transcript:BL97448_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97448_cuf2
Unique Nametranscript:BL97448_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97448_cuf2

>transcript:BL97448_cuf2-protein ID=transcript:BL97448_cuf2-protein|Name=transcript:BL97448_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=399bp
MGDMESTMMSEDQATANYVERSMAVMEKSREKFTYNVKGHLELDDTGHPV
RILNGLRKFREDGKFTASIRSLLEFALAEAEEDLPMYDEDDDDVTLRALN
KCRLNRKFIDLAILTQNRMFAFPCHRAVLASSSPYFHCLLDGGYQESDQS
EIVIGDLSSGVLMKMIEYAYTGKLVVNRYNAQTMFEAGLILQYPVVQEAC
CEFMSDQLEPENVVGILQFAIKFACEDLRTKAFDYIVENLYLVSQSKEFR
FLSKETLLDLIKSDQQFFSSECLYEAAMTWIKFETEARKRFLKDFLESVS
LPQMKRGFFETVVEKESIVSKSSPECYQLIHAAKQKMEKRRENGASREAI
VIFGGSNEGVFVPEIDLYDPRLSHWDSLPSLPRHTEGARHAMAALNNDL
Run BLAST on NCBI

mRNA from alignment at Sc0000010:4799160..4802602-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97448_cuf2 ID=transcript:BL97448_cuf2|Name=transcript:BL97448_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3443bp|location=Sequence derived from alignment at Sc0000010:4799160..4802602- (Branchiostoma lanceolatum)
AAAAGAGTAACCAGAAGCTGTAGCAGTACAGGTTATCACATCTTTTGCCA
TAATCTTTTGATTCCAGGTTACAGTCTACAATACAGCTTAGTTTTAATGA
TTATATTAAATGTGCGTATATCATATATATTGCTTAATAACTGTGTTGAA
AACTGCCATCTTGCAATGCCCGGATGTTAGAAGCAAATTACAAAACATCT
ATAGTTTTTATTCTGTCGATGACGTAACGTTTATACCCTGTGTTTCTTGA
TACATTCTATTAGTTCAAAAACAAAAATCTTATCGTTTTCTATCATTTCT
GTCAATAGTTTTCTTTAACAGAGTTCAATAATTTATTTCTATGGTCATGA
GTTGTAGCCATTCCAAGAAAAACGACACTTTTTCTTCCTTTTCTTTTGGT
TTTAGTGGAACAACGACACACCAGCACCCCTCAATGTGACCCGTCTCTCT
ACAGAACCTGTTCTATAAAAGGAAACCGGCCGGTTACACAAACGGTCGCC
CGGCGCATTGCGTATCGGGAAAGCCTTACGTGATGTTATATTTTGTAGGC
CACAGCTATAGTTCTGTGTCATAACAGATCTACTGCGTGATACAATAAAC
AGTGTTGGTTGACTGACCATCGGGACGACTACTTTCTTCAGGAGTTTCTC
AGCCTAACAAAGCGAAGGGTAAGGCTTCATTATCAATATTTTGTTTTAAT
TCAGGAAACCCCATATGTAAGTGGTACGTAGCCATATTAAACGAAAGTAA
GCTAGGTCTGTCTGTGTCACTGTGATTGGTTTCATAACAACGCCCTCTAC
CGTTGACTGACGGATGTGCAGTTATACTACATGTAAATATCATGATGACA
TAATATATATTACAGTCGTCTTCTATACCATCCCTCCATTAATGAAGAGC
CCAGATGTAACTGTACGTTTGTATTGTGGTACGTGATGCCGCCTCTTCGC
CATATCGAGCAAATTGAAGTTAAATTCCGTGGATCCGTGGGCGGGGGTTC
GATCCCATGGTCGGCCCCAGCTCGGACATGTTATAAGAGATTGCATTCGT
CATTTCTGATGTTTCCAGGCTCTACTATCCATAACCCCTTAGGAAGGCCT
GGTGGAGGCTGTTTGTTTCAATGTATAGTCTATTTCCAGGCTCGTTAGGC
TGCCACCATGGGTGACATGGAGAGCACGATGATGTCCGAGGACCAGGCTA
CCGCCAACTACGTGGAGAGGTCAATGGCAGTGATGGAAAAATCGCGGGAA
AAGTTCACGTATAATGTCAAAGGTCATCTGGAGCTGGACGATACAGGCCA
TCCCGTCAGAATATTAAACGGTAAGAACTTTGAATTTTAGAAGAAAAAAA
TACATCGAAAGCTTCTCCCACAGAGAACCTCGCCCACGACAACACTTGGG
GAGACTATGTAAACCGGGCTGTGGGTTCCATTTTATGGGCCTGGCCTCTA
AATATGGCCAGTTGTCAGGCAAACGGAGAATCGCCTAAATGGTTTCTTTA
GGTTAAGCAGATTCTCTGATAGGCCGGCAGCTGCAGGTTAGAGGCCATAC
CTTCGAAAGTGGAAACCCCAGCCCGGTTTAGCAGAGCGTCCCTAAGGTAC
ATTTTATATGCGCTAGCGCTGCGTAGGAGAATGCACGTAGTGTATATGAT
AAATATAGTACAATACTTGTCTTGAAACTAAATGTTTACTTGCTCGAGCT
CGTGCCTATATCGCTATCGTTGACAGTTTTGAAAGATATGTATTCATAGT
TGTGTGCCTCAGCTCAAATATTTGAAAACTACTTCTACATACACATATTC
CCTCTAGCTTTATTCAGTCATCACTACACGAACTGCTGCAAAAGACAACG
CAGTAGACTTGAGTACACTAGTTGAACACGACTAGTCTTCCAACGGATGT
TATTTCAATGTTTCAAGGAAACGTTACTTGATTTCCTTTTCATCACACTA
TACCTGTCTGTGCCCCAGGTTTACGAAAATTCCGGGAAGACGGCAAGTTC
ACGGCCAGCATCCGGTCTCTCCTGGAGTTCGCGCTGGCGGAGGCCGAAGA
GGACCTCCCGATGTACGACGAAGACGACGATGACGTCACTCTGCGTGCGC
TCAACAAATGTCGTCTGAACAGGAAATTTATCGACCTCGCCATCCTGACG
CAGAACCGGATGTTCGCGTTTCCCTGCCATCGCGCCGTGCTGGCATCCTC
AAGGTCGGTATCTCTGGGGTGTTCCGTATCGCCCGAAGTACCAGCCCGAC
CTCGGGAGGGCTGGGACCGAGGGTGATGCGGAATACACCGTGTTGTGTTT
TATTTATGTCATACCAACCGGAAAAAAATCTGCGAAATGCGCCTGAAGTT
GAGAGAGTTTTGTGTCATTAAACAAGGAGGTTAAATATAACCTCCTTGCA
TTGAACAAAGAAATCGTAACAACATTAACATCGAATCCGACATACGAATT
TTCGACAGCGGCGCACTCGAAATGCATTCTAAATATTCCATGGAAGCCCG
TGTGATACAGTTTAGAACGTAAGTTCATTACAAATTCTTACATTACAAAT
TCTTATGTGATACGGAACATTATCACACGATAGTTTATACCATAGACTGT
TATTGTATTCATTGCTTTGTCATTTTTGCCATACTCATCCAGCCCCTACT
TCCACTGCCTATTGGACGGCGGGTACCAGGAGTCCGACCAATCAGAGATC
GTCATAGGCGACCTGTCGTCAGGTGTGCTGATGAAGATGATAGAGTACGC
GTACACAGGTAAACTCGTGGTCAACAGATACAACGCGCAGACCATGTTCG
AAGCTGGTTTGATCCTCCAGTACCCAGTCGTCCAAGAGGCCTGTTGTGAG
TTCATGTCCGACCAGCTAGAACCAGAAAACGTTGTCGGGATTTTGCAGTT
CGCGATTAAGTTTGCGTGCGAAGATCTGAGGACAAAAGCTTTCGACTACA
TCGTTGAGAACCTGTACCTCGTCTCTCAGAGTAAAGAGTTCAGGTTTCTG
AGTAAGGAGACCCTCCTGGACTTGATAAAAAGTGATCAGCAGTTCTTTTC
CTCGGAATGTCTTTACGAAGCCGCGATGACGTGGATAAAGTTTGAAACCG
AAGCTAGAAAGAGATTCTTGAAAGACTTCTTAGAGAGCGTCAGCCTTCCG
CAAATGAAGAGAGGATTCTTCGAGACGGTTGTAGAAAAGGAGTCGATTGT
CTCCAAGTCCTCGCCTGAATGTTATCAACTAATACACGCCGCGAAACAAA
AGATGGAGAAACGGCGGGAAAACGGGGCTTCCAGGGAAGCGATCGTCATC
TTCGGGGGTTCCAACGAAGGAGTGTTCGTTCCGGAGATAGACTTGTACGA
CCCGCGGCTGAGTCACTGGGACTCTCTCCCCAGTCTTCCCAGACACACGG
AGGGGGCTCGCCACGCCATGGCCGCGCTGAACAACGATCTGTA

Coding sequence (CDS) from alignment at Sc0000010:4799160..4802602-

>transcript:BL97448_cuf2 ID=transcript:BL97448_cuf2|Name=transcript:BL97448_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1197bp|location=Sequence derived from alignment at Sc0000010:4799160..4802602- (Branchiostoma lanceolatum)
ATGGGTGACATGGAGAGCACGATGATGTCCGAGGACCAGGCTACCGCCAA
CTACGTGGAGAGGTCAATGGCAGTGATGGAAAAATCGCGGGAAAAGTTCA
CGTATAATGTCAAAGGTCATCTGGAGCTGGACGATACAGGCCATCCCGTC
AGAATATTAAACGGTTTACGAAAATTCCGGGAAGACGGCAAGTTCACGGC
CAGCATCCGGTCTCTCCTGGAGTTCGCGCTGGCGGAGGCCGAAGAGGACC
TCCCGATGTACGACGAAGACGACGATGACGTCACTCTGCGTGCGCTCAAC
AAATGTCGTCTGAACAGGAAATTTATCGACCTCGCCATCCTGACGCAGAA
CCGGATGTTCGCGTTTCCCTGCCATCGCGCCGTGCTGGCATCCTCAAGCC
CCTACTTCCACTGCCTATTGGACGGCGGGTACCAGGAGTCCGACCAATCA
GAGATCGTCATAGGCGACCTGTCGTCAGGTGTGCTGATGAAGATGATAGA
GTACGCGTACACAGGTAAACTCGTGGTCAACAGATACAACGCGCAGACCA
TGTTCGAAGCTGGTTTGATCCTCCAGTACCCAGTCGTCCAAGAGGCCTGT
TGTGAGTTCATGTCCGACCAGCTAGAACCAGAAAACGTTGTCGGGATTTT
GCAGTTCGCGATTAAGTTTGCGTGCGAAGATCTGAGGACAAAAGCTTTCG
ACTACATCGTTGAGAACCTGTACCTCGTCTCTCAGAGTAAAGAGTTCAGG
TTTCTGAGTAAGGAGACCCTCCTGGACTTGATAAAAAGTGATCAGCAGTT
CTTTTCCTCGGAATGTCTTTACGAAGCCGCGATGACGTGGATAAAGTTTG
AAACCGAAGCTAGAAAGAGATTCTTGAAAGACTTCTTAGAGAGCGTCAGC
CTTCCGCAAATGAAGAGAGGATTCTTCGAGACGGTTGTAGAAAAGGAGTC
GATTGTCTCCAAGTCCTCGCCTGAATGTTATCAACTAATACACGCCGCGA
AACAAAAGATGGAGAAACGGCGGGAAAACGGGGCTTCCAGGGAAGCGATC
GTCATCTTCGGGGGTTCCAACGAAGGAGTGTTCGTTCCGGAGATAGACTT
GTACGACCCGCGGCTGAGTCACTGGGACTCTCTCCCCAGTCTTCCCAGAC
ACACGGAGGGGGCTCGCCACGCCATGGCCGCGCTGAACAACGATCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97448gene:BL97448Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97448_cuf2transcript:BL97448_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97448_cuf2-E1BL97448_cuf2-E1-1564476830-99671Branchiostoma lanceolatumexon
BL97448_cuf2-E2BL97448_cuf2-E2-1564476830-99669Branchiostoma lanceolatumexon
BL97448_cuf2-E3BL97448_cuf2-E3-1564476830-99667Branchiostoma lanceolatumexon
BL97448_cuf2-E4BL97448_cuf2-E4-1564476830-99664Branchiostoma lanceolatumexon
BL97448_cuf2-E5BL97448_cuf2-E5-1564476830-99662Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000010genomeSc0000010:4799160..4802602 -
Properties
Property NameValue
Transcript idBL97448_cuf2
Biotypeprotein_coding