCGTGCTTTCG
ATCGCGTAGCGGCGACGCACCGCTGCGACAACGTGCGGGACCAAAACGCC
TGTCCCCAGTGAGACCATGTGTTTTGCGCGGCATGCCCCGAATCCGTCTA
CCATTGCTGAATGTANTAGTATGGGTGAAATATAAAAATGTGACACCCCT
TTGTTTGAATGTACTTTGGGTTGAAAATAACGAAACGAAAAAATTCTTTG
TTTAAAAAATCGTTTTGAAAGGCTGTATGCCAAACATTTGAATGAGGGCC
TGTGTACATGACCAAGGCAGACACATACCAGATTTCACATTATTTTGGTT
TAATACATAGGAACTGGAGATGTGTATCTTTGTTAAAAAAAGAGTGAACA
AAGCCATGTAATCACATGTCCTAGGAATTCCCATACCATATTTGGCATGA
ATACTAGCACACCTGCGCCAGGAATGCAAGATAATTAGATTAACCCAATT
GACCAATCAGGTGGTCGCAAGGCTCACAGGCATGCAAGGCCAGGTGCAAG
GCACTTGGGGTCAATGACCTTTAGGTCATATGTAGTATTGAAAGTGACAG
AAGTGGCAAATATTGTCAAGAAAGCCCAAAATAAATCGTTTTGAATATAT
GTATGCCAAAAATGGGAATGTAGTCCTTTAAATATTTGTTCAAGCCACAT
ATACAGCAAATTTCAGGTCATTCGGTTGAAATACCAGGGCGCAGGAGGCC
AAGATATGCTAAAAATAGCCTAAAAACCTCAATAAAATCACTTTCAAGGT
CAATATCAAAAAAAGGAAAAGAACGTACATTGGTTTTTGCCTACATTACC
TCTGTACCAAATTTCAGGTCATTTGGTCAAAAAATGACAGAGATGAATCG
ATTTGAAGATTTGACAGGAGAAGAAGAAGAAGGAGAAGAAACATGAGTAA
AAACAATATGTTGAGCCATACTAGGTATGGCTAAACATAATTAACCTTTG
GTATACAGGCAATGATGGTTGCCTTCCACTGTTTTGGTTGTTCTTCTGCT
CTTCTTCTAAAGACAATGCTGAATAAAGATACTGTAGCGCCACCTAGCGG
TAGAAGTAGAAACAGTCAGCATAACCATGCCCTCATTAAGGTGGCAGATG
AAACCCTGAAATGTTGACATGTCATGTACTTGTTATTGTTTGTGTGCAAA
GATTACCTTAACATCCATGAATTTACTGACCTGATGAAAGTATTCACTAA
GTGTATTTACCTTCATCTGCCTGACCAGCTGCCATGGATGTAGCTGTGGA
CAAGTTCTCAGTCACAGAGTTCTCCAGTGTTGAACTCGGAGAAGACATGT
CTCTGTCCCTGAAGGTTAGTTGAAGATAATTCATTACCATCATACAAAGA
TAGATAGGTTCTGGGTTTGAGTCCCTAGGAAGTCCCAATGATGTTCCTTT
GGGACCCTAGGGATGTCTCCTTGCTTGCCAATGGATAGGATGTAAAGTCG
GAGGTCGTATGTTTGACAAGAGCCAGACCTCGAGGAAATTATAGAACCCA
CCACACTTATCAATTTAAGAGTAGGGGTCCATCCTGGTGTAAGTGGGTTT
AACCTATCAGTCTGGTATAACACAGATTGTACCTAATGTACAAAAAAGGT
CTGTTATGTATTTAGGTGCATTTCACAAGTTCTGCAAACAAACAAACAGA
CAAAATGCTGATGACATGTCTGTACCCTGTGTACAGATGTCCATCATCCT
TGTGGGTACCAACAGCAGGCTCTCCAACATGGCCAGGGATGTGGAGTTCA
ACAATTATGACATCAGATTCTACCTGTCTGAAGATGAGCACATCACCGAA
GAAGGTGATGGCATTTACAGTGGTGTCTACTTGTATATCTACCTTAAAAG
TATTCATGCAATAATAAAATACTATGTATCCTATCCATTGTAGGTTTCAA
TACTAGATTGTGAATTGTTTTGAAAAAATCCAATGTGATAAATCAAACTT
TAAGCTTTTCTGGTTTGTTTGATCAATACTTTATAATTTTTCATTGAAGT
CAGTAACTAAATTGCCAAATGTGAGTACAATGTACAGATGTATAGTAATG
AGTGAAATACAAATGGCCCTGTATGGTAGACATAAACCCTTTTTGCATAG
TGGAAATACCCCTTTACAGGCTTGTAAGTCTATTCTTTTCCTTTATCAGA
TCTACAACTGCCCTATGATGTGGACAGCATCCACCAATTGAAGGAAGGGA
TCTCAGCTCCATTGGTTGAACATGATGCCAAGGTCGTGACCTATGACCTG
AGTTCAGGCATCAACAACCCCACCATCACTGTGCCCATGAACCCTGACCT
TTGTGGCAAAATTGTGTAAGTAGCAAAAGTTCAAGAGGAATCACTTTCTT
TGGTATGTTACAAAGAGTCATGTTTTACAACACCTATTCTATGGATGGCA
TGTTCAGCACCAAGGAAAGGGAAGACAAAGTCTGTTTGCTGTTGTGATTG
ATGCATTTAGGCTTACCAACAGCTGCTGTTTTGGATCTTGTTGGAGAAAC
AGTTCAGTCATGAAATATTATCAAGTGTCTTGTGATCTTCGTGATAAGAT
ATTCAGTCATTGAATCCATTTATATTACCTGCATTCTGTATTCAAGGGTA
CCGAAAATACTTGATAGATGGTTATCTTATCAAACTTTGTCTTTTCCATC
AGATATCTTATCAAACCTTGTCTTTCTATCAGATACATTGGAGTTGAAGT
CGTGGCACTGACATTCACGGATGCATACCTGAAGAACAACAAAGCTGTGC
AAAGGGTCACAGTGTTATGCACAGGTATTCAACTCTTGCTTTACTTTTAC
TACAAGATTATGTAGCCATTAGAAACTAGGACATATAGTTCATAGCGGTT
TGAGCAAAACTGCTGTTTATTTCACTGTGACATGTTAAATCCAACCTCAA
GTTGACAGAAATTGTTGAAATTACCATTTCCAATCCTGGACTAATAGGCC
AGGCTGAAATTGTTATATACTGTACGGTAGAAAATATTGCATGTTCCCTT
GCTGAAAGTGAATTCTAACTTATCTCAATCCAATTTAGCTTTTGGTGCCC
TTCGGTGTAACACACCAGCCTAACGCGCTGGTTTTGATAGGGAAGACAGA
TGCTATCTACAGTATTTACAGGGTAATTGTGCCAGGGAAATTCCCCTAGC
TAATTTCGACAAGTACAATGAACAGCAGACCACAGCTTAACGTCCACCCT
AAGGACTGCTGAAACTATTATCTCCTTGCCATCTTGCTATGATTACTCTT
TCCCTGTAATGGACTCATTGCTTTGATTTACTCCTGAAGAGCTGTTGTGG
TATATGTCTTTACCAACAGTACAACTGACCTTATTACTGGCTCTCCCTTA
GGTACTGCTTTGCTATCCTTTCTCTACTAGAAATGGTAAGCATGTCTCCT
TGCTATGCTCTGGTCATTAGACCTGTGACCATTTGTGTCTTTTACCTTGT
AGAGCAATACTGTACACAAAGAAGAAACAAAAACGGGTTAAGCATCTTGC
AGTTGTTTTGATCGTATGGGCTAAAATCATTGCATTAGAGGGGTATCATT
ATAGTATACTGTCCGTTGTTGTGGTATCAACTTTTTTTGGGCTCTAAAAT
CTTAATATGTGAAGTCCTAATTTTCTTTGAAAACAAAATGAAACGATGTC
ATTAGTTTTGATTTGTTCATCTTGTGTCATAAGGTTATTTGACAACAAAA
GCTACATATTCTTTGCTCTTGTTTTTTTTATAGAGGAGAAGCTTGTACCT
CACAAGGTGAACTTTGACCTGAGCAATGCCAAGGTGTGGCCAGGCCTGGA
CTATCAACTCAACATGGACTTTCTGCTGATGAACCTGGGGTTCCACACTG
TGCCTGCTGGGGGATCAGGTGAAGACTTAGCTTTATAAACAGTTTTGATT
GGGCACCTGCAGACTCATGGTGGGTGTTGGGAACCTCCAAGCAGATGTAA
GGGTCTATCTAGTACATGTAATTCTTGGTGCTTGAAAATTAGGGTATTGG
TGTGGTCATGTAATTTTTGGCTTGTTAACTGTACTGTAGATTCACTCACT
TTTGCAGGGACTTAATTTTGCAGTAGAAGGGGAAAGGAGGATTAGATTTG
CAATTGAAATGTTATGTACAGTAGCAAAACTTTAATATGTCTTAAACTAG
CTGTGTGCAAAGCAAGAACCTAAACAATAGCAAATAGAAATGTTTCCAAC
AGTTGACAACAATTTGAATTTTTTTCCTTTCAGCCTACAGCATACGTGTG
TTCCTGTCTGCTGACTCTGTGTTTGATGACAGTGAGGACACGCCTTTGGT
TGTTGATTTTGGTGACAGTTTGGGACAGACAAGTCAGAAAATCCTGGCAA
ACCAGCATGTGGACTTCATGGGACTCTCAGGTTAGATTGTTTCCCAAATA
ATTTATTATGTTTATTGGGTATTAAACATATGCAACCACTAACAATTACA
TTTTGTGCCTGCCAATGTTTATAGAGTATAAGCTAAGTCCTTGTGCTGTC
TTCAACAGAGCAAAACTAACTTGTTCTTTCCGGTAATTGTTAGAGATTGT
GTACAAAGTACCTTCAANATACGGTAAGTTTTGCCTAAGCTCAGTGAGGG
ATCTGGAGAACACCAGCAGGAAGATTGCGGACTACCGGAACCATCTACGC
TTCAGTTTGCGGTGCCTCAAGGTAAGTGTCACTCCTGTCAGTTTACGCCT
AAAGACCTCCGTCAGAGGCTTCAACGCCAACAAAATCATTCTCAACGCCG
AAAGAAAGCTACTAAACGAGAGGGTAAGACAGATCAACTATAAACTGGAC
GGGCTGAACGCGAAAAAAGCTAACCTGGTACAAGTACTGAGGGAACAACT
GTCAGAAGAGACCTTTGCAGAAACTGAGAAATTCATAACACACGGACAGC
TCTCTCAACACGAGAAAGGAAAAGTCAGACAGAAGAACAAATTTGAACGT
TTGGAACAGAAGGAAATGTTTAGTTCAGCAGACAAGGACCCCAACTGGAG
ATCTAGCAGTTCCAAACCCAAAATCATAGCACTCCAAGTAGAACAGACGA
GAGGTGGGTTAAGAACCTGAGCAGTCACACTCTTACAGAACCGGAGGAAT
CCCTACTTTCCAAAGGGCTAAATTTCGCAGTAGCGCCTAACAAGATCCCC
AATATTGACATTATCACAGAAACTGAATCAGCAATTCGTCGGGCCCATAT
ACCATATAAACAGGCTGAAGCCTTACGCACCAAAGTAGCCACCACTCTGA
AAGTCTCTAAACCCCCTTCTAGCAACATCACCCGGGAAGAACAAACTGCG
CTCAAGGATTTGGCCACTAATCAAGACATAGTGATCCTTCCCGCGGACAA
GGGCAGATGCACAGTAGTCTTAGACAGAGAACAGTATGACAGAAAAGTTC
AAGACCTATTAGGGGACAAAGACACATACAGGCCCTTGAAAAAGAACCCC
ACAAACAAGTTCAAAAATGAAATCCATAAAGCTCTCGAGAAATTGAAAGA
TGACAAGTTTCTGGACCAGGCCACCTATTTCAAGCTCAATCCCAATACAG
AACAACCCCCAGCATTCTACGGCCTTCCCAAAATCCACAAACCCGGTGTC
CCTCTACGACCCATAGTATCCGGTATAGGATCTGTCACTTATAACCTAGC
AGGTTATCTGGCTAAGATCTTGGGACCGTTGGTGGGAAAGTCTCAACACC
ATGTACAGAATAGTGCAGACTTCGTCCAAAAAATCAAAGACATCACTGTA
GCAGAAGATGAAATCATCACTTCATATGATGTGTGCTCGCTTTTCACTTG
CATACCCCCTAAGGAGGCAGTATCGGTAGTTAGGGAAGCCTTGGAGGCCG
ACGACACACTTGCAGACAGAACCAAACTCTCCGTGGACCACATATGCGAA
CTGCTAGACCTCTGCCTAGGGTGCACTTATTTCACTTACAAACAACAGTT
TTTCCAGCAAGTGCACGGCTGTGCTATGGGATCACCGGTATCGCCCATTG
TTGTGAACCTGTATATGGAGAAGTTTGAGAACAAAGCCCTCAGTACTTTC
AATGGCCCTCCCCCAGCAAACTGGTTTCGCTATGTAGACGACACTTGGTG
TAGGCTAAAGAAGAGAGTAGCTGATGACTTCTTTGACCATATTAACCAGG
TAGATGACAACATCAAGTTCACACAGGAGTCGTGTCAAAACAACATGCTC
CCCTTCTTAGACACCAAAACCATCATAGAGAAGGATGGCAACCTTCAGTT
CGAAGTGTACAGGAAACCGACCCACACTGATCAATATCTGGCCTTTGATT
CCCATCACCCTTTGGAACACAAACTAGCAGTGATTAAAACTCTCTTCCAT
CGAGCAGACAATGTCATTACCTCAGACGAAGCAAAAACAGAAGAACACAG
ACATCTCCGTGTGGCTCTAGCCAAGTGTGGCTACCAAAATTGGACCTTCA
ACAAGGCCCTCAAACCTTCTGACCAGTCTAAGAAAACACTCAAGTGCAGA
CCATTGACCAACAGAAACAAGGCCAACATTACCATTCCCTACGTCCAAGG
AGTATCGGAAAAACTCAGACGTATCTTCCAAAACTTCAACATTGCCACTA
ACTTCAAACCTCACTCAACTCTCAGGCAGAAACTAGTCCATCCAAAAGAC
AGGCCTGAAAAAGGCATCAAAGCCAATGTCATCTACAAACTGAAATGTGA
GGAACCGAACTGCAATAACATGTACATTGGGGAGACAAGTCGACCACTAA
AAGAACGGTACAAGGAACATTGCAGAAAGAGCGCTAACCACTACTCCTCT
GCCATTTACCACCATCTAAAACACAACCAGGGACACTCATTCAATTTCGA
ATCCACGGACATCCTAGATCGTGAAGAACGCTGGTTCGAACGGGGAATTA
GAGAAGCAATATATGAGAGGATGTACAACCCCGCCCTCAACAGGAAAGGC
GGTCTACGCGTTCAACTTTCAGGCACCTGGGATAATGCACTGCCCACCAC
CCCCCACCCCCGGACAAGCAACATTTAGTTACTGTACTAGAACAACAGTA
GCTAATTGAACTATTGGCATAACTTTGTCTTGAGTTAATCTTCTTTTTGA
AGACTACTTCAAGACATCCTAAATTGTCTTTACCTCATTAACATATCTAT
TCAGAGTTTTGGTATAAAGCTGGTGTTCTCAGTCCTATCGTTAGTCACTG
ACGAAAGACAGTGGATACTGTCTGAAACGTCTGACTGTTTCAAAATCTTA
TCCAGTTGCTTGAGTAATTATTTTTGGCGTATCTTATTACCTGGATGTCT
AACCTTCATCAACGTACCTTCAAGTTGATACCCAGTGATTTGTTAACTTT
GTGAAGCTACAAATGAATGTTTGTTTATCTCTACTGTAGTTCCCATCCGA
CTGGACACCAGGGAGGCCTGTCTGGAGATGTCCAACATGCACGTGTTTCT
ACAGGTGGTACCTGATGTGAGCTACC Coding sequence (CDS) from alignment at Sc0000110:615726..624851- >transcript:BL97422_cuf12 ID=transcript:BL97422_cuf12|Name=transcript:BL97422_cuf12|organism=Branchiostoma lanceolatum|type=CDS|length=855bp|location=Sequence derived from alignment at Sc0000110:615726..624851- (Branchiostoma lanceolatum)
GTGGTCAACTTCAGGAATTGCCCAGCTGCCATGGATGTAGCTGTGGACAA
GTTCTCAGTCACAGAGTTCTCCAGTGTTGAACTCGGAGAAGACATGTCTC
TGTCCCTGAAGATGTCCATCATCCTTGTGGGTACCAACAGCAGGCTCTCC
AACATGGCCAGGGATGTGGAGTTCAACAATTATGACATCAGATTCTACCT
GTCTGAAGATGAGCACATCACCGAAGAAGATCTACAACTGCCCTATGATG
TGGACAGCATCCACCAATTGAAGGAAGGGATCTCAGCTCCATTGGTTGAA
CATGATGCCAAGGTCGTGACCTATGACCTGAGTTCAGGCATCAACAACCC
CACCATCACTGTGCCCATGAACCCTGACCTTTGTGGCAAAATTGTATACA
TTGGAGTTGAAGTCGTGGCACTGACATTCACGGATGCATACCTGAAGAAC
AACAAAGCTGTGCAAAGGGTCACAGTGTTATGCACAGAGGAGAAGCTTGT
ACCTCACAAGGTGAACTTTGACCTGAGCAATGCCAAGGTGTGGCCAGGCC
TGGACTATCAACTCAACATGGACTTTCTGCTGATGAACCTGGGGTTCCAC
ACTGTGCCTGCTGGGGGATCAGCCTACAGCATACGTGTGTTCCTGTCTGC
TGACTCTGTGTTTGATGACAGTGAGGACACGCCTTTGGTTGTTGATTTTG
GTGACAGTTTGGGACAGACAAGTCAGAAAATCCTGGCAAACCAGCATGTG
GACTTCATGGGACTCTCAGTTCCCATCCGACTGGACACCAGGGAGGCCTG
TCTGGAGATGTCCAACATGCACGTGTTTCTACAGGTGGTACCTGATGTGA
GCTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000110 | genome | Sc0000110:615726..624851 - |
Properties
| Property Name | Value |
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| Transcript id | BL97422_cuf12 |
| Biotype | protein_coding |
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