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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97461_cuf1 >transcript:BL97461_cuf1-protein ID=transcript:BL97461_cuf1-protein|Name=transcript:BL97461_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=543bp
XCSHYVSGCSTGQKYEYEYMKPLRTHPDVPLEEYPAACVPMPTGEMFTPQ
KAGRLMERLMQFIASQGQIMVRRAQAKGIWDPWKANFSGYLPANERLIEE
WQKDEEFCRQYLQGINPMLVTVCKDQSRIPAEMLGLKGQGKTTLQLMEEN
RLFIVDYAPMLGVPPTPGKFFYAPIVLMYKEQLAGGKSRLNMLGIQLTRD
KGENEVYSPESAKTHPNKYMFAKMHVVSSDNNVHQFLYHLGYTHLGMEPL
VVAMHTHLPPDHPIHRLLLPHFKDTIGINYLARHSLVSRIFPITDPMFAT
STVGGLIMFLEEWRKYNFMDMAFPEELKRRGFDEAGTDGLENYFYRDDGF
KLWNVYKTYVTGMVNHAYTGDKAVQADKALQEFCRMTEGPGHLHGFPREI
STKKLLIDCLTNIIFNVSAQHSAVNFPQYEYYSFIPNRPAQLSMPMPDGP
NDMLESAVLEALPHETNTTLQVLLSYMLSMPSQTAITGVEAMKDVYPDVH
EKFHTQLLDLSKEIKARNEGLKGEGKVAYTYLDPENVAMSIDI Run BLAST on NCBI mRNA from alignment at Sc0000311:14607..19144+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97461_cuf1 ID=transcript:BL97461_cuf1|Name=transcript:BL97461_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4538bp|location=Sequence derived from alignment at Sc0000311:14607..19144+ (Branchiostoma lanceolatum)
NNNGTGTTCACATTATGTTTCTGGTTGTTCCACAGGGCAGAAGTATGAAT
ACGAGTACATGAAACCTCTGAGGACTCACCCCGATGTTCCTCTGGAGGAG
TATCCCGCCGCCTGTGTTCCCATGCCGACAGGGGAGATGTTCACTCCGCA
GAAAGCTGGACGGCTCATGGAACGTCTCATGCAGTTCATCGCATCCCAGG
TGTGTGTCATCATTGTTCTGACATGAACATGACAAAACTGCTTAGTAGTA
ATTTTTTCATTGCCTTTCGCCAGTCGTACTAAAATCAGTTTTTTTTTTCA
AATGATCAGTCCTCTTTTTTACAGCTTCGACGAGAAGTGTGGCATATGAA
ATATACTTGCAATGAAATAGATGCTTGTAATGCGTCGATAAAGGATGGAA
ACCGCTTGTCTTTTATGCGAGATCAACAGTTTACAGACAAGGGACAAGAG
AAGCTGACTGAACCACCGTTGCACAGATTACAATCATGTGTAAATCATGG
TTACAATCTACACAGGGCCAGATCATGGTGCGCCGGGCCCAGGCAAAGGG
TATCTGGGATCCGTGGAAGGCCAACTTCAGCGGCTACCTTCCTGCTAACG
AGAGGCTCATTGAAGAATGGCAGAAAGACGAGGAGTTTTGCCGCCAGTAC
CTCCAGGGTCCGTTGCAACATTTTCTTTCTAACACACATAACAAAAGGGA
ATTGCAATCGAATTTAAGAAAAAATGGTTTGTCTTTCTTGTTTTCACATT
TGTTTAGTAACATGCAACACATCTACTGTATTGTTAATGATTGTATGATA
AAACTGTCGTATGCGATACAATGTACTACAATGTGGTATTGCGTGCTTTG
ACTGCTTGAACAACGCAAGAGACATAAATTCACACTTAGAATAATTTGGT
ACGTTTCAGTAAGAAAGCAAAATAGTCCAAGAAAAGCCACATGGTTATTT
CGTTTTATTCAACATCAGGCATCAACCCCATGCTGGTGACCGTGTGTAAG
GACCAGAGCCGGATCCCAGCAGAGATGCTTGGCCTGAAAGGACAAGGCAA
GACTACACTGCAGCTCATGGAGGAGAACAGGCTCTTCATCGTGGACTACG
CACCCATGCTCGGTGTTCCTCCTACTCCGGGCAAATTCTTCTACGCGCCG
ATCGTGCTGATGTACAAGGAACAGTTGGCTGGAGGGAAGTCTCGTCTGAA
CATGCTCGGCATCCAGCTAACTAGAGACAAAGGTAAGGCATAAGAAGGGA
ACGTGTAGCTTTTCCCTTTCAGATTTCCCGCTTACATAAGCCACGTTGTA
GTCCTCAGATTGCTATTATACATACATGTGGATTGTCTAAAAGCTAAACC
GCTCATTTTGTCATAGGTGAGAACGAAGTGTACTCCCCTGAGAGTGCTAA
GACTCACCCCAACAAGTACATGTTCGCCAAGATGCACGTGGTGTCATCTG
ATAACAACGTGCACCAGTTCCTATACCATCTGGGCTACACTCATCTCGGC
ATGGAGCCGTTAGTGGTCGCCATGCACACCCACCTGCCACCAGACCACCC
CATTCACCGCCTGCTGCTGCCGCATTTCAAGGACACCATCGGCATCAACT
ACCTGGCCCGCCACTCCCTCGTCTCCAGGATCTTCCCAATCACCGACCCG
ATGTTCGCTACTTCCACCGTGGGAGGGCTCATCATGTTCCTCGAGGAGTG
GCGCAAGTACAACTTCATGGACATGGCGTAAGTTTTGCAATTCGATATTG
AGTTTCGATGTAGCGTCACTTAAACAAGCATGACACGTGTCTTTCATTTT
GCATATGGATGGTTAGTATTAACATGGTAAATTCCCTTTGGTCACCAAGC
CTTCGATAACCTATATTCTATTATTCTATTAAGTTTCCCTGAAGAGCTGA
AACGCCGTGGTTTCGATGAGGCCGGGACGGATGGACTGGAAAACTATTTC
TATCGCGATGACGGCTTCAAACTGTGGAACGTCTACAAAACGTACGTGAC
GGGGATGGTCAACCATGCGTACACTGGTGACAAAGCTGTGCAAGCTGACA
AAGGTTTGCTACCAAATATTTCCACAACCTAAAAATGAATGTGTTTTTTT
TTTATTCTTAAGGTAAACAGAAGAAATTAAGAAACAGAGTCTGTATGTAG
CATTGACGATACTTTGTTTTCCATCATTTTTTGTTTGTAGCCCTTCAGGA
ATTCTGCAGGATGACTGAAGGTCCTGGACATCTTCACGGATTTCCACGTG
AGATTTCTACCAAGAAGCTGCTCATCGACTGCCTGACCAACATCATCTTC
AACGTGAGCGCGCAGCACTCCGCCGTCAACTTCCCGCAGTATGAGTACTA
CTCCTTCATACCCAACAGGTACGGAGAGCTGGAAATATTCTCTTTTAAAA
GACATGATTTATTGCATGCTATCGAGGTTTCGAAACGGTAAAATGAATTT
ATTACAAACGTCTTGATTATGCAAGTCAATTTACGCTATGTGTAACGTGT
GCTGACATGTCATACACGTGTACCGCTCGGACTCGGGGATCAGAAAGTAT
TTCAAGCGGACTCTAAAAACACTCATTCCACCCTACCTCACACAGGCCGG
CCCAGCTGTCGATGCCGATGCCTGACGGACCGAACGACATGTTGGAGTCC
GCTGTACTCGAGGCTCTGCCGCATGAAACGAACACGACTCTTCAGGTCCT
CCTGTCGTACATGCTGTCCATGCCCTCCCAGACTGCTATCACTGGGGTAA
GATTCTACTTTGAATATCTGTTATGATCCCCATCGTTTGTAAAAGACACG
AATTTTTTCAACGTATAGATATTACATTTGTATTCAGAGCCATGATATTT
CTGAGTAGCCCCAGTCTAAGTAGTGATTGTAATGGGTCCCGGGTGAAAAA
TTTTAGTTCTTGCATCTCATAAGGATACATCATTCTCAGTGTGTCTTATT
GCATATTATCATATAGCCAGATGTCGTTGACCAATCAGATGTCTACACAT
ACGGGTCATAGTTTTCACNTCAGATGTCTACACAAACGGGTCATAGTTTT
CACATATTCACCCCATTTTACGGGTCATTAATGTCCATACAACACTTTTT
CCAGGGTTCCCATTGTTTTTTATTCGATTCTAAGGAACTTTCTGATATAG
ACAGACTTGTAAAAGCAAAGTGATACATGAATTTAGCGATGATAAAAAGT
ATACACGATAAATAACAACATTGATATCATTTCCAAACTGCCCCCTACTT
TACACATGGTACAGGCCTCAAAGGAGGCAGCCATCTTGATTTTTTGCGGT
GGTGTGACGTTTTTTGATGCATGACAATGGCTATATGATATAACGTTACC
GACCCGGAAATAACACATTGTCGGTTATCATAACCACCTCATAGACGACC
TCGTCCGCATTGCGGACTCGGTCGATAATTCGGTGGNAATTATTTGGTTA
TAGACAATGGGTTATGACACCGTATAGACCAAAGGAAAGCCGGTTATTGA
CCCTATATTAGTGACAAGCGTGTTGTTTTTTAATTGTCCTTTCCTTTTAG
CGCTAGCCCTCCCTTGGTTCGGTTGGTTGTTGTTGCCTTTTCCTGTAACG
TACACCTAATGCTCAGTAAGCATTACATCTCATATGTATAGAATTGCTGT
TATTTGGTTAAAACCTACAGTACCTACTTTCAGCGTACTACCAGGTTCTC
CTCTGATTCACACCACTACACTGTACAACTACCAGCCTCTAAGTCATTCT
ACAGTAACAGCTTTTTTCCACGAACTGCAAAACTCTGGAATTCCCTCCCA
GCCCACTGCTTTCCCCCCGAATACAACCTACAAACCTTCAAAACAAACAC
ACACCGCCGTCTCTCACCTATGCCACATTAGTTCAATTAGTTCAATGCCG
AGAAGTGGCCTCTAACGGCCCTGTATTGAGCGAGATCGTTAAAAAAAAGA
CGGACCGATAAGAATGCTTTGTTTGTGTCATGTACAGGTGGAGGCTATGA
AAGACGTGTACCCCGATGTCCATGAGAAATTCCACACACAGCTCCTGGAC
CTCTCCAAGGAGATCAAGGCTCGTAACGAGGGTCTGAAGGGGGAGGGGAA
GGTCGCCTACACCTACCTGGACCCCGAGAACGTCGCCATGAGCATCGACA
TCTAAAGCACACCTGTCATCTGGCTGGTGTTTCGTACAGAAACCTCTAAG
ATGTTATCAGTGGTGGCAGTACGCTACAGTACCTAACGAAACGACGCCAT
GATACTTGAGATACAGCTGGAATTAGTGACTGCGCTTAACATCCGTAGAG
AAGAGTTGTTCCAATGTAGGCATAAACCAGCAGCAAGCGTTTGTGATGGA
TTTTTTTAAACTATGATACACAAAGAGAAATCAATAATCACACAAAATGT
AAGGCATGTGTTATCCACAATTAGCTTAACAATATGTGTTGACATAGTAA
GTGAATTTGTTCAGTGGAGTGCTATAAACCAAAACGTACAAGAAATGTCT
GGTATGGGCAAGTGACAAAGAGCTTTTGATAATGTTTG Coding sequence (CDS) from alignment at Sc0000311:14607..19144+ >transcript:BL97461_cuf1 ID=transcript:BL97461_cuf1|Name=transcript:BL97461_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1632bp|location=Sequence derived from alignment at Sc0000311:14607..19144+ (Branchiostoma lanceolatum)
NNGTGTTCACATTATGTTTCTGGTTGTTCCACAGGGCAGAAGTATGAATA
CGAGTACATGAAACCTCTGAGGACTCACCCCGATGTTCCTCTGGAGGAGT
ATCCCGCCGCCTGTGTTCCCATGCCGACAGGGGAGATGTTCACTCCGCAG
AAAGCTGGACGGCTCATGGAACGTCTCATGCAGTTCATCGCATCCCAGGG
CCAGATCATGGTGCGCCGGGCCCAGGCAAAGGGTATCTGGGATCCGTGGA
AGGCCAACTTCAGCGGCTACCTTCCTGCTAACGAGAGGCTCATTGAAGAA
TGGCAGAAAGACGAGGAGTTTTGCCGCCAGTACCTCCAGGGCATCAACCC
CATGCTGGTGACCGTGTGTAAGGACCAGAGCCGGATCCCAGCAGAGATGC
TTGGCCTGAAAGGACAAGGCAAGACTACACTGCAGCTCATGGAGGAGAAC
AGGCTCTTCATCGTGGACTACGCACCCATGCTCGGTGTTCCTCCTACTCC
GGGCAAATTCTTCTACGCGCCGATCGTGCTGATGTACAAGGAACAGTTGG
CTGGAGGGAAGTCTCGTCTGAACATGCTCGGCATCCAGCTAACTAGAGAC
AAAGGTGAGAACGAAGTGTACTCCCCTGAGAGTGCTAAGACTCACCCCAA
CAAGTACATGTTCGCCAAGATGCACGTGGTGTCATCTGATAACAACGTGC
ACCAGTTCCTATACCATCTGGGCTACACTCATCTCGGCATGGAGCCGTTA
GTGGTCGCCATGCACACCCACCTGCCACCAGACCACCCCATTCACCGCCT
GCTGCTGCCGCATTTCAAGGACACCATCGGCATCAACTACCTGGCCCGCC
ACTCCCTCGTCTCCAGGATCTTCCCAATCACCGACCCGATGTTCGCTACT
TCCACCGTGGGAGGGCTCATCATGTTCCTCGAGGAGTGGCGCAAGTACAA
CTTCATGGACATGGCTTTCCCTGAAGAGCTGAAACGCCGTGGTTTCGATG
AGGCCGGGACGGATGGACTGGAAAACTATTTCTATCGCGATGACGGCTTC
AAACTGTGGAACGTCTACAAAACGTACGTGACGGGGATGGTCAACCATGC
GTACACTGGTGACAAAGCTGTGCAAGCTGACAAAGCCCTTCAGGAATTCT
GCAGGATGACTGAAGGTCCTGGACATCTTCACGGATTTCCACGTGAGATT
TCTACCAAGAAGCTGCTCATCGACTGCCTGACCAACATCATCTTCAACGT
GAGCGCGCAGCACTCCGCCGTCAACTTCCCGCAGTATGAGTACTACTCCT
TCATACCCAACAGGCCGGCCCAGCTGTCGATGCCGATGCCTGACGGACCG
AACGACATGTTGGAGTCCGCTGTACTCGAGGCTCTGCCGCATGAAACGAA
CACGACTCTTCAGGTCCTCCTGTCGTACATGCTGTCCATGCCCTCCCAGA
CTGCTATCACTGGGGTGGAGGCTATGAAAGACGTGTACCCCGATGTCCAT
GAGAAATTCCACACACAGCTCCTGGACCTCTCCAAGGAGATCAAGGCTCG
TAACGAGGGTCTGAAGGGGGAGGGGAAGGTCGCCTACACCTACCTGGACC
CCGAGAACGTCGCCATGAGCATCGACATCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000311 | genome | Sc0000311:14607..19144 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97461_cuf1 |
| Biotype | protein_coding |
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