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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97473_cuf12 >transcript:BL97473_cuf12-protein ID=transcript:BL97473_cuf12-protein|Name=transcript:BL97473_cuf12|organism=Branchiostoma lanceolatum|type=polypeptide|length=400bp
MAVKAALMFVAVAVLLAYYCDQPVPEGIAEPRMYAKVQGMVFRISANLAR
IGEYLGVGTEPQNLRSVMGAIVNVGLKLKGSSYREGLKVTDTMFDGVKVR
VYEPVSAAQSSSKVPGLVYFHGGGWVILNVDTHDPLTAHVAKQLGTVVVS
VDYRLAPEHVFPAAFDDSVAATKFFLQNAEKYNVDRTRIGISGDSAGGNL
AAAVTLALAKEEDLPKLKTQALINPILQAINFETPSYIAHGHLNTLTKDK
IVSFWLWYLNNDLSFKKVFEANNHTGVQIEKSQYAGYVDPKMVDVTTVKK
ENIKFPEIPNIATILDPHFAPLMADDADLKGLPPTYVMTCEYDVLRDDGV
MYARRLGKAGVEVNHDHYEHGFHAFLNSFDDYELAGIAMQNYLAYLKKIL Run BLAST on NCBI mRNA from alignment at Sc0000011:5263691..5269370- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97473_cuf12 ID=transcript:BL97473_cuf12|Name=transcript:BL97473_cuf12|organism=Branchiostoma lanceolatum|type=mRNA|length=5680bp|location=Sequence derived from alignment at Sc0000011:5263691..5269370- (Branchiostoma lanceolatum)
CAATGTTGAACAAGGTACTGTACAGTGATTCAATAACAAACATAGCAAAC
AGGAACACGCGACTATTTTCTGTAACAAACATAACTTACCTCGGCCTGTG
TACCAGTCTTTCTGTTCAAACGTCTGGATGTGAATGTAGCAGAAAAAGAT
CAGGTCACATGATCCAAATTTGGGGCGAAAATCTTCCTTCCTGCGGCCTG
TTATTACAGAACGTAGACAATCAGTAATTCAGGGGTGTACCCCGGTTCTT
CTTTGTACCAGGATATCCTTAGATCGTCCGTAATTTGCACGGTTTGGCAG
AAAATTTGTTGACCTTTTCTCAGTTGCCGGGACGCTATCAGCTGAAAAAT
GGCGCGAAAGAACAACGCTGACCCAGACGCCTGTCGCTGATTGGTCCAAA
TTATGACGAAATCTCGCCGTGATTGGTCAGCAGTTTCGCGCCAGGCCCCA
GAATCTGAATACTTTGTCTGAAGTATGTAGCTAATCTTCAAGCAGATGTA
GGGTCATCATTCTCACCATCGTATGGTCCTGCCCAGTGTTTTATGTATGT
TTGATGCTTTTTATACGTCTGGTCCGCGTTTTCCTCTCTTCCCCTATCCA
ATAGGAGACTTATTAGATAGGAAGCACAATAAAACAGTTGACTGGATATC
TATGGATCGTTACCTTAGGAAAATCTCTGACAAACTAAAGTTAGAGTCGA
GTTGATTCCGCCAGGGTACTAGTAGTTAGTAATTCATTAGGTTAACTATG
CCTGGTTGATGCAAGGAGGTTATAGGGACCTAAAACATTCTTAGCTGATG
CAAGGACCAAGGAGGCTATATATTTAACCTCCTCGCAAGGACATTATAAA
CTATATAATGTCTTTGGTTGATGCTATGATTAGCGTATTGGTCCCGACAT
ATAATTATAAAGGGGGCGTGTCGTATAAAAGACGAATGTCACTTTATTAT
GGATTTGTTAACGGTAACATGATAAACGCTCAAAGCTTTGTACCTTTCTA
TCCGCTTGCTCAAAACAATCTAATGATACAATCCAAGTCCTTGTACAATC
CTATTAATTTCAATTACATTGTAGGGGAAGATGACCATTACTGTGTACAG
GTAGGTAAAAACGTCACGGACTGTTTCGATATAACAACGAGAGGTCTAAA
CAAACGACACGTTAAACTCAACATGTTGATATATTCATATACCTGTTTAT
ATGTTAATTCATGAGCATCCACTTGCTTGTTTGTATGTGTAATTGTCGGA
AGACCTCGCGAAAGTAGCCGCAGCTTGCACCTTGTGTCGATAAACTGAGG
TTCATATAGATTTGCATATAATGAGGGGACGTGTCCGCTCTGATGCTGAA
GCACAAAGAACGATCGAAGCGTAAACAGGACAGGTCAGATTCCAACACGC
CCGGATTCCAGTCCTTTAGACAACTTAGCAAGGTAGGGACATTTTGCCAA
ATTCGCGGGAAATTTTGCAACTTTTGGTGTACCTGACATAAATCCGGGTT
TAATACATAAATCCGCCACTTTGAAAGAACAGTGGGGTTGAGAGATCTCT
AGTACAACACCCCCAGGTATGCAATGTTAAGATATACAGGAGTGGATTGA
ACTGGGGGACGTTGGGTTGGAGATCTGTTTGGACGTATCTTTTCAGGGTG
GAATTATGTACCCTCGTGGAATTATGTTAGTATATGTTTGGTGTTGCTCA
ACAATGATTGAAGCGTTTGTAAGCGGGATACTACCGTGCCATATTTTACC
GTCCCGTGCATGTGTCGTCTGACATTGTTGTTTGCTCAGACAGAACCATC
ATGGCGGTGAAGGCAGCCCTAATGTTTGTGGCGGTGGCGGTTCTGCTGGC
GTACTACTGTGACCAGCCTGTTCCAGAGGGCATCGCAGAGCCACGGATGT
ACGCAAAAGTGCAGGGGATGGTGTTCAGAATATCGGCGAACCTGGTAAGG
GTCAGGTCACGTACGTCGTACGACCGTCGTGCGATTTTAAGCTTTACTAC
TGACGCATGCTGACGGTGACATTCTTGGGATATAGTTACATGTCCGGCAA
AATTTAGCCGTCTTAAAGGTCTTATAAGATTATAAAGGGCTGTCATAGAT
CCTAGCTTGTCGGTGCTTGGTTCTGTTGCAGCCTGTAAAATCGTACTCTC
CAAGCAGAGGTTAAGAGTGGAGAAGATCGTGACCTTTTTACCCTCTGCCC
CGTTTTTTGTCGGCCAAACGGGGCCGATAAAAAGGTCATCTCCTTGGCCG
ACGAAAAACGGGCCAGAGGATAAAAAGGTCACGATCTCCTCCACTAACCT
CTGCTTGGAGAGTATCAAAATCGCAAGACGATTCTACATTCTACATTCTA
GTCTAGTCTACCTCAGTACTTGTTGTTTTGTCGCCCGGTCTCTCTTTAAT
ACCACACCCACCGTTTGTTTGTTTAACCCTTATCTATTTATGAGAAGCTC
AAATCGGCCGGCAGGTCGCTTTTCATTGAGGTCATGAGGGAAGAGGTAAG
GGTCAGACAAGATACTCGTATAACAGAGATACGGATTACATCATTTTAGT
CCTAATAAATCTATCAACTTGATATTGCACTACTAGCCCTAGGAGGGGGT
CATTAACCTCCGCCAGCGAGAGATGTGTAAACACAGGCTAATTGTAATAC
TAGTAGTTACGCAATACAAATCGACATCTTCCTTCATAAAGAAGCAGACC
ACTTTTCGAATGTACAATACTGTTTAACAAAAACTGAATACAAAAATTAA
AACTTGATTAAACCACAGAAGTTTGATCAAGCCTTTGTTATATTCTTCTG
ACCTAATTCGCTGTGCTTGAAAGTGCCGAGGCATATTGATTATTGTGAAC
AATTTTTTAAAATATATTCATATGGTTTTTCGTCTCATTTCTCCAGGCTA
GAATCGGAGAGTACCTCGGTGTAGGTACGGAGCCTCAGAACCTCCGGTCA
GTCATGGGGGCAATAGTAAACGTTGGTCTGAAGTTAAAAGGCAGTTCTTA
CCGCGAGGGATTGAAGGTCACAGACACCATGTTTGACGGGGTCAAAGTCC
GTGTGTACGAGCCAGTGTCAGCAGCACAGAGTAGCAGCAAAGTGCCGGGG
CTGGTGTACTTCCACGGAGGGGGCTGGGTTATCCTGAATGTCGGTAAGAT
CTTCGCTTATTGATTTAGATCCGAGGTAAAGGAAAATCTAAATATAGCCC
CATAGCCTTTTTGAGGCCGTTGCGGCAGTAGCTCCTATATCCTATAGGTT
GTTATCAAGTGTATCTAGCTAGGGTATGGTATTGGAAGGCGAAGCCCATC
CCTCTTCTTCCACCACCTTTTACCTACCAAACCGAAGTCAGGTAGACGTA
TGCACCTGGGTGGAGTGAGGAAAGTCGTGTAAAGTGCCTTTCCCAAGGGC
ACAACATCGGTGGCATGTCACGTGATTAGAACTTAGGACCTCTGTGTTCT
GGGCCAAACAGCCTAACCGTTGCGCCAACAAGACGCCACAACCTTAGGAC
CGGAGAAAAGAATCCAAAACGCGTGAAATATTTATCTGAATTGTTGTTTG
ATATATTTTCACATTTTCCCGTTTCTTTCCCACCTTTACATGACCACATG
CTACGAAATACTCGGAGAGAGGACAGAGCATATATCATAGACATACCTGC
ATATTCTTATATGGATAGACATGCCTGAACACCCCACACAATACTGATCT
CAGCCTGGTGTTGTTTACAGACACCCACGATCCGCTAACGGCTCATGTTG
CCAAACAACTGGGGACTGTTGTTGTGTCCGTGGAGTGAGTATCTTAATGA
TGTTTTTATGTACCCCACAGTAAAATTCAAACGCAATTCTAACTACATTT
GTATCTCATAGGTAATTGAATCACAAGGGTCGACCTTGTCAAGCACCCCG
TTGGTTTCATTGGATAGGTCGTGACATAACTCCGGACGTTCATGTAATGA
TCTTTATTTGCAAAGACATGCCCGAACTCTAATTGCAAGGGTGCACACAG
ACACGATAACATAAAAAAAGGTTGTTTGATTGGTTAACAGCTGGTAAGAG
TCCACACCCACAAAAGCAGAAACCAAAGGGTAGTTTAGCAGAACTTCACC
GAGGTATATTGTCTAGGCCGCAGGCGTAGGAGAATGAGCTTTGGTTGAGC
TGCATGGAACTCGTACCTGCGGCGGCTGGCAGCAACTCCCTCTGTTTTTG
ATAAACAACAAACTCTAGTCTATCAGCTAACAGACATCGATATCTTCCCC
GATCATCTTACAGCTACAGACTCGCTCCTGAGCACGTGTTTCCGGCAGCG
TTTGATGACAGTGTTGCTGCCACAAAGTTCTTCCTCCAGAATGCAGAGAA
GTACAACGTTGATCGCACACGTATCGGCATCAGCGGGGACAGTGCGGGAG
GGAACCTTGCTGCAGCCGTCACTCTCGCACTCGCTAAAGAAGAGGATCTT
CCGAAGTTAAAGACACAGGCGCTCATCAACCCAATCTTGCAAGCCATAAA
CTTTGAGACGCCCTCCTACATCGCCCATGGTCACCTCAACACTCTAACTA
AAGATAAAATAGTGTCGTTTTGGCTGTGGTATCTGAACAATGACCTGTCT
TTCAAAAAGGTGTTTGAAGCCAACAATCACACAGGCGTGCAGATAGAGAA
ATCTCAATACGCCGGGTACGTGGATCCCAAAATGGTCGACGTTACGACCG
TTAAGAAGGAAAATATCAAATTTCCTGAGATTCCGAACATCGCGACCATT
TTAGATCCCCATTTTGCCCCATTAATGGCAGACGACGCTGATTTGAAAGG
TCTCCCACCGACGTACGTGATGACGTGTGAGTACGATGTTTTGAGGGACG
ATGGTGTGATGTACGCCAGAAGGCTAGGAAAGGCTGGGGTTGAGGTCAAT
CATGATCATTATGAACATGGCTTCCACGCATTTTTAAACAGCTTTGATGA
TTATGAGTTAGCAGGTATTGCTATGCAGAACTACCTAGCGTATCTAAAAA
AGATCCTATAAAATCAAGATATGATGATAAAGGCTCAAATCTGTTCACAT
TTCATTCCGCTTGATCCAAAGAATCAAATGCAATTAATCCTAATCGCAAG
TACATTCTAGGAGGAGATACTGTACCTCTTTCATACTTATGTCATGTCCT
GCAACATTATCTGAATATCTAGACCAATATATCTATACATCTTAGTCATC
TATGCAAAAAAGAATCCGTGAAATAGCGATTTGTAATTGTATAATTGACA
TATACGACTCCCTATTGTATCTGCTATTGATATTATCTACCTCTGACAAT
ATTATATAGATGGAGCATTGTACAGCCTAGAACCTAACCATTGTATAGCA
TAGAACCTCCCTGTAGCTTTTAGTAGTTTGATATAAGTAGCCAGTAGTAT
TTTATTGTTTGCCTTACATTGTACCTGATACAATCGTTGTGCAATGAACT
TTGACTTTGACTTGACTATATCTGCTAAATACATCAAAGAATGTTTAGAC
CTTAGAATAAGTACACTAAACTAAAAGTGTTGATTTATCTATCTACTTGT
ACGTATCCATTTGTTTGTCTGTATGTATGTATGTCTGTATAGATGTAAAA
GACCGTACAAAATACGTCGCTGTACTTTAGTGTCAATAAAGATTTGCATA
TAAGCCACGTCAAGTCAACTTCGGCCACAG Coding sequence (CDS) from alignment at Sc0000011:5263691..5269370- >transcript:BL97473_cuf12 ID=transcript:BL97473_cuf12|Name=transcript:BL97473_cuf12|organism=Branchiostoma lanceolatum|type=CDS|length=1203bp|location=Sequence derived from alignment at Sc0000011:5263691..5269370- (Branchiostoma lanceolatum)
ATGGCGGTGAAGGCAGCCCTAATGTTTGTGGCGGTGGCGGTTCTGCTGGC
GTACTACTGTGACCAGCCTGTTCCAGAGGGCATCGCAGAGCCACGGATGT
ACGCAAAAGTGCAGGGGATGGTGTTCAGAATATCGGCGAACCTGGCTAGA
ATCGGAGAGTACCTCGGTGTAGGTACGGAGCCTCAGAACCTCCGGTCAGT
CATGGGGGCAATAGTAAACGTTGGTCTGAAGTTAAAAGGCAGTTCTTACC
GCGAGGGATTGAAGGTCACAGACACCATGTTTGACGGGGTCAAAGTCCGT
GTGTACGAGCCAGTGTCAGCAGCACAGAGTAGCAGCAAAGTGCCGGGGCT
GGTGTACTTCCACGGAGGGGGCTGGGTTATCCTGAATGTCGACACCCACG
ATCCGCTAACGGCTCATGTTGCCAAACAACTGGGGACTGTTGTTGTGTCC
GTGGACTACAGACTCGCTCCTGAGCACGTGTTTCCGGCAGCGTTTGATGA
CAGTGTTGCTGCCACAAAGTTCTTCCTCCAGAATGCAGAGAAGTACAACG
TTGATCGCACACGTATCGGCATCAGCGGGGACAGTGCGGGAGGGAACCTT
GCTGCAGCCGTCACTCTCGCACTCGCTAAAGAAGAGGATCTTCCGAAGTT
AAAGACACAGGCGCTCATCAACCCAATCTTGCAAGCCATAAACTTTGAGA
CGCCCTCCTACATCGCCCATGGTCACCTCAACACTCTAACTAAAGATAAA
ATAGTGTCGTTTTGGCTGTGGTATCTGAACAATGACCTGTCTTTCAAAAA
GGTGTTTGAAGCCAACAATCACACAGGCGTGCAGATAGAGAAATCTCAAT
ACGCCGGGTACGTGGATCCCAAAATGGTCGACGTTACGACCGTTAAGAAG
GAAAATATCAAATTTCCTGAGATTCCGAACATCGCGACCATTTTAGATCC
CCATTTTGCCCCATTAATGGCAGACGACGCTGATTTGAAAGGTCTCCCAC
CGACGTACGTGATGACGTGTGAGTACGATGTTTTGAGGGACGATGGTGTG
ATGTACGCCAGAAGGCTAGGAAAGGCTGGGGTTGAGGTCAATCATGATCA
TTATGAACATGGCTTCCACGCATTTTTAAACAGCTTTGATGATTATGAGT
TAGCAGGTATTGCTATGCAGAACTACCTAGCGTATCTAAAAAAGATCCTA
TAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000011 | genome | Sc0000011:5263691..5269370 - |
Properties
| Property Name | Value |
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| Transcript id | BL97473_cuf12 |
| Biotype | protein_coding |
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