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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97465_cuf2 >transcript:BL97465_cuf2-protein ID=transcript:BL97465_cuf2-protein|Name=transcript:BL97465_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=695bp
MAGPIQAFTASDRRHFAFIDTLRRISDELSKRETAILKLYCTHIIPRGQL
EKMKRPIDVFDRLQKLDKLDSENLDFVEELLGRIPRPDLIRNVLRPFQPA
DRELPETPELLPGPSSASGSTEEGPVRFTVHGHTRMVEETKNRYRTNLAR
IGRTKKSSIKFKGYKKHGSILVEFVVPQETLDLLRLMARHSDPRLVFMGV
TSLQIGREDPVAVPERTMIYDIQNEFSASSRLPQDDIHVGCRASPPRKPI
PHFWSSLSALNLFSDALLLHLQLAESLEYQGFSYSLVQALVQNDQVREHQ
MRQVVKTLKEKEVDHHTMMTMRSKLTIAENRAKTLEDENDSLQRLLEQAQ
EEKLKLEEAAVGLVEYTGEKYMGEKTSADSEKKEAEPTAESPEEPTEAAA
LGQTEDSSSDESIKFGGQGSEAGKFAAPRGVIVSPDNEIFIADMKNNRVQ
VHNIRGDHLLLFPTVVSGGGTIRPQDIAMDNSGHLWVVGRDKSSDFLVQY
TREGQVLQEVSLRDIGYRYRGVAVNKRNNEVLVAESDTTRAEILVFRPDG
SLARRFGHVGVVGRAARWFTGRARMEDPGFITVNEEGNILISDWDAACIF
VYDQTGRLLFNFGGLGSGEGQLRWPCGICTDFSGNIIVADFGNGRLEQFA
SRGEHLRHIDIAKRYGSPDGVALGPMGHLVVTYVEKNAIAVFQDY Run BLAST on NCBI mRNA from alignment at Sc0000011:5003029..5008157+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97465_cuf2 ID=transcript:BL97465_cuf2|Name=transcript:BL97465_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=5129bp|location=Sequence derived from alignment at Sc0000011:5003029..5008157+ (Branchiostoma lanceolatum)
GTGAACTCAAGTGTGTTTGTGTGTATGAACGCACTTGTACAGCCAAACAC
CTGCGAACGTCTGGCCATATATCTTAACTCGTTGTTGGATAGTTAGCGTT
TCAGACGTAACTGTTACCTGCCGATGATCTCATTTCTGTGTCGTCCAATC
TCCATAACTGTCAAGCTGCGCGGAATAAAGGTTGGTAACTTACGTGTTGG
AATGCACAGTACGTACCGTTTGAAAACACCTGACACAAGAATGAGAAATG
GCACATTTTGTTTTTTATTGATTGCAGTAACTATCCGTTATGAGCAGCAA
TCAGCATGCAAACGTTCCTCTTAGTAAATTAGTTTGTATACATTGCGTCA
CGGAACTGCAAATGTTCATAGACAATAAGGGAACTGCCACGTCCCAAAAT
GGCGCAGAAAAAAACACCTGACGATTGGTAGACTCCGCCCACTTTTTACC
GATCATGTGGAACCATGTCGCCAGTTGCACGATATATGGCACAGAGGATG
CTAGGAACGAGCAGAAATGGTCCCTCGCTGATGAGTTTTTTTTGTCTTAG
CCAATGATTTGTCATCTAAAGTCAATGCTATTGTTTGCTCCTTTGTATGC
TTTGTTATGGTTGGACATGTGATACTTAACTGCTACCCCTAAACTTCTTC
CTGAGCTCATTTTTACAAGGGCGGGAGGTTACACATGTGTGTACACGAAG
GGATAGTGTATTTGATATCTAGGGTGTCTGAATGTGTGCAAAAAACGTTA
TCACGGTGATGTTTATATACATAATTCACAAATGTAACAGCATTTGTTCG
TCGATAGTTTCGTCAGGTTGGTACATAAAGGCATACAGTATGTATATGTG
CTTTGTTGCACAACCAATTGGATCTACCTGTCGTTGAACATTTCGGTAGT
CCTTACACCGCCTTCCTTGGGGCAATACTGACTGATGAGGGAAGGATAGA
TATAAGTCACATTTGGGACCGAATATTTATCACTGCAGCGCCACCTAGCA
GTCTAGTTTGAAGTGGAACCAGTCAGTCATCAGCTCCAGTCAGTATTACC
CAGAGTAATGTAGCAGATGGACTATCGAAAAGTTAATGTTGACACGGAAA
TCCTTTCGAGTGTGCCGCAAAGAACTTTATTATACATATATATATATATA
TATATATATATATATATATATATATATATATGTATGTATGTATGTATGTA
TGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATG
TATGTATGTATGTATTGATATATATATTTAAATATATACCCATAGCAGAT
GTTTTTTACAATTACAATGCAGGCATCATGGCTGGGCCAATCCAAGCCTT
TACGGCTTCCGACAGGCGACATTTCGCCTTCATCGACACCCTGCGTAGGA
TATCGGACGAACTGTCGAAGAGGGAGACCGCCATCCTGAAGCTTTACTGC
ACTCATATCATCCCCAGGGGCCAACTGGAGAAGATGAAGCGCCCCATCGA
TGTCTTCGACAGGCTTCAAAAACTCGACAAACTCGATTCCGAGAACTTGG
ACTTCGTTGAGGAGCTCTTAGGCCGTATTCCTCGACCAGATCTGATAAGA
AATGTTCTGCGGCCGTTCCAGCCGGCCGACAGAGAGCTTCCAGAGACCCC
AGAACTATTGCCTGGGCCCAGCAGTGCTAGTGGCAGCACAGAGGGTGAGT
TATAACCTCATATAAGTCACTGAGTTAGTCGTAGGATGTCCACCGTGTTA
AACGATGATAGAAACTGTGAATTCCCCATAGAAATGTGAAAAATCCTCTA
CGTAATACTAGCAGCTACAACTTAAAATAGTTATATTTACTGCGTGACCT
AGTACAGTCATAATCAAATGCAAACAAAATCAATTTCCTAATTGCAATCA
AAACAATGTTATACAATTGTAACAATACGTTTTATGATCGTCATTTATGC
TTTCCAAGTTTTCATAATCTTGTTCTGTGTTTTCGTGTACAGAAGGGCCC
GTCAGGTTCACCGTTCATGGCCATACCCGTATGGTGGAGGAAACAAAGAA
CAGATACAGAACCAACCTTGCGCGCATTGGCAGAACGAAGAAGTCAAGCA
TCAAATTCAAGGGCTACAAGAAACACGGCAGCATTTTGGTGGAATTTGTT
GTGCCACAAGAGACACTGGACTTGCTCCGGTTAATGGCGCGCCATTCCGA
CCCACGACTCGTGTTTATGGGCGTGACGTCACTACAGATAGGCAGAGAAG
ACCCAGTGGCCGTGCCCGAAAGAACGATGATTTATGGTGAGAACACATTT
TTGATGAAGGGTTAGTGAACCAGCTAGGGGTTTACGGCCGGTGACGTAAT
GCCTACCCAGAACCATGGGCCACCGAATAAGCTTACCCGCATAGCCTAAT
ACCGCTATATTTATATTGCATTTTTTTTTTAATTTCTTATGTAAAATCAG
TGTCTTTTTTACAGACATTCAGAACGAGTTTTCAGCGAGTAGTCGGCTAC
CACAAGATGACATACACGTTGGCTGCAGGGCAAGTCCACCGCGAAAGCCC
ATCCCACACTTCTGGTCCTCCCTATCCGCTCTGAACCTGTTCTCGGACGC
CCTGCTTCTCCATCTGCAGCTAGCCGAGAGCCTGGAGTACCAGGGCTTCT
CCTACAGCCTGGTACAGGCTCTGGTACAGAACGATCAGGTGAGGGAACAC
CAGATGAGGCAAGTCGTCAAGACGTTGAAAGAGAAGGAGGTGGATCACCA
CACAATGATGACAATGCGGTCAAAGCTCACAATTGCCGAAAACAGAGCTA
AGACTCTGGAAGACGAAAATGATAGCCTTCAAAGGCTGCTAGAACAAGCA
CAAGAAGAGAAGTTGAAATTGGAGGAGGCTGCCGTAGGTTTGGTGGAGTA
CACGGGAGAAAAGTACATGGGAGAAAAAACATCAGCAGATTCTGAGAAGA
AAGAGGCCGAGCCGACCGCGGAATCACCCGAAGAACCGACAGAGGCGGCG
GCGTTAGGTCAAACAGAGGATAGCTCTAGCGATGAATCAATCAAGTTTGG
TGGTCAGGGGTCGGAAGCAGGGAAGTTTGCTGCCCCACGCGGAGTCATTG
TCTCGCCAGACAACGAGATTTTCATCGCTGACATGAAGAACAACCGAGTT
CAAGTTCACAACATCCGAGGCGACCACCTTCTGCTGTTCCCGACAGTTGT
GTCAGGCGGCGGGACCATACGTCCGCAAGATATAGCGATGGACAACAGCG
GGCACCTGTGGGTGGTGGGGCGGGATAAGAGTTCTGATTTCCTTGTTCAG
TACACAAGGGAAGGCCAAGTTCTGCAGGAAGTATCGCTGCGGGATATCGG
CTACCGGTACCGCGGAGTTGCGGTTAACAAGCGGAACAACGAAGTCCTCG
TGGCCGAATCGGACACAACGCGCGCCGAGATACTAGTGTTCCGGCCAGAC
GGGTCGCTAGCTCGGAGGTTCGGTCATGTCGGTGTCGTGGGCAGGGCTGC
CCGATGGTTCACTGGTAGGGCGAGAATGGAGGATCCAGGGTTCATCACTG
TGAACGAAGAAGGGAACATCCTCATCTCCGACTGGGATGCTGCATGCATC
TTTGTGTATGACCAAACCGGTCGTTTGCTGTTCAACTTCGGGGGTCTGGG
AAGCGGTGAAGGTCAGCTGAGGTGGCCTTGTGGCATCTGCACGGACTTTT
CTGGGAATATCATCGTGGCCGACTTCGGCAACGGGCGACTGGAGCAATTC
GCAAGCCGTGGAGAACACCTCCGCCACATCGACATCGCTAAACGATACGG
TAGTCCCGACGGCGTTGCCTTGGGGCCCATGGGGCACCTGGTGGTCACGT
ACGTCGAGAAGAACGCCATTGCTGTTTTCCAGGACTACTGATCTGACGGA
AGAGGACAGTTCAACCCCGACTAAAGTGAGATGGGCTGTACCTGGGAGGG
ATTTCAGCGGGTGGCAGCAAACAGCCAATGCATGGAAAACATTGACAGGC
CCGCATCAGTGATAGAAAGAAAAGCGGCGGAAATGACTTGACTTGAATCT
GACGGTAAGAAAACTACGAGAGCTAAGGAAGCTTGCGATGAGCTGGACAA
AGTGGAAAAAAGTGCAGAAAGACTGATTGCAGCTGCAGAATGTTCAGACC
ACTACAGTAGCAGAACACAGTGGACTACTACTACTACTACTGATGTGACG
GTATCAGAAAATTAGCCTGACTAAATCACGCTTCCAACAGAACTTGGACT
GGTCAGTTCCCCAGAAGCTTGATGGCCAGTCAGGAGAGATCGTAATTGTG
ATGTATGTATATGTGCTAACATGTACCAGTTATTGCTACACTGAGAACTG
TCTGTTATCATGGTGCTTGAGGCTGTGATGACTGGTTTCCATAGTGACAG
AGAATCATGAGCTCCTATTGGTACTTCGAATTCTCTTTTTTTAAATCAGT
CTCCTGGCTTGAAAGGTGAACTGCCACAAATTTTCCAAGAAGGGCTCTAT
AGCCCTGGATAATGATTTTTATAACTTTACTGATTCACCAGAATTCGAAG
AGTTAGACAGGAAAGGGAAGAACAGTTGGCAACTTTATTCACAAATCACT
CAGCCTAGTCACAGGCTAGTGCTGCCATTTACCACTGTACATATTTTCAG
CCAGCATGAATTACTACAAACACAGAAGACCTAATATACGGCGCGTTTAT
TTTGTATACTGTTGTGCACGTAGCAATGACAAATGTATTCAACAAAACTT
GATTACGATTTTGTCTTAATCTTCGCATTGTTCTAAGATATACATTTACT
TCAAAAGCTTTTTAGTTGTACATTCAATTTAATCGATAATCGTTCTTGTG
GATTCTTTAAGTCAAGCCTCTCTGTATGTTTTTTGTCACTTTACATGTCT
CTGTATATTTCATGTAATCTTACTCTCTATTCACTGTGTAAACTATGCCG
TAATACATATTCTAGTAAATTGTGTATCACCACCAAAACTAATGTCACAA
CTGTGTGCCCAAGAGCAGCACATTGGTGCCGCTAATCAATAATAGTTGAG
ATTTATTGGATAGGCAAGAAAAAGGCAATAGAACTGGATTCAGGGATGAG
TTAATTGACACCCTTTAGCCACAAACTCC Coding sequence (CDS) from alignment at Sc0000011:5003029..5008157+ >transcript:BL97465_cuf2 ID=transcript:BL97465_cuf2|Name=transcript:BL97465_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2088bp|location=Sequence derived from alignment at Sc0000011:5003029..5008157+ (Branchiostoma lanceolatum)
ATGGCTGGGCCAATCCAAGCCTTTACGGCTTCCGACAGGCGACATTTCGC
CTTCATCGACACCCTGCGTAGGATATCGGACGAACTGTCGAAGAGGGAGA
CCGCCATCCTGAAGCTTTACTGCACTCATATCATCCCCAGGGGCCAACTG
GAGAAGATGAAGCGCCCCATCGATGTCTTCGACAGGCTTCAAAAACTCGA
CAAACTCGATTCCGAGAACTTGGACTTCGTTGAGGAGCTCTTAGGCCGTA
TTCCTCGACCAGATCTGATAAGAAATGTTCTGCGGCCGTTCCAGCCGGCC
GACAGAGAGCTTCCAGAGACCCCAGAACTATTGCCTGGGCCCAGCAGTGC
TAGTGGCAGCACAGAGGAAGGGCCCGTCAGGTTCACCGTTCATGGCCATA
CCCGTATGGTGGAGGAAACAAAGAACAGATACAGAACCAACCTTGCGCGC
ATTGGCAGAACGAAGAAGTCAAGCATCAAATTCAAGGGCTACAAGAAACA
CGGCAGCATTTTGGTGGAATTTGTTGTGCCACAAGAGACACTGGACTTGC
TCCGGTTAATGGCGCGCCATTCCGACCCACGACTCGTGTTTATGGGCGTG
ACGTCACTACAGATAGGCAGAGAAGACCCAGTGGCCGTGCCCGAAAGAAC
GATGATTTATGACATTCAGAACGAGTTTTCAGCGAGTAGTCGGCTACCAC
AAGATGACATACACGTTGGCTGCAGGGCAAGTCCACCGCGAAAGCCCATC
CCACACTTCTGGTCCTCCCTATCCGCTCTGAACCTGTTCTCGGACGCCCT
GCTTCTCCATCTGCAGCTAGCCGAGAGCCTGGAGTACCAGGGCTTCTCCT
ACAGCCTGGTACAGGCTCTGGTACAGAACGATCAGGTGAGGGAACACCAG
ATGAGGCAAGTCGTCAAGACGTTGAAAGAGAAGGAGGTGGATCACCACAC
AATGATGACAATGCGGTCAAAGCTCACAATTGCCGAAAACAGAGCTAAGA
CTCTGGAAGACGAAAATGATAGCCTTCAAAGGCTGCTAGAACAAGCACAA
GAAGAGAAGTTGAAATTGGAGGAGGCTGCCGTAGGTTTGGTGGAGTACAC
GGGAGAAAAGTACATGGGAGAAAAAACATCAGCAGATTCTGAGAAGAAAG
AGGCCGAGCCGACCGCGGAATCACCCGAAGAACCGACAGAGGCGGCGGCG
TTAGGTCAAACAGAGGATAGCTCTAGCGATGAATCAATCAAGTTTGGTGG
TCAGGGGTCGGAAGCAGGGAAGTTTGCTGCCCCACGCGGAGTCATTGTCT
CGCCAGACAACGAGATTTTCATCGCTGACATGAAGAACAACCGAGTTCAA
GTTCACAACATCCGAGGCGACCACCTTCTGCTGTTCCCGACAGTTGTGTC
AGGCGGCGGGACCATACGTCCGCAAGATATAGCGATGGACAACAGCGGGC
ACCTGTGGGTGGTGGGGCGGGATAAGAGTTCTGATTTCCTTGTTCAGTAC
ACAAGGGAAGGCCAAGTTCTGCAGGAAGTATCGCTGCGGGATATCGGCTA
CCGGTACCGCGGAGTTGCGGTTAACAAGCGGAACAACGAAGTCCTCGTGG
CCGAATCGGACACAACGCGCGCCGAGATACTAGTGTTCCGGCCAGACGGG
TCGCTAGCTCGGAGGTTCGGTCATGTCGGTGTCGTGGGCAGGGCTGCCCG
ATGGTTCACTGGTAGGGCGAGAATGGAGGATCCAGGGTTCATCACTGTGA
ACGAAGAAGGGAACATCCTCATCTCCGACTGGGATGCTGCATGCATCTTT
GTGTATGACCAAACCGGTCGTTTGCTGTTCAACTTCGGGGGTCTGGGAAG
CGGTGAAGGTCAGCTGAGGTGGCCTTGTGGCATCTGCACGGACTTTTCTG
GGAATATCATCGTGGCCGACTTCGGCAACGGGCGACTGGAGCAATTCGCA
AGCCGTGGAGAACACCTCCGCCACATCGACATCGCTAAACGATACGGTAG
TCCCGACGGCGTTGCCTTGGGGCCCATGGGGCACCTGGTGGTCACGTACG
TCGAGAAGAACGCCATTGCTGTTTTCCAGGACTACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000011 | genome | Sc0000011:5003029..5008157 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97465_cuf2 |
| Biotype | protein_coding |
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