XLOC_003771 (gene) - C. hemisphaerica

Overview
NameXLOC_003771
Unique NameXLOC_003771
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000070:170399..175578+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003771 ID=XLOC_003771|Name=XLOC_003771|organism=Clytia hemisphaerica|type=gene|length=5180bp|location=Sequence derived from alignment at sc0000070:170399..175578+ (Clytia hemisphaerica)
AGAaaagagaaattcaaaaatgcaCTTATCTGTTATAAAGGTGCTTTAAA
AACAGCTGGTAAAGATTACGATTCTACAGCATCTGCGGCCAAAAATTACG
CAAAAGCTTCCAATGAGCTTTCCAAATTGCTGGAAGACAATGATATAGAG
AAACGGCAATGTCTTATAGATGTTATTTCACACTATCAACAAGCACTCGT
ATGTGGAAAAATCACAAAGTCAGCCTTATGGATCGATGATATAACATGCT
CTCTCGGGAAAGTACTGCAAGAGGCGTTGAATATATACGCTGATCTGCCA
GCTGaagaaaaaatcaatgtttaTGAGTCATTTGCCTGTAGTTTAACAAA
TGGGTTTTTCTCTGATGATTTGTATGTTGAAATTGCAAATCTCCTTCTCA
GCCAAGCAATCAATTCTcttcaattaaaaaattttaaagaaagtaaaatT
TGTCTGCAACGAATGAGCCGCCCAATTGAAGAACTTAAGCGGAGTAAAAC
GCCCGAGTTTACAGAACAAGCAGAGACGTTGAAATTGGATTTGAAATATA
ATTTGGCGTTCACAGAATCTCTACAAACTATCCGTATAGGTAATTTTTAG
GAGTTTTAACGctcttttaaaatttctaaatacaATTAAAGTGGTTTCAG
TGGTCTACGTTAAGGGAATTTCCGTTCGAAAGAAATTTGGTGGATTTGAC
GCTTTTAGCGAAAATTGTTTTTCTATCATCTGACATATTAAACTCTCGCC
AAAATTCGATTTTTCCAGCCATCTGCAAATTTAAGTTACCCTTTAAAATT
CCTTCCTTTAAGCTACAATGAAAAACTTAAAAGCTTTTTTGCACATTTGG
GGTTTTAGGAGATGAGCTTTTGGAGAGCCATTTGAAAGACCAGGAAGACT
TGAGCATGGATATGGTTTATACCGTAATTGACCGGTATCATGAAGCGATG
GTGTTGGCTAGAGATATTGAGGTACGTACAAATTAATTTGCTACTTAACA
GTTACAGTAGCAAAGATTTATAGTTCAAACCACGAACCATTTTTTTAGGA
TACGAGATGCTTTTGCATTTAAATTTGAACAATCAGAACCCGAATTCTCA
GTTTAACCTTTAGTCCGCGAGGGACGCGTATACGCGTTCAGATGAATGTT
AAAGTGATAATAGGGGCGATATATGATATCATTAACGCTGGTTATGAGCA
GAATACTTTCTACAATAGACTTTTGAAATAGTCATTGAAATGTGTCCCTT
TACAGTCCCTAAAAATCATGCTCGAAAGAATAATTTAATTCTTTCTCAAT
CCTAACCTAATTCTTCTTCAGTGTGGTGTAATTTGGATGACCTGAAAACT
ACAGTGTAAACGCGCCCATTGTTTTACCATCAACACAAAATCATGTTTTT
TTCTGgttaataagagacaaagatcGTGCAATTCTTTGTTCCAATATTTT
CAAGCAACAGTGAGAATACACCCTTATTCTATTTCAGGTTGAAGTTGAAG
CTATCGCCTTGAGTCGTTTAGGATCGGTATACGCAAAAGTGTTGAAAAGG
AAAGACCGTGCTAcagaatgttttaaaaattccatTGAATTGGCCATGTC
TCTCACGCCACGTGTCATGAATGATACTCGTAagtttttttgtaaacaaa
cttgTACCCAGTCCCTCGTCGCTTTCATCTGTTCAAGTTCATCAGTAGAA
CCCAAAAGCAATATTAGTTGCTCTTAGTAAGGTAGCACTTGTTATATACC
AAGAGAAAATGTGATATAAATCGCACTGGACTAAGGTTCAAGTTCAATAT
GCTCCATGATTTTGAATCTAAGGAAGGATCCGCATGGACCCCTTCCCTTT
TTGCGgactaaaaagtcaaaaaccttAAAAACCTGTTTTGATCACCGTGA
AAATTCATCAGAGCGAAAAATTTTCGAATGATAGCGTAGTAGTAGTTCGA
ATAATctcttactcttgtctcccgaatagacgtccccccgctaattgtta
aaagcaaaaaaaatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNttgctacggcactgtaacagcagttaaaaaaattatgtcttCAAATCA
ACCCACCACCTCTTATTCAATCCACCCCActtattagaatttaaaaaatt
ttcctacccccctgcttattcggaccccgtctattcgggagacaagagta
agggTCCATTGTCACGTTGTTTCACCACAATGATGTTACATTTTGAATTA
CATTAGCATGGTATAAAGAAGCCAACGATACCTTGTTAAAGTACCAGCAA
AAATCAATCTTGGCACAAGACGCCAAAAGAGAAGCAGAGCGACAGAAACA
TCTTACAGTGAGTAATACATAGAAATATCTGAAGGATAAATTGAAAACTA
TAGAATGTCAATAAGGGCTACTGTGCCGATACGTATATCTGTTGCACTGA
CATCATTGTGATAGCAAACTACTAAACTTCACGAATTTACATTACTTGTG
GCCTCTCATACTACACGTGGTTACTGGATTGATCGAGTCTAAAACATGAC
ACTGTTCCCGGATCTGTATGTGTGGGGACTATATAGCTCAGTGGGTAGAG
AAGTTGCACTAGTAATGCGAAAGTCGTGAGTTCAATCCTCACTTCAGCCT
TCAGTTTAGTATTAGTAGTTCGCTATCTAACTGAGGTCAATGCGCAGATA
TTCATGCAAATCTTTGAATATCATAAAACGACTTCTTCgatttttctatt
gtaaacttgGTCAAGCCTTTGCAGGTGGTATCAGGAAAACATTCCAGGAA
AAAAGGTGTTTGATAGTTGTTAAACAGGCTTTATGACATGTTGTATTTCA
TTATTTCATTCAGGAGCTCTCAGAAGAATTATCAGATCTTTCAACAGCAG
CTGAGAACCAAGAAACCAAAGGATTGGTTTTACACATCTTTGATAAATAT
CCACCAAAATCAACGTCAGCTAGGCTTAAAATCCCAACAAAGGAGGACCT
GGATGGTTTAGAAGAACCTAATTTGCGAAAATTCATCCAGAAGATGTTAC
TATATTATCACCCTGACAAGGTTGATGAATCAGAGCATGGAAGCAAGTGG
AAAGTGTTATGTAATGAAATCACCAAAATATTAACATCAAAACTTGAAGT
TTTAGAGTGCAAATAGGGATAGAAATCGAGAGAATCGTCAATGAAACTTN
AGAAGCAGAGCGACAGAAACATCTTACAGTGAGTAATACATAGAAATATC
TGAAGGATAAATTGAAAACTATAGAATGTCAATAAGGGCTACTGTGCCGA
TACGTATATCTGTTGCACTGACATCATTGTGATAGCAAACTACTAAACTT
CACGAATTTACATTACTTGTGGCCTCTCATACTACACGTGGTTACTGGAT
TGATCGAGTCTAAAACATGACACTGTTCCCGGATCTGTATGTGTGGGGAC
TATATAGCTCAGTGGGTAGAGAAGTTGCACTAGTAATGCGAAAGTCGTGA
GTTCAATCCTCACTTCAGCCTTCAGTTTAGTATTAGTAGTTCGCTATCTA
ACTGAGGTCAATGCGCAGATATTCATGCAAATCTTTGAATATCATAAAAC
GACTTCTTCgatttttctattgtaaacttgGTCAAGCCTTTGCAGGTGGT
ATCAGGAAAACATTCCAGGAAAAAAGGTGTTTGATAGTTGTTAAACAGGC
TTTTAATATGACATGTTGTATTTCATTATTTCATTCAGGAGCTCTCAGAA
GAATTATCAGATCTTTCAACAGCAGCTGAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006727TCONS_00006727Clytia hemisphaericatranscript
TCONS_00006728TCONS_00006728Clytia hemisphaericatranscript
TCONS_00006729TCONS_00006729Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:170399..175578 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.2	0.2	0	0.09	0.32	0.28	0.32	0.26	2.03	1.83	0.06	0.06	0.86	0.48	3.15	1.32	0.69	0.32	0.32	0.52	0.89	1.37	0	0	0	0