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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97475_cuf2 >transcript:BL97475_cuf2-protein ID=transcript:BL97475_cuf2-protein|Name=transcript:BL97475_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=391bp
MLYSYDWISVPLVYTQVVTVAVYTFFVSCLMGRQWLDPAKHYPGHEVDLY
IPIFTILQFLFYMGWLKVAEQLINPFGQDDDDFETNWCIDRNLQISYLAV
DDLYMTNPTLERDMYWNQPDPELPYTEASISNRVMTEPFLGSTFDMRLNV
QNMEFTNLHTVAEEPDDNQDSSSTSDNTPVPVPTIVFTEEEDPGKNTTFP
HSSSAPSSPLMSKNAAKSRPRASPRSLRKALLTSKTRAKMEESSLRLKKL
DKKRPLSWGGRCGDDSRSAHRDGPIVTSTEENIADITDAQGHVTNRLEVP
NSQGWGEESVWTEDEGKPLLQVREPPKTHAEAGVWIASRGPGAGPRDHLP
TQDGGPHKTHKHNATNTKDSTRGKNHVLRVDDAELDTVQRL Run BLAST on NCBI mRNA from alignment at Sc0000011:893251..898375- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97475_cuf2 ID=transcript:BL97475_cuf2|Name=transcript:BL97475_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=5125bp|location=Sequence derived from alignment at Sc0000011:893251..898375- (Branchiostoma lanceolatum)
GTTAACATACACTGCTAGTACTGTGGTGAGCTCTGTTGAAACCATACGTT
TGAGACGTTACCATGACGACGTCCTACAGTCTGAAAGTCGCCGACGCCCG
TTTCGGGGGGTTCGTCCGCCTGCTGTTCCGGTGGCAGGCCAGCTTCTACA
AACTTCTCTACAAGGAGCTACTCGTCTACCTTGCGCTGTACTCCGCCCTA
AGCGCCACCTATCGGCTCGTCCTGAACGACAGGCAGAGGGAGTATTTCGA
AGACATCAGCTTGTTTTGTAACGAGCACACGGATCTGATCCCGGTGGCGT
TCCTCCTCGGGTTCTACGTGTCCGTGGTGTTCACGCGCTGGTGGCAGCAG
TACACCTGCATTCCCTGGCCGGACCGCATCGCGGCGCTCATAGCCTGCAG
TGTGCATGGGGAGGATCACAGGTATGGGGTTTCATGGGGTCTGCATGTGG
GATTAGAAATTACGTACAATTCTTGTCGGTCCTTATGCAATTTGGCAAAT
CAGAAACGTCCTCACATATCAAGTTGGATTCAATAGGTGGCATTTTGTTT
CTAATCTGTGCCATGACCTTCCCCAGAGGTCGTCTGATCCGGCGGACCCT
GGTACGTTACGTCAACCTGGCCACGCTACTGATCATGCGCAGTATCAGCA
CAGCCGTCTACAAGCGGTTCCCCACCATGAACCACGTGGTGGAGGCAGGT
GGGTAACTCATGCTGTAAGACTAATCAATAAATCGATTGATCAGTCAATA
ACTCAATCAATTAATCAGTAAATAAACCAATGACATTAATCTGTGCCAAA
TACGCCAAGCCCGATTGTCAAGCAAAGAAGCCGTTTCTACGTAATACAAA
ATAAATAGAGCCAGACGTTTCAGATAGCATTGAGAATCTTTCATCAGTGA
CTAAGAAACTTAAATTCCAGTTGCTCGATTTAATTTGCATTACGAAATAT
TCTACCTGGATGTCTAACCTTCATCGACAAACACCCTATTCTCTATCATG
ACCAACATGGCGGACTTTACTTGCGCCTTATATAATTAGTTACCTGATTG
AAAACACCCTGTTGTCTATCGTGACCTCCAGGGTTCATGATGCCCGGCGA
GCTGAAGGACTACGACAAGCTGGACTCGCCCCACAACAAGTTCTGGCTCC
CGCTGAACTGGTTCTGTAACCTGGTCACCAAGTGCCGCAAGGAGGGTCGT
GTGGAGGACCCCTACACCTTCAGATCGCTCATCGAGGTCAGTTAACGTCC
TGTGACTTTGGATGAACTTGTCGCTTCCTGTTTGAAATTGTTTGTTTATT
CCTTGTTGGGGGGCAAGGAGGGCAGGGAACCAAAAAAAACTGCACTCAAG
GTCACCAACATACGATACCACTAATAACTTTGTTGCACGAAACAAATGGC
AACAACAGAATTTCATTATAGATGTCGTGTTCAGAAAATGGTTTGAATTT
GTGAAATATTAGTTTTTTTTCTCATGCAAGGCACCGGGTTTTACAAAAGT
CTGTAACTTTTCAGCAAATTCGACCATCGTGCGAAGCGTAAGATTCGTGA
AGTCATTATATTTCCTGTGGACACTTAACAACAAAGTCATGAAGTTTTAT
CCCATTATAAGAACCTTATGAAACAAAAGACACTTTTGCAACCATTCTAT
GGCGAACAGTAAGCCCACATCACCCCTCCTCGCTCCTCCCGTGTGCATGT
GAATTGCAATGTTGACCACCTTTCTTCCTACCATCAGAGGCGACCATCTC
GGTCTCTCGCAGGGCCGTTACCATGGTTACCGTACAGAAAAGCGTTTTTT
CCCTCCTCTGCCGAGGGAAAGGCGGTGGTTCGTAAGTTAACTTCTTCCTT
CCTCCCACAATCATGATATTGCATCTTAAAGTCCATATTGTTTAAGAAGT
TCAAATTCGTTTTGTAGTCTCGAGGGAGGTCCAACTTTAATTGTTATGGG
GATGATTGTAAAATAGAACTGTTTGATCAGTCGGTTCGCTTGTGCCTGGG
TGGCGTTACGGGGTAAAGTAGAAATTAATTCTACCTTTATTTGATAAAGG
TTCATAAAAGAAACGCGTCAACGCGCAGCTGTTAATATTATCACATGTTG
GGCACGCATGCTTGCTTGTAGTAACTTCTCTTCTTGTTAGTAAAGTTTGG
AAAGACGGTAACAAACAATAAGGATTGTTGAAAGTAATCATCGCTAAAGT
AGACAAACGTAACCCGCGATAGAAAAGGCAGCTTGAAGCTTTCGCAAATG
TCAGGAATGGTACATTTTTCGAAGACGACGACAACAGAGCGAAGGGGCTG
TTCAACAAGGGGTAAGAGTTTGCTTGTTTGCCGTTATCGAGACAGTCTTA
AGCCTAGAACACATATACATCCGTGACTGATTGGGCGGGTTTTGTCTTGT
TTGTTTCTTGCTTATTTTTCAGGAGTCGAACAACATTCGGGGATGTCTGG
CGATGTTGTACAGCTATGACTGGATCAGCGTGCCGCTAGTTTACACACAG
GTATATACTCAGCTCTTAACACACACACACACACACACACACATGCAAAC
ACACACACACACACAGTCACACACACACACACACACGCACACACGCACAC
ACACATGCACACGAACGCATACAACCACGCTACAGATACGAACACACACA
CACAGGCACACACGCGCACACACACGCACACAACCACCCTACAGATACAA
ACACACACACACAAACGCACACACACGCATACAACCACCCTACAGATACG
AGAAAACACACACACACACACACACACACACACACACACACACACACAGT
CAAACCCTTTTTAGCGCTGTCGTATCAACTGCTAAGGTACGTTGTTCTTT
GGACAATATACAGTACTATTTATGAGGTGGAAAAAAATTTTTCTCATCCT
GGGACTAAACAGGCTCAGCAAATGGTGCACACGTACCCCCGTCCATACCC
ACAGATTGAGCCAGAAGCGGTGTTTACCTAACCCCCTGTTACACCCCCAG
GTGGTGACTGTTGCCGTCTACACGTTTTTCGTGTCGTGCCTGATGGGGCG
GCAGTGGCTGGACCCGGCCAAACACTACCCTGGGCACGAGGTCGACCTGT
ACATCCCCATCTTCACCATTCTGCAGTTCCTCTTCTACATGGGCTGGCTC
AAGGTGGGTTTGTTCCTCCCGCTTAACTGGTAAACCGCCATAACGCGTGG
CACACCAGTTATGTACAGTATATTCTGCAGATTTCGTCCCGGAAGTAAAA
TATTTACATATATACAGGGACTTTTGGGACCGCTTCTGTAAGCAGTGACA
CCTATAGCTGCAGTACACAGTGAGCCAGTCAGAATTGCCCTCAGGAAGGT
GGCAGACGGTCGCCGAACGTTGGTTTAATAAAGCACTTGGCTGTGTACAG
TCTTTTAATTCAGATCTGTGTACAGAATTTTGATAGACACGCCCATGGAT
TACGTCATTTTTTTACCGGCAGGTCGCGGAGCAGCTGATCAACCCGTTCG
GCCAGGACGATGACGACTTCGAGACGAACTGGTGCATCGACAGGAACTTA
CAGGTAACAAGATTTATCTCAACCTTCAGCCGCGTTCTAAGCTAGAGTAG
AACTCTTAACCGCCCTTTCATGGCAGGCCCGATGATGATGATGATGCCTA
TCGTACTGACATGCGATCCAACCCTCTCGTTGCGTTAGCACTGGGCAGCC
AATCACGTCGCCTCCTTCGGTCAAGAGGCAACGTGATTGGCTGATAACTT
CCCCACAAACAATGGGATCCCGGGCTATGTGATTGGCTGACCAGCTTTAA
GGCAACGAGAAGAACAGCCAGATTGCTTTTGTTGTTTGTTGTTCATAACA
GATCTCGTACCTTGCTGTGGACGACCTTTACATGACCAACCCGACGCTGG
AGCGGGACATGTACTGGAACCAGCCGGACCCGGAGCTCCCCTACACCGAG
GCCTCCATCAGCAACCGCGTCATGACAGAGCCGTTCCTAGGGTCAACGTT
CGACATGAGGTGAGGCCGTGGGGTTCTTAAAGATATTTTTGGCGGCACCT
CAGGGGCGAGCCTAATGATATGCAGTCAATATGCAAGAACTCTAGGAGTT
GTACAGGAATGTGTCCACGGGAATTTTTAGTTCATAGGAATGTTTGGAAT
GTTAGCCCGCAGGAAACTGTCCACGGTGGTAACATCAGAAACTGCAAAGG
ATAGAAAGTAGCTAATTATAACAGTTTCACATAGCCAGTCATATGGTTTA
TTTTGGAGGAACCTTCGACTAAATGATGTTGTCAAAATCCCCCCCCAGTA
TACTATTGCGAATACATGAGCACTGCCCCTTTATTCTCGGGAGGGTTATC
GCGCATTTACTTTATCCTAATTGCTATTCTAATTTCATAGGTTAAACGTG
CAAAACATGGAGTTCACAAATCTGCACACCGTGGCGGAGGAACCCGATGA
CAATCAGGACAGCAGCAGCACTTCGGACAACACGCCGGTCCCCGTTCCTA
CCATAGTGTTCACCGAGGAGGAAGATCCCGGTAAGAATACGACTTTTCCG
CACAGCTCGTCCGCTCCATCGTCTCCTCTCATGTCTAAGAACGCCGCCAA
GAGTCGACCTCGCGCCTCGCCAAGGAGTCTTAGGAAAGCCCTGCTGACTT
CTAAGACGCGAGCAAAGATGGAGGAGAGTTCTTTAAGACTGAAGAAATTG
GACAAAAAGCGGCCACTGTCTTGGGGCGGTAGGTGTGGAGATGACAGTAG
GAGCGCACATCGGGACGGCCCTATAGTTACCTCAACTGAGGAAAACATCG
CGGACATCACAGACGCACAAGGACACGTCACCAACCGTCTGGAGGTACCC
AATTCGCAAGGATGGGGGGAGGAAAGCGTCTGGACTGAGGACGAAGGAAA
ACCGCTTCTCCAAGTCAGAGAACCGCCAAAAACACACGCAGAAGCCGGGG
TGTGGATAGCAAGCAGGGGCCCGGGCGCTGGTCCTAGAGATCACCTTCCT
ACACAAGATGGCGGGCCGCACAAGACCCACAAACATAACGCGACGAACAC
GAAAGATTCGACCCGAGGAAAAAACCATGTGCTGCGTGTAGACGATGCGG
AACTTGACACTGTGCAGAGGCTGAC Coding sequence (CDS) from alignment at Sc0000011:893251..898375- >transcript:BL97475_cuf2 ID=transcript:BL97475_cuf2|Name=transcript:BL97475_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1173bp|location=Sequence derived from alignment at Sc0000011:893251..898375- (Branchiostoma lanceolatum)
ATGTTGTACAGCTATGACTGGATCAGCGTGCCGCTAGTTTACACACAGGT
GGTGACTGTTGCCGTCTACACGTTTTTCGTGTCGTGCCTGATGGGGCGGC
AGTGGCTGGACCCGGCCAAACACTACCCTGGGCACGAGGTCGACCTGTAC
ATCCCCATCTTCACCATTCTGCAGTTCCTCTTCTACATGGGCTGGCTCAA
GGTCGCGGAGCAGCTGATCAACCCGTTCGGCCAGGACGATGACGACTTCG
AGACGAACTGGTGCATCGACAGGAACTTACAGATCTCGTACCTTGCTGTG
GACGACCTTTACATGACCAACCCGACGCTGGAGCGGGACATGTACTGGAA
CCAGCCGGACCCGGAGCTCCCCTACACCGAGGCCTCCATCAGCAACCGCG
TCATGACAGAGCCGTTCCTAGGGTCAACGTTCGACATGAGGTTAAACGTG
CAAAACATGGAGTTCACAAATCTGCACACCGTGGCGGAGGAACCCGATGA
CAATCAGGACAGCAGCAGCACTTCGGACAACACGCCGGTCCCCGTTCCTA
CCATAGTGTTCACCGAGGAGGAAGATCCCGGTAAGAATACGACTTTTCCG
CACAGCTCGTCCGCTCCATCGTCTCCTCTCATGTCTAAGAACGCCGCCAA
GAGTCGACCTCGCGCCTCGCCAAGGAGTCTTAGGAAAGCCCTGCTGACTT
CTAAGACGCGAGCAAAGATGGAGGAGAGTTCTTTAAGACTGAAGAAATTG
GACAAAAAGCGGCCACTGTCTTGGGGCGGTAGGTGTGGAGATGACAGTAG
GAGCGCACATCGGGACGGCCCTATAGTTACCTCAACTGAGGAAAACATCG
CGGACATCACAGACGCACAAGGACACGTCACCAACCGTCTGGAGGTACCC
AATTCGCAAGGATGGGGGGAGGAAAGCGTCTGGACTGAGGACGAAGGAAA
ACCGCTTCTCCAAGTCAGAGAACCGCCAAAAACACACGCAGAAGCCGGGG
TGTGGATAGCAAGCAGGGGCCCGGGCGCTGGTCCTAGAGATCACCTTCCT
ACACAAGATGGCGGGCCGCACAAGACCCACAAACATAACGCGACGAACAC
GAAAGATTCGACCCGAGGAAAAAACCATGTGCTGCGTGTAGACGATGCGG
AACTTGACACTGTGCAGAGGCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000011 | genome | Sc0000011:893251..898375 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97475_cuf2 |
| Biotype | protein_coding |
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