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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97433_cuf3 >transcript:BL97433_cuf3-protein ID=transcript:BL97433_cuf3-protein|Name=transcript:BL97433_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=508bp
ESTAAPNKRDLSTNNLIEVLEELLREEGDDNVDNAVTPMEEDVDNAVTSI
EEDAETAVTSIEEDGGHAVTSVEEDEPSVVSGDLKDNDETFLETRGGGGT
YSRNVQLPPQCAGSSTNIALGRPAQQSSLYPGGVPGRAVDGNTNTQWSGN
SCTHTQNDNQPWWRVDLGSSKCVDRVVVTNRRDCCSERLQGFKVYVGDNP
NVAENPTCGGAQSVSGKTTITVDCGGRTGRYVGIALPGRQYLTLCEVQVF
GGDSGYIQRGGSLYKVFNQLKTYEAAKQTCAAHGGHLADVKTQALQDFLV
SKIRQVDANRDYWIGLNDVTVENTWTWSDGTPVSDCDFTNWAPGEPNNAG
SGQGQDCGQLWNPRGYRWDDDTCGNQKYFICQIGPGEENSCGRSGGYVSL
GCWRDTGNRAIPTLEGSDPRLDGPYQNRQDAIRKCYQVAKDRGFSYFAVQ
NRGWCASSPIAGETYQKYGRSSSCGNDGEGGPWGNEVYHITGESHCDPFL
NLKVITPI Run BLAST on NCBI mRNA from alignment at Sc0000061:1102041..1110490- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97433_cuf3 ID=transcript:BL97433_cuf3|Name=transcript:BL97433_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=8450bp|location=Sequence derived from alignment at Sc0000061:1102041..1110490- (Branchiostoma lanceolatum)
CAGAGTCGACAGCTGCTCCCAACAAGCGGGATTTGTCAACTAACAATCTG
ATCGAAGTCCTGGAAGGTAACGTTTCACTTGTTGTTGTTTTTAACGAGTT
TGCTCAAGAGATTACTACTAGGGATAAGGCCCCAAATTCCACGAGACGGC
GATCGCGCCGGGACCTAAATTGGACTTGAGCAACCATTCTTTCATGGTTG
GAATATCATACAAAATGTTAACATATGACTGAAAAGACTATATATCATGC
AAAGCGTAAAAAGATTCGTTTTTATTTATGAAATTTGTTTAGCTAACGTT
ATCTGTCAAATCTTACGTCGCAGCGAGATCGCCGCCCTAGTGGAGTGGGA
GTGTGTCGTTCTGAATCCGTTATACAATTCCTGCCAGAAATCAGACCATA
TTTTTTTTCTGTGACGATTAGTGCTGGACAGTAACTGCAGTGACAATCTA
AGAAATTTTTGTGGAATCGTTGGTTTAACGATTTTTTTTTCTAAATCGCC
CCCACAGAACTTCTTCGGGAGGAGGGCGACGACAATGTAGACAATGCTGT
GACGCCCATGGAAGAGGATGTAGACAACGCCGTAACATCTATAGAAGAGG
ATGCAGAAACTGCCGTGACATCTATAGAAGAGGATGCAGAAACTGCCGTG
ACATCTATAGAAGAGGATGCAGAAACTGCAGTGACATCTATAGAAGAGGA
TGCAGAAACTGCCGTGACATCTATAGAAGAGGATGGCGGCCATGCTGTGA
CATCTGTAGAAGAGGTATCCACATTTTCTTTACATAATGTAACTGACTGC
TTTGTTATTAGAAAAAAAACATACTCATGATTAGCCCCACTCGATTGTAA
CACGATATCAAAGGTTTTAGTAATTCGGATGTTAGATTTTATTCTATATT
TCTATTTTGTACTATGTTTATTGGATTGCTGTTGCCATACCGTGTGCGAT
TGTCGTGCAATAAAGTTTTTTTCCATTTTTTATAACGGTTCCATGTGACA
AGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGATTGGTTGGTTGGTTG
GTTGGTTGGTTGGTTGATTGGTTGGTTGGTTGGTTGATTGGTTCGTTCGT
TCGTTCGTTCGTTCGTTCGTTCGTTCAGACCCTCGTAGTGCCTAGTGGCG
CATAACGCAGCAAGATCCATTGCTGTTGTATTAGCAGCAGGGTATATTTT
TACAGGGAGGGGTTGCTATCCTTTCTTTTGATAAGGTTGGAACACTTGAC
AAAAAACTAGTTTTAGTGAGCTTCCTCCTGCTTCATTTCCTATGTGTAAA
CCGCCATGGCTGAGATGCGACAACCATTACGTGTCGGCAGACAGATCTAC
GCCTGGCGTTTGTTTGCCGCCTCCAGGGGTGTTCTGCATGAATGTCATTT
AGAGACAGCTGAACGTACAGTTGGTCGCTTTAGGCTATGACACTCTATAC
AAATAACCTATACCGGACATCCTAAATAGATATAGCATAAATGCACCTTC
GGTGTAGTTACAAATGCCAAAATGACATTTTTGATGGTTGCCGTGTTCTA
CTGGAACATTGAAAGACATAGTATAGACAATAGAAATCATGACATATGGC
ATATCGTATTGAATTGGACAAAATGTTATTTTTCTTATTCAAGCGCACAT
GTGTGGGTGTAGTTTCCATGGATTCAACGAGAGACCTAAGACATGACATC
AATCTTAAACAAGATTCAGCTGTTGATTAGGATTTTCCCTGTTGTATAGA
GGAAAAGTCACACCGCTTATCATACATGTGTATATTATACCGTACTCGAC
GCGTCTATCCAAGAGCGACACGAACAGGAGAGAAGAATAACGCGTCACAG
TTAGGGGGGAGGGGGCGATCCCCGCCGTTTACATACAAACTGATCTGTCC
TTGGTGCTGGATATCCTTCACTTGGCTCTGTGTTCCTTGTGGTGAAACAT
GGAGAAGCAATGAAATAAATCTATAACGTGTTCCTATTGAACCACCATAA
CTTGCTTTTAGTGCATGTGTAGGGACGAAATTCCACATGTAAAAAGCCCC
AGAAATATCTGTAGTTTTTAATCAGATTCCCTCACGCTTGCTTTCCTAGA
TAGCTGTGGTATAGGGATTTTGCTGAAAATAATTTTGAGAGGTGAGTACT
CCACATGTACGTACATACGGTGTGTTTAGTTAACGCCACCTTGTCGTCCC
AAGCAGTCGAAAGTCTTGAGTAAATTGGAGGCGGTACTCACGAAAACCTA
TGTTCGCGGACAACGTCACACGGTGCGGGGTTCATATCTTACATGTACGT
ATGTCGCTCTGAATATGGACCACCATTACCAAGCGTTAAACCACAATCTT
GGAGTCATAATATACTTTAGATGTTAACAGACTGTGACGAAGATGAAGTT
ACATTTTCTGCGTAATGTCATGAGATTTTCACCAGCCTTGGTCCGTTATC
GACACTTGTTTCGAGCATAGGCAGAAAGGTGTCATGGACATCATCCATCC
GCTTGTTCAGTCCTCCTCCCGTTCGCTTATTCATTACAATCTAGCACTCT
GATAAGTCTGGGCTGAAACACCGTCGTCTAGAATCACAGACATGTAGCTA
GATTCATAAAAGCCAGGACCTTCCCAATCAAGAAGAACGGTTTGCATCTC
TTAAATGGTGGGACGGGCAGAACCATGTTGACCACGATTTAGCTGCATGT
GCCCACATGTGGGTGGTCCGGTGGTATAACTTCCCTCAGGTAGTGGGTAC
ATCTCCCGTGGATCAGGCTTTAGGTACTATCTTTGTTAGCAAGAATAAAA
CAGTTACAGTTACTTATATACATGTATATTACATACACTGTTTGATGTTT
CTATTGCTTCAGGAAGAGTAGCAAGGCAGTTAAGAATAGTTCTCTGCGAC
TTTCAAAGTGATTCTAGACTTTGTGGGTGATGTCATATGCATTTCAAATA
TTTTCGAGAATTCACGGAGAATTTTTTTCTGTCCTTTTTGTGCAGTATCA
CTTCTTACAAACCAGATACAGTCTTTTTCTTGTTATTTTCATATTCTATA
GGTTCTCAGCTTTTCAGGAATGTATAGCTTTACCTATCTAGCATTAATAT
TAGGTACTTGACAGCCCCGAAACGATTCCTAGGTGGGCGCACCTGAAGCC
CAAAAATTTTAGTTACGAATCCTGTATGCCCGTGAAACTTTATCCCGTCT
CTCTCTAAGAGTTAACTACCAGCTTTAACCAGCCAAGCCGCGCTTGCTTC
TGTGTAAACCGTCGGCGTCACGGCTGAGATGTGACAAACAATACATGTTG
ACAGGCGGATCTGTACATGTGGTTTGGTATACCCGTCTGAACCGCGGTGT
ACATGTACATGTTCTAATAGACCAACAAAGAATGCCATTGGTGACAACAA
CTGCTAGTTTCACCAGCCAGATCACATTTCACACGTTTGCCCCTATGTGT
ACACCATAATGCTATGGGCGAGATGTGACAAATGTCATATGTTAACAGAC
AGCTCTAAGATCTACGCGAGGTGTGACTGAGCCTACCTCCGGGGTGTTCT
GTTTGACCGACAAAGAATGCCATTGGAGGCGGCTTTTTATTAAAACCCGT
CGCTTTGGGCTATTAGCGAAGTTTCGCGTTTCCCTACAATAGCCTACACC
AGCCATATAGAGTAGATATAGCATAAATGGAAGGTTTCATGGGGGAAAGT
GTACCTTGACTATTACTGTGTTGACAGACACTCGAGAGAGTATGGCTAGT
CTACATGGTTTCATCAGTTCTGTTGTAGCCGAGCTTTCCTCGCCCTCCTC
TTGGCCTCAGCTGCAGCTCTTTTTTCAGCTTCGAAAGTTGCGGCGTTCTT
GCAGCTCAGCTGACGCCAGGTGCTGCGATCGAAGCAGGGAGCTTCAAAGT
CTGTGGGGTCAATGAGACCTTTCTTTAAGTAATGTTTAAGGGTGTCCTTA
TATCTCTTTCTTTGCCCACCCCTAGGCCGTGTCCCTTGATCCAGTTGTCC
AAACAGGGCCTGTTTGGGGAGCCGGTTGTCTGGCATCTGGACACAGTGAC
CAGTACATCGTAGTTGGCTGCGTATGACGAGTACATCTATACTACAGGAG
CCAGCTTCAGCTAGTACACTAGGTAGTCTGACCAGGAGATGTTCAGAATA
CGGTGTAGTGAGCGTTGGTGAAACTGTTCGAGAGCCTATTACTGTAGGCT
ACTATATGTCATTTTCGATGGTTGCAGAGGTCCACGGCACTAGCGTGTTG
AAAGGCACAATGATTAGACAAAATACTATACTTCCTACACAAGCGCACAT
GTACGGGTGTCGTTTCTGTGGATGCGACATCAAGAGGCACCTAAGATATG
ATAGGCATCGATCTTTAGACAAGATTCAGAAGCTTTCTAATATCAGTATT
TTCCCTGTTTTACACGGCAAAAGGTAGCACATACCCGTTTGTTACCGTAC
TCGAGGAGACAAGGGTGACACGTTACTGGGTAGGCGGGGCGGGAGGGGGC
CAACCCGGGCCCTATCCATGTACAAACAAACTGATCTGTCCTTGGTGCTG
AATATCCTTCACTTGGCTCTGTGCTCCTTGCGGTGAGGCAAGGAGGGGCA
CTGAAATGAATCTATAACTTATTCCTATTGAACTAAGGCAAAAGCATTTA
ATGCATGTACATACTCCGTAAAGGCTAAGACATCAGAATTGGAAATTTCT
CAGATATCTGACAGTAGTTTCCCTTGCCCATATTACTTTCATACACTATA
AATGCAGTCTTGTAGTGAGACTCTAGAGAAAGTATCTCTTTGTTGTCTCC
TAGGATGAGCCGTCGGTTGTATCAGGAGATCTGAAAGACAACGATGAGAC
GTTCTTAGAAACACGTGGAGGGGGTGAGTCCGATTGATTTATAAGTAGTG
ATTAACTACGACGGCTCCGTGTATAAGGGAGCGTCAGGTGTAAGCTTCAG
ACCTCTGCACGTATACCCGAAGTGCTTGGCTGAAAAACGAGAGCCGTAGG
AAAACCGCATTGCACGACTACTAGATACTTGAAAAATCATCATGTTTCAC
CTCTAATGGGGATTACTGCTTTACCTGTGCCGATACGTGTGATGTAAATA
GTGTATTGGGTTAAGATGCGCAAAGCTTTAATAGTTTTTGAAATGCATGA
TACACACGTATCTTATCATAGTCGCGTAGAGTTTAGAGGCAACATATGTG
TACCTTCTCAATTCTCAATTCAATTCTTTATTAAAATAACAACCTTGCAG
ACATACAAACGTTAGCCTGGATGGCGTTGATATTTACAATGAACACATAT
ATGCAAACACATTCCACACATAAACACACACACATATTCAGTAGCTGTGG
ATCTGGAGGGAGCGAGGCTGTGTAGGGGGTGGTTATGTTGAAGCATTTGT
CCTGAGAGCTTGACAGTGGCATCCTCAAGCCTAGACTTGAGGATGGGTAG
TTCTGCTACACTTGTTTCAACATTTAAGTTATGACTTATATTGTCTTATA
ATGTTTGTCTTTGTGTCCATAGGTGGTACATACAGCCGGAATGTACAACT
GCCTCCACAATGTGGTATGTGGCTGGTACTTTTGTTGTCTTCTTTTGCAA
GCAGACACTATCTGCCTTAGAAAATACAGTAACTTCACGCATTTTTTCCT
TGTCTCATAACTAGAACGACCGGTGCCTCATCCCTCCGCAATGCTGTTTT
ACTTTAAAAGAATACAATTATCTGCGCTAATCGTCTTTCAGGCTTTTTAC
AGAAAAGTCAGTAAAAAAATATTGAAACAGTGACGTTATTTGTTCTGCAG
CTGGTAGCTCTACCAACATTGCCCTAGGCCGCCCGGCGCAACAGTCGAGT
CTCTATCCCGGGGGCGTCCCTGGACGGGCGGTGGACGGGAACACAAATAC
CCAGTGGTCAGGAAACTCCTGCACCCACACACAAAACGACAACCAGCCGT
GGTGGCGGGTCGACCTGGGGTCCTCTAAGTGCGTCGATCGCGTCGTCGTC
ACCAACCGCAGGGACTGTTGCTCAGAACGACTCCAGGGCTTCAAGGTACA
AGAGTTCATTACTATTATAAGACCGGTGCCCGAGTCTCTGCATGTATTGC
TTTGTGGGCTGTAGTAAAGAACAAGAGAGGACTCTTGAAAGAGTGTAACG
GAGGGGTTCTCGCGCTGGGTGGAAGACCTGCAATACCAACTCTGAAGGAA
ATACGGGAAACGGATGCAGTTAAACTACTGAAGTAGTTAAAGTAGTTACG
TGTAAAGTTTTTCAGTTGTGATAATGTTTGTGATATCAACATAATACTAG
CTGTTTAGCAAAAGACCATGGGTCTGAGAATGTAAAACATACATACAGGT
GTGTATGTATTGTACTGTACTTCTGCCTGTTGATTTTACAATAAAATTTA
ATTGAATGGAAAGGTGTACGTCGGAGATAACCCGAACGTGGCCGAAAACC
CGACGTGTGGAGGAGCGCAGTCGGTAAGCGGCAAGACGACAATCACCGTG
GACTGCGGCGGTCGCACGGGCCGGTACGTGGGGATAGCTCTGCCGGGCAG
GCAGTACCTCACACTGTGTGAAGTGCAGGTCTTCGGGGGTATGTTCTTTT
CTTTCTTTTTCTACGTGTAGTTTTCCTGATATTATTCTGCGTGGCAATTG
CTGGACAATTCTGACAATGCTAGCTAGCGTCATAAGTAATTAACCCCATG
AAAAATTGAGGTATTGTTTTTGGCGTCTCTGTGTGTTTGCTTGCTTGTTT
GTATTTCAGCACAACTTAAAAACGGCCGGATTGTGGTGATATTTGGTATG
TGGGCAGGTCTTGGGCCCCCTCGGGTGTGTGACCTTGTTTTTGTTGTAGT
GCACTATGTTGAGCTGCTAAATGTTCCAGCGCTGTTTTCCAGGAGATTCC
GGGTACATACAACGAGGTGGTAGTTTGTACAAGGTGTTTAATCAGCTCAA
GACGTACGAAGCTGCCAAGCAGACCTGTGCAGCACATGGCGGCCATCTTG
CCGACGTTAAGACACAGGCGCTGCAGGACTTCCTCGTGTCCAAGATTCGA
CAGGTTGACGCGAACAGAGACTACTGGATCGGACTCAATGATGTGACAGT
AAGTGTCCCACCTGATGAAATATTGTTATCTCTCCTCTCTCTCCACCACT
GAGGTGCAAAAATGGGTACCTGATTTAAGTTGGAGACGTTAAAGGCGGTG
GAAGGATAACAACCCACTACCCATACGGCATCAACAAATAAAAGGCAATG
GGACAACATTTCCACTATCAAGCTTACTGTTTTTCTGTATGTGGCACTGT
TAAAATAGGTTACTAAACTTGAGTGCAGTACAGTGCTGCTTGTCCTTGCC
GTTCCAAAAGCATAATTAAGAAAAAATTATTATGGCTTCAAACACCTTGG
ACAACATCTTGCTTTCGCATTGTTTCCTCTCTTTTCTTGAATAGATTAAC
TAAACTCACCTTAACTCCAGGTATTTAGATAATAAACGTCTGACTGAATT
CCTTTGTGTAGGTTGAGAACACGTGGACCTGGTCAGATGGGACTCCGGTC
AGCGATTGTGACTTCACCAACTGGGCACCGGGAGAGCCTAACAACGCCGG
CTCCGGTCAGGGCCAGGACTGCGGACAACTCTGGAATCCTCGAGGTTACA
GATGGGACGACGACACCTGTGGAAATCAGAAATACTTCATCTGTCAGATA
GGTACTTTGTACCACATTCAGACTTTCGTAGTTATATTGGGAACTTGTTT
TGATGATAAACTTGTGGATTTCCTCCTTCCAGATTCATCTTAATTCTTGC
CATGATTTACACATTTCCAGGTCCTGGCGAAGAGAACTCCTGTGGACGAT
CAGGCGGTAGGATGAATGTTACATGTATTTATTACCTTTCAACCCATTAA
TGATGAAGAATGACACGACTTAATGGACTACTTTATTAAGATACATCCGA
TTTTCTATCTCATATTAAATATATCTGCGTCTCCAGACTGTGTCCTTTCG
AATTGAATAAACAGTACCTAGGGCTCTCTCGAAAACATCCGTTTCACATG
ATAAATCTAAAACCACTACATGGTTCTGTTCATTTTATAAGGATACGTTA
GCCTTGGCTGTTGGCGAGACACCGGTAACAGAGCCATCCCGACGCTGGAG
GGGTCCGACCCACGTCTGGACGGGCCTTACCAAAACCGACAGGACGCCAT
CCGTAAGTGCTACCAAGTCGCCAAGGACAGAGGATTCTCCTACTTCGCGG
TGCAAAACAGAGGTTGGTGCGCCTCTTCTCCCATCGCCGGAGAAACCTAC
CAGAAGTACGGCCGTTCTTCATCCTGTGGTAACGACGGCGAAGGAGGGCC
TTGGGGCAATGAGGTGTACCACATCACAGGTGAGAGCCACTGTGACCCGT
TTCTCAATCTCAAGGTAATAACCCCCATATGACCCCATCAGGGGCAAAGT
Coding sequence (CDS) from alignment at Sc0000061:1102041..1110490- >transcript:BL97433_cuf3 ID=transcript:BL97433_cuf3|Name=transcript:BL97433_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1527bp|location=Sequence derived from alignment at Sc0000061:1102041..1110490- (Branchiostoma lanceolatum)
GAGTCGACAGCTGCTCCCAACAAGCGGGATTTGTCAACTAACAATCTGAT
CGAAGTCCTGGAAGAACTTCTTCGGGAGGAGGGCGACGACAATGTAGACA
ATGCTGTGACGCCCATGGAAGAGGATGTAGACAACGCCGTAACATCTATA
GAAGAGGATGCAGAAACTGCCGTGACATCTATAGAAGAGGATGGCGGCCA
TGCTGTGACATCTGTAGAAGAGGATGAGCCGTCGGTTGTATCAGGAGATC
TGAAAGACAACGATGAGACGTTCTTAGAAACACGTGGAGGGGGTGGTACA
TACAGCCGGAATGTACAACTGCCTCCACAATGTGCTGGTAGCTCTACCAA
CATTGCCCTAGGCCGCCCGGCGCAACAGTCGAGTCTCTATCCCGGGGGCG
TCCCTGGACGGGCGGTGGACGGGAACACAAATACCCAGTGGTCAGGAAAC
TCCTGCACCCACACACAAAACGACAACCAGCCGTGGTGGCGGGTCGACCT
GGGGTCCTCTAAGTGCGTCGATCGCGTCGTCGTCACCAACCGCAGGGACT
GTTGCTCAGAACGACTCCAGGGCTTCAAGGTGTACGTCGGAGATAACCCG
AACGTGGCCGAAAACCCGACGTGTGGAGGAGCGCAGTCGGTAAGCGGCAA
GACGACAATCACCGTGGACTGCGGCGGTCGCACGGGCCGGTACGTGGGGA
TAGCTCTGCCGGGCAGGCAGTACCTCACACTGTGTGAAGTGCAGGTCTTC
GGGGGAGATTCCGGGTACATACAACGAGGTGGTAGTTTGTACAAGGTGTT
TAATCAGCTCAAGACGTACGAAGCTGCCAAGCAGACCTGTGCAGCACATG
GCGGCCATCTTGCCGACGTTAAGACACAGGCGCTGCAGGACTTCCTCGTG
TCCAAGATTCGACAGGTTGACGCGAACAGAGACTACTGGATCGGACTCAA
TGATGTGACAGTTGAGAACACGTGGACCTGGTCAGATGGGACTCCGGTCA
GCGATTGTGACTTCACCAACTGGGCACCGGGAGAGCCTAACAACGCCGGC
TCCGGTCAGGGCCAGGACTGCGGACAACTCTGGAATCCTCGAGGTTACAG
ATGGGACGACGACACCTGTGGAAATCAGAAATACTTCATCTGTCAGATAG
GTCCTGGCGAAGAGAACTCCTGTGGACGATCAGGCGGATACGTTAGCCTT
GGCTGTTGGCGAGACACCGGTAACAGAGCCATCCCGACGCTGGAGGGGTC
CGACCCACGTCTGGACGGGCCTTACCAAAACCGACAGGACGCCATCCGTA
AGTGCTACCAAGTCGCCAAGGACAGAGGATTCTCCTACTTCGCGGTGCAA
AACAGAGGTTGGTGCGCCTCTTCTCCCATCGCCGGAGAAACCTACCAGAA
GTACGGCCGTTCTTCATCCTGTGGTAACGACGGCGAAGGAGGGCCTTGGG
GCAATGAGGTGTACCACATCACAGGTGAGAGCCACTGTGACCCGTTTCTC
AATCTCAAGGTAATAACCCCCATATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000061 | genome | Sc0000061:1102041..1110490 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97433_cuf3 |
| Biotype | protein_coding |
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