XLOC_002827 (gene) - C. hemisphaerica

Overview
NameXLOC_002827
Unique NameXLOC_002827
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000050:128802..135067+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002827 ID=XLOC_002827|Name=XLOC_002827|organism=Clytia hemisphaerica|type=gene|length=6266bp|location=Sequence derived from alignment at sc0000050:128802..135067+ (Clytia hemisphaerica)
actggctgaaaaaatcctaccgggtctgtgagaagggggtgtataacaTC
GATCTTTGAATTTACGTAATTATCAAAAACTTGTTCATACTTTCTTTTCA
TTGAAGAACATAATATAAAAGGAAGACGAGGAAtggaaaatccaaaaaaa
tgtaTGAAATGCTCGAACCATGGTACAAAGAAATGTGGGCAATGTTTACA
AGTATATTATTGCAGTAGAGATTGTCAGATGGCTCACTGGAAAATCCACA
AACCCTCTTGCAAACCGTGCAATAAACCCAAAGGGGCGTCCACTGAGAAA
CGAAAGGAAAGTAAAAATATGAAGCGTGCCAAAACTATTTATGTTAAGGC
AGGTTCCTTTGACTCTTACGACGAATTTGATGCAAAGACTGAATTATTTG
AATTGGAAAGTTATGGGAACGAGGCTGGAGAGATGAAGGAGATTCGTTCA
CGATTCGGTTGGAAGGATGTATCAGGGACTCGCTATAAATTTTATTCACc
aaatgaaattgattttcaatgGTATTATTACATTTATTATGATGATACTA
GAAATAGAGTGAAAAGATTTTCTGATGAAAATGTGTTCGCATCTGGGTGC
TGTTCTTCAAAAATCtatggtgacgtcatcattcttCGTAGTGGACCCAT
GGGTAGCAATTCATACGATGAATCAATTTCTGTTAAAGACTTGTatgatt
gttttgaattttatcagACTCACAACTCAGTGAAAGTTTTCCAGCAACGA
GAGTATAAAAGATGTATGCAATCTTTTGGAGTTACTGGTGGGCAGCAGCC
ATCATGGCAGATGGGTGAATCTTTTAAATATggtgaaaacatttttgttt
caaagataCTTTAACGTTTCTTCTGTAACCAAGAGATACTTACCCAATAG
AAAACATTTCATCTTCAAGTTTTGTTGTGTTTGTGTTGGATttcttgttt
taaatattttgttaatatttcttCCTACCATTTGTAGAATGTCTTTTGAT
ATTTGAATGTACAGTTGgttatttataaaatattggatAGACCACAGAAT
CATTATGTCTTCAAAGTTAAAGTCCAAAAACAGCTGTAATTCGCATTCGC
CGTATCTAGCAGGATCTACTTTTGGTCATTTCCACTGCTTTTCAGCCTCT
AAATTATGTCTGTTAAGGTTAAGGGCCAATATTTTGTCGAATTTTTGTTT
AACAGGAACATTAAATAAAATAGGTTGTTTTATCTTTCGAACGATACGTC
TTCGTCGttttaaaaataccaaaagacTGACTTGTGGAACTTTATCTTTG
CGAAAAATATACTTTCCTCAAAATCTGTTGTTGGatagaaaataactttt
ttacaAAGATACTTTACCGAATTGTTTTCGCNGGAAAGTTATGGGAACGA
GGCTGGAGAGATGAAGGAGATTCGTTCACGATTCGGTTGGAAGGATGTAT
CAGGGACTCGCTATAAATTTTATTCACcaaatgaaattgattttcaatgG
TATTATTACATTTATTATGATGATACTAGAAATAGAGTGAAAAGATTTTC
TGATGAAAATGTGTTCGCATCTGGGTGCTGTTCTTCAAAAATCtatggtg
acgtcatcattcttCGTAGTGGACCCATGGGTAGCAATTCATACGATGAA
TCAATTTCTGTTAAAGACTTGTatgattgttttgaattttatcagACTCA
CAACTCAGTGAAAGTTTTCCAGCAACGAGAGTATAAAAGATGTATGCAAT
CTTTTGGAGTTACTGGTGGGCAGCAGCCATCATGGCAGATGGGTGAATCT
TTTAAATATggtgaaaacatttttgtttcaaagataCTTTAACGTTTCTT
CTGTAACCAAGAGATACTTACCCAATAGAAAACATTTCATCTTCAAGTTT
TGTTGTGTTTGTGTTGGATTtcttgtttcaaatattttgttaatatttct
tCCTACCATTTGTAGAATGTCTTTTGATATTTGAATGTACATTTGgttat
ttataaaatattggatAGACCACAGAATCATTATGTCTTCAAAGTTAAAG
TCCAAAAACAGCTGTAATTCGCATTCACCTTATCTAGCAGGATCTACTTT
TGGTCATTTCCACTGCTTTTCAGCCTCTAAATTATGTCTGTTAAGGTTAA
GGGCCAATATTTTGTCGAATTTTTGTTTAACAGGAACATTAAATAAAATA
GGTTGTTTTATCTTTCGAACGATACGTCTTCGTCGttttaaaaataccaa
aagacTGACTTGTGGAACTTTATCTTTGCGAAAAATATACTTTCCTCAAA
ATCTGTTGTTGGatagaaaataacttttttacaAAGATACTTTACCGAAT
TGTTTTCGCCGACAAATTTGACAAGAGTAACGTCTGCTTTTGGTTTTAGG
TATTCTTTCATATttagacttcgtgagcaaaacatacatctatctcatct
aaaatttgagtaatttggTTAGGAACATTGATCGaagcttataaatagtg
attcttatggatGAAGTCGATTTTTGAGGAGAAAATTATATCTGTGAAAA
TCTGCTCCAGCCATCgtttaacacccccttctcaccgaCTCACTGGAata
tttggccaaaatatcgcccCCAGTAGAAAATTATACTACAATCTTTGttc
cgctgaaaataatcaaataaaccaatcctcgccgcaaaatattatgctaa
atgttccatccccactgaattttgtgactcgaaaacaatggaatttaaat
cccaggccataaaaaatatcaaaataacgaTCCTCAGCGAGTTTCAgtca
aaacaagtgatacttttatggacctacctggttatgcatttaacacatat
ataatttaTATCTACGTGAgaatgaacgttaaacaatcattcagaacaca
aatagtgacgatttattaaaattaatcgtttgtttcttacaaaaaaaacg
tttagaaaccaaaatttcatgctcttgaaatattctttcatattcaagac
gttttttgagctgaaaagttttcttacaaaaatctgcttgacccatcttt
tacctactctcatacaaaaaatccatatttcacaaagtccaaaaaacccg
ctttttagccgttttttggcccaaatttgcccaaaaaattttttattcga
aaatcaggctccgtccaCATTTTGGCCACCGCCGTTTTGCAcatttgtac
caaaaatcaaatgattcctatgattcaatctcgatgaaaagctggtaacg
aacggacggacggacagaggtgaatttatagaaccttcaccccaccgggg
taggtccaaaaaaaatcctataccgggtctgtgagaagggggtgtataac
aTCGCCCTTTGAATTTACGTAAttatcaaaactttttcatACTTTCTTTT
CATTGAAGAACATAATATAAAAGGAAGACGAGGAAtggaaaatccaaaaa
aatgcaTGAAATGCTCGAACCATGGTACAAAGAAATGTGGGCAATGTTTA
CAAGTATATTATTGCAGTAGAGATTGTCAGATGGCTCACTGGAAAACCCA
CAAACCCTCTTGCAAACCGTGCAATAAACCCAAAGGGGCGTCCACTGAGA
AACGAAAGGAAAGTAAAAATATGAAGCGTGCCAAAACTATTTATGTTAAA
GCTGGTTCCTTTGACTCTTACGACGAATTTGATGCAAAGACTGATTTATT
TGAATTGGAAAGTTATGGGAACGAGGCTGGAGAGATGAAGGAGATTCGTT
CACGATTCGGTTGGAAGGATGTATCAGGGActctttataaattttattca
ccaaatgaaattgattttcaatgGTATTATTACATTTATTATGATGATAC
TAGAAATAGAGTGAAAAGATTTTCTGATGAAAATGTGTTCGCATCTGGGT
GCTGTTCTTCAAAAATCtatggtgacgtcatcattcttCGTAGTGGACCC
ATGGGTAGCAATTCATACGATGAATCAATTTCTGTTAAAGACTTGTatga
ttgttttgaattttatcagACTCACAACTCAGTGAAAGTTTTCCAGCAAC
GAGAGTATAAAAGATGTATGCAATCTTTTGGAGGTACTGGTGGGCAGCAG
CCATCATGGCAGATGGGTGAATCTTTTAAATATggtgaaaacatttttgt
ttcaaagataCTTTAACGTTTCTTCTGTAACCAAGAGATACTTACCCAAT
AGAAAACATTTCATCTTCAAGTTTTGTTGTGTTTGTGTTGGATTtcttgt
ttcaaatattttgttaatatttcttCCTACCATTTGTAGAATGTCTTTTG
ATATTTGAATGTACATTTGgttatttataaaatattggatAGACCACAGA
ATCATTATGTCTTCAAAGTTAAAGTCCAAAAACAGCTGTAATTCGCATTC
ACCTTATCTAGCAGGATCTACTTTTGGTCATTTCCACTGCTTTTCAGCCT
CTAAATTATGTCTGTTAAGGTTAAGGGCCAATATTTTGTCGAATTTTTGT
TTAACAGGAACATTAAATAAAATAGGTTGTTTTATCTTTCGAACGATACG
TCTTCGTCGttttaaaaataccaaaagacTGACTTGTGGAACTTTATCTT
TGCGAAAAATATACTTTCCTCAAAATCTGTTGTTGGatagaaaataactt
ttttacaAAGATACTTTACCGAATTGTTTTCGCCGACAAATTTGACCAGA
GTAACGTCTGCTTTTGGTTTTAGGTATTCTTTCATATttagacttcgtga
gcaaaacatatacatctatctcatctaaaatttgagtaatttggctaggA
ACATTGATCGaagcttataaatagtgattcttatgaATGAAGTCGATTTT
TGAGGAGAAAATTATATTTGTGAAAATCTGCTCCAGCCATCGTTTAACAC
CCCTTCTCACCGACTCTCTGGAatatttggccaaaatatcgcccCCAGTA
GAAAATTATACTACAATCTTTGttccgctgaaaataatcaaataaaccaa
tcctcgccgcaaaatattatgctaaatgttccatccccactgaattttgt
gactcgaaaacaatggaatttaaatcccaggccataaaaaatatcaaaat
aacgaTCCTCAGCGAGTTTCAgtcaaaacaagtgatacttttatggacct
acctggttatgcattNcatttaaatccccagccataaaaaatatcaaaat
aacgaTCCTCAGCGAGTTtcggtcaaaaaaaaaatcctataccgggtctg
tgagaaaggggtgtataaCATCGCTTTTTGAATTTACGTAATTATCAAAA
ACTATTTCATACTTTCTTTTCATTGAAGAACATAATATAAAAGGAAGACG
AGGAAtggaaaatccaaaaaaatgcaTGAAATGCTCCAACCATGGTACAA
AGAAATGTGGGCAATGTTTACAAGTATATTATTACAATAGAGATTGTCAG
ATAGCTCACTGGAAAATCCACAAACCCTCTTGCAAACCGTGCAATAAAGC
CAAACGGGCTTCAACTGAGAAACGAAAGGAAAGTAAAAATATGAAGCGCG
CCAAAACTATTTATGTTAAAGCTGGTTCCTTTGACTCTTACGACGAATTT
GATACAAAGACTGAATTGTTTGAATTGGAAAGTTATGGGAACGAGGCTGG
AGAGATGAAGGAGATTCGTTCACGATTCGGTTGGAAGGATGTATCAGGGA
ctctttataaattttattcACCAAATGAAAGCGATTTTCAATGGtattat
tatatttattatGATGATACTagaaatagagcaaaaaattttctgatgaA
AATGTGTTCGCATCTGGGTGCTGTTCTTCAAAAATCtatggtgacgtcat
cattcttCGTAGCGGACCCATGTCGGGTATCAATTCATACGATGAATCAA
TTTCTGTTAAAGACTTGTAcgattgttttgaattttatcagACTCACAAC
TCAGTGAAAGTTTTCCAACAACGAGAGTATAAAAGATGTATGCAATCTTT
TGGAGGTACTGGTGGGCAGCAGCCATCATGGCAGATGGGTGAATCTTTTA
AATATggtgaaaacatttttgtttcaaagataCTTTAACGTTTCTTCGGT
AATCGAGAGATACTTACCCAAGAGAAAACATTTCATCTTCAAGCTTTGTT
GTGTTGCGTTAAGTTTCTTGTTTTGAATTCTTTGTTAATATTTCTTCCTA
CTATTTGTAGAATgtcttttgatatttagaaTGTACATTTGgttatttat
aaaatattggatAGAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004979TCONS_00004979Clytia hemisphaericatranscript
TCONS_00004980TCONS_00004980Clytia hemisphaericatranscript
TCONS_00004981TCONS_00004981Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:128802..135067 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.74	39.36	26.66	21.95	3.11	1.98	3.48	3.74	3.04	4.15	4.87	3.8	4.16	2.93	2.41	3.34	3.47	3.33	1.75	2.62	3.24	3.41	14.98	11.28	15.23	15.29	14.21	10.31	7.99	8.63