XLOC_002683 (gene) - C. hemisphaerica

Overview
NameXLOC_002683
Unique NameXLOC_002683
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000048:116831..122836+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002683 ID=XLOC_002683|Name=XLOC_002683|organism=Clytia hemisphaerica|type=gene|length=6006bp|location=Sequence derived from alignment at sc0000048:116831..122836+ (Clytia hemisphaerica)
CATTCATCGTTCACACAAGTTTTGAATATTCATTAAGCTTAATAATATGC
TGCTCGACAACCAATGAAAATGTTCATATTTTTGGATCAACAATAACAAA
TTGATATTGtattcattttttaaatagaaTTTCATATTTATTTCAGAATT
TAGTTTTATTCATTGATTGTCTTTTGTCATAATCAGAATTTATGACTCCT
GAAAAACACTTTTCAAGCTTCTCTTAAAGAGGTATAAGACTTTACGGTGT
TGAGTCATGGGAAAAATATCTTATTATTTGTGTGTTATTTGTGCCATTGC
AATCTTTATCAAGACCATTTCAACACATAATATTATACGATTGCCAGCTA
CTAATGAAGgtataaaatttaatttaatttcatatttctttccTACTACT
AGCCTTTAATTTAAGCCTTTATAATCCGAATCTTTTGAAACTAAATTGAT
GATTTGAATCGTTCTATAATTCGAAGTAAAACAACAGTCCCTCATgttta
atttcttttgaaatccgttttttgaaattcgaatcctTCTTCAAATTTGA
AGGGAATTCTTGGTCCCTTTAAAGATCGAATTAAGGAAAGTCAACTATAA
CTCTATAATTCGACAAAACATCCGGTGTTTTTTTCGGTCATGTTAGCTCT
GACTGAATGTGAGCTCTAGTTTGTTAGACGACCAACTTTCTGCCCTGTCC
ATTCTAATTGTTAGAATAGGCAAAAAGTGGGCACATAGTTTACAGTCAAA
ATATTTGCTTGAAAAGGATTGAAAGAAgtcaatgcattgactttagacag
cccactttatgctcACTTCAATCCACAATTAAAATAGGAAAGgtgaaaag
tgggccgtcttaACTAGAGCTGACAGCAGCAATGTCTTAGTTGGAATTCT
GATGAAAAATGAATGGATATATGAATTAGTTGAAGTTTCCACCCTAATCA
AAACTCATGCTCataagaggcccccccagcggttggcgtgatggcgtgat
ggagggtttttcgtggcgtgatggcgtgaaatgttgaaaaaaacggcgtg
atggcgtgaaaatgaagtgccggcgtgatcgtgaaatcgagtttttttag
gcgtgatggcgtgaaatttgcagttNTAATTCACGCaaattcacaattaa
tgcccccccccctcaagttgcttgtacttttaaaagatttccattatttt
tacaggaattatttttcaaatttaattgaaatggatcctaaaatagcact
ttgaacccttcaaaattcaaaaattttctccgttacCCAACGGGGCTTTG
TTAATTTACTCAAACCGGTGCCCTTTGATGTAACCAGTTgtccaacaatt
tttgatatgcataagtcaagattacgtcatttttcctatcgaaaacaccc
gaaaaagCTGGAAATTACCCctgtgtattactaaaaatagaaaaacagag
gttaaatttcttccagatttttcgggtgtttccgataggaaaaatgatat
aatcttgacttactTACGCGTATGAGAATGCCGATGAAAAACTGANCGGC
CCCGACTGTGGTGGGGCCTCCTAtaaattagatttcattttaaaacataa
aagaaacggtgcaaacagttctaTTCATATGCCATACATCCTTGTAACTT
CCGATTGTTTTTAGCAGGTGCTAGCTAGTCTTTAAAATAAAGccgaatgc
tatgagagggtcgaaaattgaaaattttccccgtcagcgcaaaccatggt
tgcgcttcctccgtaactaacatttCCCTCTCTTTCTTAGATNGtttata
taacaaaaattaTGAGCATGAAAACTAAATGTAAATTTTAaaggcgtaat
ggcgtgaaatcgaaaaaaattggcgtgatcgtgaaaatcaaatttttcag
gcgtgatggcgtgaaatcgaaaaaaattggcgtgatcgtgaaaatcaaat
ttttcaggcgtgatggcgtgaaatcgaaaaaaaattggcgtgatggcgtg
aattttgggtccgctgggggggcctctcaTAAAATTCATCTTCGTAATCA
TATAAGATGGACAAGTGAAAAATTCGTAGCTAATATTAAAATCGACGGTT
TGGCCACCTCTTTTGGAAAACTATAAAGCTTCTAAATTAAAGGCATTGAA
GTAAATTTGACAAACTTTTGTCACCGATTCAGTGAGACACCCGACGGGAA
AAAACCCTACAATCTAAGCCCCTCTGggaaatttactttgatttcatctc
aATTAGAATTTCAATGTAAAAAGTtctactccaaaaccatccccactgga
ttgtTTGAGCTTAAATCAATAGAATTTCTACctacatttgaaattcaata
aaaattctAATCCTCGCTGTGGGGAAAGTTTCACCGGGGATGTGGGGCAG
GGGTTATTTGGAGATGAATTGTGAAACAGCATTCTGTTTACATTGGTATG
ATAACAACTTGCTAAATTTTCAATATCCTCAATCCTTAATCTTCAAACTT
TAGGAATCTTCTCACTTCGCAAGAAAAACAAACGCATTGCAACCACTGCA
TACAAAACATTCGAAGTGAACGAATTATTCGATTGCGCTGACGCATGCGT
GTATGATACTTCATGCAAATCCATCAATGTGGACAAGAGTAATCAACCCT
GGGTTTGCGAGTTAGTTGCGGATGACCGAAACACGAAAGACGAGTATGTA
GATGCTGAAGGTAGCTTGTTTTTCATGAAAACATTTTGGGTTAAATCATT
AGTACTCTTAAAAAACACGTGGCCTTCCAGCTCTCATACTTTTTTCGTAA
AATTACCAAATAAAATTGAGAATCAAATGAATATTTTCAGTATCGGAAAT
ATATACGGCCGTTGAGAATCGGTTTCAGCCTTCTAAAGGGttaagaaaac
aacaaaattaatGGTCAGAATCTACACCATCGGTTAGGAATAAAGTCCCT
TTTTCTCTaatttagtctctctaagggcaACGGTTCGTGGTTCTGGTCCA
CACATACGCGACAATTTGCAGCCCTCTTCATGGGTATTGTTACTCTGAAA
AGCCTTTATTTAAAAGGTGGAATATTCATTTCTTTTTTCGTTACAGGGGT
CGACCACTATGACACAGGATGGACTTCGTTGACTATCATCACAAACAGTG
CTCAAAATTCTTGCTTAATATCCGGAGGAAGAAGTTGTGAGTTAGGAACC
AGTACGAATTGGATCCATGTTCATGTAGAGACTGATTGGAATATCTGTCT
TACACATCGGGCCGCTTTGTTCAACTACGACCATCAAACAGGGCGACTCC
ACCACCACTGCACTGGCTACCCAGTGTGTGTTGATTTCAGTACCAAATGG
GTGCAGATCAATAAAAACGGATGCCAGCATTATCCTGACATTGAGCACTT
CTGGTTTACTTGGAGGCGAAGCTTTTGTaagttttgttaatttcataAAC
CAAGCCCACACGTCACACTTATTTAACAAGTTTCACACCATTGTGACACT
ATCATGCTCACAACTCTCTGAAACTTTTTTCGTTCTTACAGCCAATGAAT
TTTTCGTTCGTCTAAGTTTATCGTTCATAACATTAAGGACTGACTTAATG
TTacagtctctataactcgaacacgcaaggagaacgcaaatttgttcgag
ttaaaagaACATTCGAGAGCTTGAGTAGGGTTTATAAGgtatttttaact
gaagggactagaaaacttattcgagttaaggagacattcgagttaaagag
tttCAAATTAAAGAGACTCCATTATCATTTATTTTCAAGCTGGATATCTG
TGGATAAACAACTATTGTTTGGTGATTAATAATGGTAATTGGGTACAAGG
CGAACGAGTTCATGTCTGGAGTCCTTGCCATGATAACTATTCTGAAAGAC
AGTTTATTTTCAGATCCATCCGTAAGTATCTTTTACATTTCTTAAGTAGC
GATGACCGAGGGATCAAGGCATCAGTGTTTGAAATCACGGGCTCCCGGTT
TGAATCCCTGCTCTTttcaatgttccgttcagttcataaaTAGCCAAATC
GGTTGACTGTCTGGCCCAGTAAATACAATCaaaaaagtcctagattactg
ggctatccacgtaaaatattgacTTTAAATCATTAAAAGTCAGAGAAAAG
TCTTCTGTTTGTGACTTATGTACCATATATTAACTGTCGTTTAAGGTTGG
GACAATAATTTTTGACATCGTTTTACGGTTTTGCTCTCATAGTTAGTATT
GAGTCTGATAGCCTCGAATTCAACTATCATTGGTTCTTTTTAAAGCTCAC
GGTCCAGTCTACGTAACAGCATTCACCGGTCTACCTAGCTACGACATAGA
CAGTTCCTGGAACTCGTTTGTTGGGAACGGTAAGTTTCCAAACAACCCTG
ACTGGTTCGGATACCAAGATGACTTCCTCACACCTTCAAGTGAATGGTGA
GTTATCTGTTTAAATGCCAACTCTAACTTCGTTCGCCTGGTATCATCGGC
ACCGGTATTTTTATGCTTACCGATAGAGCCGGATAATCTCCTGACTTTAC
CAAAGTAGTTTAAATAAAGCTTGTTATACACAGGGACGAGGTTGAGCCAA
CTCACTTAGTTTCTGCAACTCcaatttatttcaaaacataACGTATCCTC
CATGCAGAGGAATTCCAAAGAGGACTGCacaaatccgtcaaaaataaccG
GAATCCATCGGGGTTGATTTAAAAATCTGGTAAAAGTCAAAATCACAGGA
GCTTTAAACCTAAAAGTTGAGACAAACCTTTGACTTCGCACTTTAAGGTA
TCGAACACTCTCTCAAATAATAAATTCATGCTCAAATGATCAACAACGAT
ATTGCTGATAATTCTATCACTTTTTCTGTCGATCATTTCCTTCAATCACT
AGGCGAGATCAGTATGGTATGCGCATGGAGGCATATTTCATTCCGCCAAC
AACAGGGAATTATCGATTCCGAATGGCTTGCGATAACATGTGCGAGTTTA
ACATAGGAGGAGATGATGGCACAACTTCTCATAAAACATTAGTGATTGAT
ATGCGAGCTCACAATTTATACACTGGAATGTTTTCATTCGATACGTAAGT
AATATTCacgacagctgattggttataagtttcaaccaatcagctgttgt
tTCCGTGGAATATCATTTTTCAgcagtaaactgttgaaaattccatcgaa
aatcactgattttcaaatatattaaatatttcactgaagttttaaatcta
gagtaaaacaatggataacttttgttttcgaatcatacctaaaattcttt
aaattgagaaataatgataaaaaattaacgccgcttttaggttaaaattg
taaaatattggTCCTTTTTACACCAGCCTTTTTAACGCCACGAGCACAAC
AATAACGCCAATAAAGGTTGGTGTTCCGATAAATGACCGATAAAGTATCc
aagaaaattcaattttatcttttctattttttgatattttaggcGCTAGA
AGAACCTTTTTGGCTTTTCATAaatgaattatttttaattgtCGATTGAT
CTCTACAATTATTTGCAATTAGTATTCACCCCTTAAATTTTcctaattta
aattttaaaatttgtttaacTTCAGATACACCCAACAATACAGTGGGCAC
CATCATTTGCTTAAAGACAAACAATACTATGTCGAGTTATTGCTTCGGGA
ATGGGGTGGAGGTGATCATGCCGAAATCGAATTTCTTGAACCCGATCGGA
ATACATGGATTCCGATGACATCCCGATTTCTCAGAAAGTGCCGGTAATGC
AATGGGTCAAGAATTGATATATGAAGGATTCATATTAtgcacttttgaat
ttttgtttcgaaataaAGGGTAGGCCTAAAACCTTTTACTTGAAATTGGT
CTTTGAAATTCATCCAAGGACCTAAATTGTTTGTCCCATATAGAAAGATG
TATGTCAGACAAAATCAAGTTCCCCTAGAATTTATCCAGATCTCTCaagt
tttcat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004738TCONS_00004738Clytia hemisphaericatranscript
TCONS_00004739TCONS_00004739Clytia hemisphaericatranscript
TCONS_00004740TCONS_00004740Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004739-proteinTCONS_00004739-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:116831..122836 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.13	0.05	0.06	0	0.04	0.03	0.1	0.02	5.3	4.09	1.43	0.95	1.07	1.76	14.22	12.53	2.53	2.22	0.12	0.33	0.53	0.67	0.14	0	0.03	0.03