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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97425_cuf3 >transcript:BL97425_cuf3-protein ID=transcript:BL97425_cuf3-protein|Name=transcript:BL97425_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=348bp
MTMFGVWAAVLLVTVLRGTGAQEPAGYEGCYVDQADRNFQNEKWDGQLTN
DRCVSHCRETGYPYAATEFTFQCFCGTEAEYNNLPAAVADSDCSTDCTGN
SGEKCGGAWRMSVYAVVALKNEIRLVGGDRDEEGRVEVRTYNTKDWGTVC
SDGFDMDDARVACNMLGLGDPEYIRDTSYFGQGIGDIKMADLGCGGHESS
LFDCSYDTQGTHSCSHGDDVGLVCEGVLSVGAIIGIVIGVLAVIIIAVTI
ACICCQKNKTPGHVVTAPASVGGVPAPVGGAPVMVHTSNAMMYPQAGNAT
FMQQGVAFPMQPVQTVAYGQPAQPVAQFPPPPNYDQVAKPAVGQPYPQ Run BLAST on NCBI mRNA from alignment at Sc0000055:1092974..1099840- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97425_cuf3 ID=transcript:BL97425_cuf3|Name=transcript:BL97425_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=6867bp|location=Sequence derived from alignment at Sc0000055:1092974..1099840- (Branchiostoma lanceolatum)
ACGGTACAATTACAAAATGTACATACAATAGATGTATTGTGTGTCTCCCA
GTGCCGAATACTTGTGTATTGGTAAATTTGTAAAGAAACACGGTTATCGT
TTCAAGTTGTGAACGGTCAGACCCCAATGAATACAGGACATTTGAGAAGA
CCAGTCGTCAGGTGACTTGAGGTCTCGAACTTACCACAGATCCTTTTTTG
TAAACAAGCAGTTGTAGCTTTTACTTCTTCCTTCTTACTGTGGGGTTCGG
TAAGCATCGGATTTTAGTATCATTGTGCCACAAGACATGACCATGTTTGG
CGTGTGGGCGGCGGTTCTTTTAGTGACAGTTCTCCGGGGGACAGGTGCGC
AAGGTGAGTAGCCGCCATCTTTGTTCGGACGAATTACGTCAACATACTTT
GTCTTGGTTGTTTGTGTTTTAACTAGGGCAAGTAAAAGTATTTCGTCCTC
TAAATCATTCTTGAGTGATTTTTGAACCCGTGTTTGGTACCTACACGACA
GGAAGTCTTATAAGTAGCGTGCTACATGTTCGAATATGACATGTTTATAC
TTCTTACTATACTATGCATACGGTTTGTTTGTGCATAAATACAACAGAGG
TATTGTTCTGTACATGGTGGCACTGGGGATCTGTAGCATATTTCCTACCT
TATGCATGGCCGAGGGAAATGTATACAAGTATGTCACCTCAATGTACGGA
TCCTGAATCTTTTACGTCATCTTTGGACGTGCCATTGTCTGATACGTCGT
TTGAAATTATGCTAACCACCGTCTATTGTAACCTTATCTGGCTCAAGCGC
TGTAAAACAATCAAGACACAGTGATACTTGCTCTATGTGGTCTTTCCTAA
AAATATTACTTTAAACTGGGGAAAATTAATAGTTTAGTGATCTGAGAAGC
CCATTTTCCAAATATTTGTGTTTCTATGATATTTGCGTCCTCAGATCCAC
CTTCTTTGTCATGATCATTCCGTTTAAAGTGTAATGTATACCCAAGAACA
CAGGTTTTGTCCATTCTACTACCCCTGAACGATCCATGATAAAGTGGCGA
TCTTCTTCAATCTCATTTCGGACAGAGATTATGTCCAAATTCTGTCCGAG
ATTGAAGATTGTCACTCCTTCACCATGTATTGTTCACAATATGAATTTTA
AACGTAATGCTCACAGCTGTTCACAGTTCTTACCTCTTGCTCAAAAGATA
CATTTCATCCTATAAATAAATGAATTTGATTATATTCTAATAGTCGAAAT
GCCTTAGTGCGTACAGATAGGTAAATACAATATTTGGTGTACATGTATCT
AACTGTCTTGAAATACCTTAAAATCAGTAGTACAAACGATACGTTAATCT
CAACATATCGATTTATTCATGTACTTGTACGCATCTTAGTTCATTTGTAT
CCACTTGTTTGTTGTATGTCTGGTTGTAGACCCAATAAAAATCGGCGTTT
CTGGGTCAATGAAAATTTTCATGTATTGAATTTAGACGAATATACATTGT
ATTAAACCAACGTCAACATCGTCTATCAAAGAATTCGTTTACACTAGCCC
GAACGTGTAAAACGTCCCTTTTCTTTGTTAATACTCACCCACATCGTACG
GTACATGACAAGCCAAAAATACTTACTCAAGGAACTGAATAATATTTTGA
AACAGTCAGACGTTTCAGACAGCATCCGTCAGTGACTAAGGATAGGACGG
GAAAACCAGGTTTTATACCAAAACCCTGAATAGATATGTTAATGTGGTTA
AGCCAATTTAGGACGTCTTGCAATTGGCGTAGTCTTCAAAAGAAGCTTAA
TTCAAGACAAGGTTGTATGCTGATAGTTCCACTAGTTACTGTTGTTTTTG
TAAGGTAACTAAATGTTGTTCGTCCGGGGGTTGGGGTAGTGCATTTTCCA
AGTGCCTGAAAGTTCAACGCGTAGACCTNGCATTATCCCAAGTACCGGAA
AGTTCAACGCGTAGACCCCCTTTCCTGTTGAGGGTGGGATTATACATCCT
CTCATATATTGCTTTTCTGACGATTGTTTTCTACCCCAGAGCCTGCAGGG
TACGAAGGTTGTTATGTCGACCAGGCAGACCGAAACTTCCAGAACGAAAA
GTGGGACGGACAGCTGACCAACGATCGGTGTGTGTCCCACTGTAGGGAAA
CCGGATACCCCTATGCAGGTAACGTTAAGGCCGCAGAATAGTAGTTCGGG
TATGAACTAGNCCCCGTGGACAATAGTAGTTCGGGTATGAAGTAGTGCGT
CACATTACTTGAAAAGGCCATAGTTTTTCTTCTGTGCACGTTAGCGAGGC
TGGAACTGTGGTGAATGGCAGAGGAATACGTCAGTTTTGAGACAGTACGA
GTTTGATATCTATGTTTGTTCGGTCGGGTTGGATTCGCGCCTGGATATTG
TTACCGCTCGACTACAGTAAGTCGCCTGCAGTACGGTGACCTCCGCTGGG
GGTCATACCAAAGCGGCTTCTAAANAAAGAGAACGAGCCGGCAAATTTAA
CCTCATTTTGCAGATATTTTGTAGATTGAACCTTGAAGTCAAACATATAA
AAATCTGGCACCCTAACTGTGCACCTTTCTATAAATTTTCAAGCGTCGAA
GCTTCTCACCTTGGGATCCTTAACTATATAAATCCCTATAGGAGAAATAC
TGTGGTCTGCAACCTTAACAGTTGTGAACAAAGTGTACGACACAGTGTAC
GACACAAACACATGCACGTAATACATCAAGGACAAGGCAGATGTTTGGGT
TTTGTGTATCTCATTTCGAATGGCAAGGTGGTCTTGTGGTTAGATCTGTA
CAAAAATGTGTGTACCGAACAAACCTAGGTGTGTTACGACTAAATGCGGT
TTACTGGTTATGGCAAACAAACAAACAAACAAACAAAAAATAAATAAAAT
AAACACACATTAAAAAAAAATAGAAAAACGTTTAGTGTATGTTTTGGACA
CCCCCACCCCCGGAAAAAAGAAATGTTTAGTTCATTTGCTATTGGAGATT
GACTTCGAGTCATACTTTAATTTCAATGAATCGTTTTGTTTTTCCACCAG
CGACTGAGTTCACATTCCAGTGTTTCTGTGGTACCGAAGCCGAGTACAAC
AACCTGCCTGCTGCCGTGGCCGACTCGGATTGTAGTACAGATTGTACTGG
CAACAGTGGGGAGAAATGTGGAGGGGCATGGAGGATGTCCGTGTACGCAG
TAGTAGGTGCGTATAAGGCGCCCTATGACACTTGTGCGTATATTCAAGTG
CGTATGAATTGCGCATCAACATTTCTTTGTTTAAGGAAAGTTTGCGGGGA
AGACGTTTTTTTCTACATTGACCCATCGCTGTGCAGCCTAGTTATCGGAC
CAAAGAAATGACTTCTTCGGCTGCAAACTTAACCTAAAACAAAAACATGT
CAATACGCAACTCATACGGACTTGTATATACGCACACGTGTAAAGGGGGC
TTTAGAACGTTAACACTTTCACCGTGGAGGCTATGTTTTTGCCTGTGTTT
GTTTCTTTGCTGGTTATCTTGTTGGTTTGATTGTAGGGCAACATGAAACC
TTTAACAGTGTTTTCGTGGGTAGGTTTCTGCCAAAAAAAATGTCAATACG
CAACTCATACGGACGCACAAGTTCGAGCGGGCCTTAAGGTTTAAGTAATT
TATGTTCCCGGAATGATTACAACGCTTCTTAGCCATTTTCAATTATGGAA
GATATCCCTGTAGCAGCTGCATGTCACATTGCAGTGACAAGATTTTCAAA
GTGACAAAGTGAATGAAGAAGCCACAACGCACAGCTAGCTCTGATGATGA
TTAGAAGAAGACGTACAGCCCAGATACGCAGAGACAATGTAGATCCGAGA
TCTGAGAATTCCAGTGTATATGAAACGTAAAAAATTCTTCTTCTTACAAT
GCATGCAGCGCTGAAAAACGAGATCCGGTTGGTTGGCGGAGACAGAGACG
AGGAAGGGCGTGTGGAGGTCCGTACATACAACACCAAAGACTGGGGAACC
GTCTGTAGCGACGGTTTTGACATGGACGACGCCAGAGTGGCCTGCAACAT
GCTGGGCCTGGGCGATCCTGAGTACATCCGGGACACCAGCTACTTCGGAC
AAGGTAATTCTAATGTCCAAGCAGATGTGGACAGGCAATATCGCCTTTTT
TATCGTAACGTTTCTAAACAATCGTAACGCGTCTCGTGGAGCACCGGGCC
TTCCTACTAAGCCCTCCGCTGAACAAGGAGCTTGAAAGACTTTGCCTCTT
ATGAAGAAGTGTATGTTGTACGTTTTGTGTGTTTTGTTGTCTTTGCAAAG
CATACTTTAACATCATGTGTGGGGTCGTGTGGCGCAACGACAGAGCGTTC
GGCTCAGAACCAAGAGGTCCCGAGTTCGAATCCTGTCATGTCACCGATCT
TGTGCACTTTACACGACTTTCCTCACTCCACCCAGGTGTAAATGGGTACC
TGACTTCGGTTGGGGAAGGTCGTAGTGAGGTCACCTGGTGGCGCCGAATG
GCAGCCGCCCAGACCCTGGTGACAATTCCAGATAATGCAAGTGTGGATAA
GATATGTATATGTATATGATGTGTATTATGTGAAACCTGTAAACCATGCA
TCAATTGAGCTCTTGAAAGGCTGCCATTACGGGTAATTTCTGACCAATAA
AAGAACCCCCAAAAAAATTCTTTATCATGGATCATATTCAATTTATAAAG
CTAAAGTCATAGGTCATACAAATACAATGTAAGTTTTTCGATGATCTCCA
TCTGTCATTTGTATTCCTAGATAAGATGTCCCAAAATATAGACAGGCTCC
TTTGATGTAATATTTCCTCATGCTGGATTTTGATGAATGTTACAGGCATA
GGAGATATCAAGATGGCCGACCTGGGGTGTGGTGGGCACGAGAGCAGCCT
GTTCGACTGCAGCTACGATACCCAGGGTACTCACAGCTGTAGTCACGGTG
ACGACGTCGGTCTCGTCTGCGAAGGAGGTAAGATGCGTTGACTCATTCTC
CTACGCAGAGCCTCGTCCCATGTAATGTACCCTGGGAGGCCTCTGCTAAA
CCGGGTTGAGGATTTCACGTTTGTTGGCTTGGCCTCTAACCAGCTGTCAG
CCAATCAGAGAATCGCCTAATTTTATTATTTTGCTAAAACCGATTCTCTG
ATTGGCTAAAAGCTGGTTAGAGGTCACGCGCGCAACTGTGAAAACCTCAG
ACTGGTTTATCAGAGCCTTCCCACTAACCAGACTGAGAGGGGGTCTTTTA
AATAATAATCTTATTTGCAAGTTCTTGCCCGAGGGCTAATTGCAACATGA
AACAATACATAGCAAGGGTATACTGTGCAGATAGTGCGAGTTAACAATGT
TGACTAGTAGAACACATGGCTATTCTAAAAACTACTACGGAATGCAATCT
ACGCTTTTTGGGTTTGACTCCATTTATACTCCTTTGTATACCAATCGATG
TGCCATACATTTGTAATTCTTTTCTAAAACACAAAAGATGTTAACACAGA
TGTTGCTTGTAATTGTGTTTTTGACAGTCCTGAGTGTCGGAGCCATCATT
GGGATTGTCATCGGCGTGTTGGCCGTCATCATCATCGCGGTGACCATTGC
CTGCATCTGCTGTCAGAAGAACAAGACACCTGGACATGTGGTCACTGCGC
CTGCGTCGGTAGGGGGCGTCCCTGCACCGGTAGGGGGCGCCCCTGTCATG
GTCCACACCTCCAACGCCATGATGTACCCTCAGGCTGGCAACGCTACGTT
CATGCAGCAGGGTGTGGCGTTCCCCATGCAGCCTGTACAGACCGTGGCTT
ACGGACAACCCGCCCAGCCTGTTGCACAGTTCCCGCCCCCTCCCAACTAC
GACCAGGTGGCGAAGCCAGCCGTTGGTCAGCCCTACCCCCAGTAGACTAT
GCCCTGTATGTTCCTACGACGTATAGACATATATTCCGACACACCAGTAT
GCTAGGGTTAGGGTAAGGGTATTCTTCTATAGCATAGCTGAATCCGCGTC
GTAGAAACTCCCTATCATATTCCCGACTCGAATTCACGAAGGATGTACAA
TGTATACATGGGTTCGGCTCTGCTATAAGGAGAATGGCTAAGGGGAGTAG
GAACATACTAGGGTTGTTGCCCTATGCCGAAGCCACGTAAATCAATTATG
TATTGTATACAATACATTAAATTCTGCCATATATATATATATGCATGCTG
TTTCTGCAGTGAAGTATTGCTGATAAGTGAACATGAAAGTTGCGGAATGT
GAAAGTTACAGTGCTGCTTATTGTATATTCAAAGGGTTGACAACTTACAT
TGTACAGTTTTAAAAGTCTAAAAAAGTATCTACTCAGATATTATGTTTAT
TATGGCATTGCGCCTTATGTTTGTATTTGTCTAAATAGATTGCATGTGAG
CCGGGTGCTTTCTCAACTCAAATTCTCCACATTGTCACTTCTATATGTTT
TAAGATTGGATAAGGAGGGTATATATGATATATTATGTTGATGTACATGT
AATACAAGTTGAGTTTGGATTTTCAACTTTTTCGACTTATTTGTGAGAAT
CATGACCTCATGCCTCCATACAGTCTATGTTAAGGGCATGTGACTTTGTC
AATAATTATTTTGTGTGCACGTGACCATATTGTAAATACTAACAAAACAG
GTTGTCGTACATCGATTTTGACTTATTTGTGTGGTAATACTTCAACTTTT
CTACACTGCGTATCTATATGGTTGGCCGTTGATATTGCCATCTAATAAAA
GACTTTTGATATGTTGTAAAGAATGTGGACTTTGTTTGCCGTTCGAACTA
GAGGTAGCAAACTGCCCTGGGAACAAGCTTTGCAAAGTGAGCTGAGGACG
AGATCGATGTGTTCTAG Coding sequence (CDS) from alignment at Sc0000055:1092974..1099840- >transcript:BL97425_cuf3 ID=transcript:BL97425_cuf3|Name=transcript:BL97425_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1047bp|location=Sequence derived from alignment at Sc0000055:1092974..1099840- (Branchiostoma lanceolatum)
ATGACCATGTTTGGCGTGTGGGCGGCGGTTCTTTTAGTGACAGTTCTCCG
GGGGACAGGTGCGCAAGAGCCTGCAGGGTACGAAGGTTGTTATGTCGACC
AGGCAGACCGAAACTTCCAGAACGAAAAGTGGGACGGACAGCTGACCAAC
GATCGGTGTGTGTCCCACTGTAGGGAAACCGGATACCCCTATGCAGCGAC
TGAGTTCACATTCCAGTGTTTCTGTGGTACCGAAGCCGAGTACAACAACC
TGCCTGCTGCCGTGGCCGACTCGGATTGTAGTACAGATTGTACTGGCAAC
AGTGGGGAGAAATGTGGAGGGGCATGGAGGATGTCCGTGTACGCAGTAGT
AGCGCTGAAAAACGAGATCCGGTTGGTTGGCGGAGACAGAGACGAGGAAG
GGCGTGTGGAGGTCCGTACATACAACACCAAAGACTGGGGAACCGTCTGT
AGCGACGGTTTTGACATGGACGACGCCAGAGTGGCCTGCAACATGCTGGG
CCTGGGCGATCCTGAGTACATCCGGGACACCAGCTACTTCGGACAAGGCA
TAGGAGATATCAAGATGGCCGACCTGGGGTGTGGTGGGCACGAGAGCAGC
CTGTTCGACTGCAGCTACGATACCCAGGGTACTCACAGCTGTAGTCACGG
TGACGACGTCGGTCTCGTCTGCGAAGGAGTCCTGAGTGTCGGAGCCATCA
TTGGGATTGTCATCGGCGTGTTGGCCGTCATCATCATCGCGGTGACCATT
GCCTGCATCTGCTGTCAGAAGAACAAGACACCTGGACATGTGGTCACTGC
GCCTGCGTCGGTAGGGGGCGTCCCTGCACCGGTAGGGGGCGCCCCTGTCA
TGGTCCACACCTCCAACGCCATGATGTACCCTCAGGCTGGCAACGCTACG
TTCATGCAGCAGGGTGTGGCGTTCCCCATGCAGCCTGTACAGACCGTGGC
TTACGGACAACCCGCCCAGCCTGTTGCACAGTTCCCGCCCCCTCCCAACT
ACGACCAGGTGGCGAAGCCAGCCGTTGGTCAGCCCTACCCCCAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000055 | genome | Sc0000055:1092974..1099840 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97425_cuf3 |
| Biotype | protein_coding |
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