XLOC_003862 (gene) - C. hemisphaerica

Overview
NameXLOC_003862
Unique NameXLOC_003862
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000072:532478..540559+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003862 ID=XLOC_003862|Name=XLOC_003862|organism=Clytia hemisphaerica|type=gene|length=8082bp|location=Sequence derived from alignment at sc0000072:532478..540559+ (Clytia hemisphaerica)
AAATATGACATCCTGActagcaaaaataaaaacaatgaaaagggGAGCaa
gaaaaggagaaaaaaaacttacaatTGTACGCCATGGTAGACTTCTTTGA
GAAGTGTCATACTGCTTCAAAATATTCTTGCGAAAGAAGTTAATTTCTTT
AGAGTCAAAACGATGCCCCATAAATACAAAAGTCTTGATTCAGGATGATC
TATCTGGTTTTGGTAGCGTAGTGTTGTGAACTGTCGAAAgattcaaagat
tttgcttacGTGCCTTTCCTGCCAGTCTGGAGGTTTTCGCGCCGTTTTCC
CATGTGATCATGTCTTTGGTTACCATCTTTAGcttctcttgctccacaaa
tttctGATAAATTCCATGCCCGCCCACCAATGTTTTTCCGCCCATAGAAA
CTTACCGCCTTTTTACCGCCTGCCAGTTATTTTGCAGAACGAAAGTGAAG
CAAAAGCGACTCGGCGACAACTTAAATTAAAGCAATACTGTGAAAGCTTA
GAAGATTCTTTTTAATGGTGGTGTCGTCTTGTTCCAGCCACTATGGTTAG
TAAATTGTTTCTTTTACGCTTCATTATCTACTGATATCTTTTGAATCTTA
ACTTTTCATGGTAAAATGATACTGAACTACTGAAGTTTGACCCTTACTGA
AATCCTTGGTTTGGACATTTTAGTTGGAATTAGTTACTGTGTTTGTGAAA
GTCGCTCTGATTGTATTGACTGGTTTTGAAATCGCTTTCAAAATTCCTGA
TCACAATGAATCCGTACTACTTGTCCAGTTAAATAAAACAGTCGGAAACG
GGTCGTATATACCTCATGGAAAGATCATCAAAATACACAATCCCAACTTC
AACGCAGTTTTATCGTACATGCAAGGATGATGACGATGTACTGACTTGTA
CCTACTTCATTCGAATGCATAACTGTGCATAAAtacatttcaaaactttt
agtGCGTGATGGAAGATGAAGGTTTTTGTATGAAGTTTGTAAAGGATTAT
GGTTAATATTACTTGATATTATGGATTAAAGCTTCCAGAATGCAACAATA
CTGGttacatttttcaaagtctAGTTACGGACGGACAGGGAATGTGCTAA
GCTTTTTAGTACAATTCAATTTGAGTGCCCTATTATTGATTATTTTTGCA
TTGACACGTATGCAGCCAGGCATGATTTTTCATTATGAAATCTCAAATTT
CAACATCTATCAACGAAAGCGATTTGTATGCTACAGTTTCTCCATAGTAG
GATAGAGATATTGAATGCGTTGGTGGATTTACTTGGACAATCTGTTTTAA
TGACATTGATAAGCTGTGACTCAGTTCAACAGAGCTTTTCCTAAAGAACA
CTTTGAAGAGTGACAACTCTGGGGGATAATGCCCTTCTTAATCATCAAAC
CAGGAAGTCAAGACTATAAAGCAAAAGAACTAAGTAATCAAGAAATACTT
TAACATATTACTTTGGACAAATCTTTGATAGCATTTTTATTAATCaatct
ttgttttctatttcattTCAGACTAAGGGAACATCCTCGTTTGGAAAAAG
ACACAACAAAACACACACTTTGTGTGTAAGGTGTGGACGTTCTGCATATC
ACATCCAAAAGAAAGTATGTGGTGCTTGTGGGTTCCCATCGGCTAGAAAG
AGAACATGTGAGTCCTTTTCCTACTTTGATCGTTTTTAATCTTTCATCTA
TAAGTACAAGAAATAAAccattaaaaatatatatacattTTGTTGTGAGA
ATGAAAACGCCTGCATGTTTTTGGGTTGCTCTCTGACCANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTGACCAATGATTACCACA
TACCTACATTGtatgataaatatgattttccTTTTAATGAAATGAGGTCA
AGAGACAGCAAAAAgtttctcttttgaaaataaaaacagtttGCTACGAA
ATATTAAAAACTTGTTGTAATTTCctcatctttgttttttatctcaGTGA
GGTGTTGTCTAGCTGAAAGGCGAGGGGAATTTGATGCTCTGCTTACCGTT
gcgttgcaaaaaatatttgatgtggcaaaatttcattattcattattcct
acCTGGTGCTTCCCATCTCCAACAAAGTTAAATTCCACTGTGAAATCGAG
CTGCTTTCACTTTCAGAATCAAAATGACATGCGCGAATATTCAAACGCGT
TCCGCGAATTTCTTAAACGCCCTTGTAGCCGCCCACTGCTTTAAAAAATG
CCTGCCCCATTCGCGGACGTGATTGGAACCATGTTTTTTACTCGAGGCAC
ACATTTTGTTAGCGaagatgttattttttattcactttgagtgttttgga
tagcttggcacaggaaaagaagaaaataacgagtttttgagaaataatga
acttttttgagcggcgGCTCAAGAGCATGTGGGCGGTCGATGGTAAACAG
AACATTAAATTCCCCTCGCCAAAGTCTGAATTATACACGCTTAGTTTAAG
TATCTAGATCTtgagataattcatttttagtgggtaaatatgctgaaGTA
CTGCTGACTTAGCAAAAAGTATCAATAACTTtaaatatttaaaccaaaat
atcttgaGATCTAGACATTGAAAGTTTACAACTCGTACTATTTTTGGATA
CTAATTCAGGTCTATCCAGCTGTTAGAAtgattctttcttgcagttactc
cttgacactatgtggagtaactgcaattttggacattttctacagacacc
accacccttgcagttattccatagtgtactaactgattttaccctcaaaa
ttggtgtataccacccccactgaattcctcatttttgataccattttatt
GGGTACGTCtcattaacgaccgttcaagagttaaatatctcaatcatttt
ccaagtttttttattaaaatatctttcatgaccttgattgaagaaaaaaa
tttatgatttttttttgacttttgaaaaaaatgttttgaatttttttgct
tccggaatttttaaaaacctaaaattttaagtgaaaaattgaaaaatgtg
ctcacttagtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNcttagtacaccatatcctaccaaaatcgacaattttgggcttaggcac
cacccatgttgcagttagtccactggtggagtaactgttttcccaaattt
aggtttatataccaccacgatagtaattgtcatagtgtttatataataac
tgcctgccccccccccccccccctgttccATGGCACCAACTGATTGCAAT
ATCTACCTTTCACGCTGAATCTATTGGTTGCaccagatatttgattttca
gaaaaaactgTTTATAAAGGGAAGACTCTTGATAAGTTCTATTGATTAAC
TGAAAATCGATCCACTTGAAAACAGCTGGAGATTcaaaggacatgttttt
tttgttaatcCTAAATTAGGagcataaaaataataatatgagAAATTTGC
CCTCATCCAAGGGGTGCCCTACAataacctgttttaaggccttttctgaa
cCTCTGAAACATGAATACTGTactcaacttttttggaaaacccatcctga
aatatttatttactttatAAACAACTCCTTTTTTCaggtcagggctgggg
ttgctGGGTATGCAAATCAGGGCTATGCTcaaattatctaaaaagctttt
acttaaccaattagtgaaaaatttcagcttgagcACAACCCTGGACATCG
ACGTACATTGTACGGTGGGGTGTATGGCAGATTTCAAGTTAACCTATTTT
AACCACCGTTCAGAGCTTTGTGGTCccaccatagtcattataaaaaacac
tggtctggaaggctttctTTTTgcacctacctccgggtacattaacccat
gttcgtccgtccgttcgtttgtctgttaccagcttttcttgagattggct
cattacttttttctgttttttggcacaatgatgcaaaatgatgattccta
aaaagtgacggagccagattttgagaaaaaaattttctggccaaaaattc
cagaaatgtgccggaaaaataggttttttgacactttctcgagatttttt
gctcaaagatgtgtattaacaatgcccaataCAGGCATGATAATGGCaga
gtccaatttttgagaaaaaatttttccggctgaaatcaccgtttttctgg
attttcattggacttctTCCttataatttgttgttttttcattcaaaaac
attatttatagcaatgcccaccatcaagcatgtttcaattttcaataaaa
ttgatttttgaagccagaactgtttaaaaatcgccggaacaacctatttt
cgccagaaagacagtatttcttgaatttctccagctgtactttatattta
tgtatgaaattttgcacactgatgcaatatgacaatatagtcaggtagaa
ttgcataactacccagacaaaaatggtgtagagatgaaattttgcacaga
ggtccaggaacatgtaaagaatcaccaaaaaaaagccCCACCCCCATGAT
GGATTTATTGCATATgcatatattttctgactgattattttcatttttgg
acctaccctggtggagtggaggtcctataaattcacctctgtccgttcgt
ccgtctgtccgttcgttagcagcttttctcgagattgaatcataggaatc
atttgatttttggtacaaaggtgcaaaacggtggtggccaaaatgtgacg
gagcccaattttcgaaaaaaaaaattttacagctaaaaacgggtttattg
gactttgtgaaaaattgtatcattaattttttcttatttttgcatgaaag
tagggtaccatcataggtaaaaaatggctcaaacagatttttgcaaaaaa
aattatttggctaaaaaaacgcatgttaatctataagaatcactattaat
aagcatacatcaatgttctgagtcaaattactcaatttctttatgagata
gatattttttttgctcatgtgggcttacttttgaagaatatgtgtgttta
gacatgaaattttggttgcttggtgtgtttttatagaaaaactggccaag
ttcgatatttttttataagcacattatcaatagATGATATCGGCTTAACC
GAATTCTCCcggaatgattacccatgatgcattgcgcaaaaaaattcacg
gacgataaccttaaccctaacaatgcatcatgggtaatcattcagagaat
tcggaaagccgatatcgtctttacttaggtattagcttttctcgagattg
gcactttcattctttatgattttttgcacaaagatgcataactataaacc
ctcgaatgtgactgagcccgattttcgaaaaaaatgtatttgagccaatt
tgggccaaaaaaacggctaaaaaaagggtttttggacattgtgaaatatg
ggatcgttgtttttttctgattttttgcatgaaagtaggtaaaagatggg
tcaagcagatttttgtaaaaaaacttttcactattaataagcatacatca
atgttcttagccaaattactcaattttttgatgagatggatgtcttttta
tgctcacgaagtttTGAacatgaaagaatatttcaagagcatgaaatttN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtgttctgaatgattgtt
taacgttcatgctcacgtagatatcaattatatatgtgttaaatgcataa
ccaggtaggtccataaaagtatcacttgttcttctcgcattgctatctaa
ctttcatcatcaggtagctccattcagcatgttgttaaaagatggagctt
acgtaccaaaatcgatttattttgcaaaattcGTGAATTCGCTTATTTGC
GAAAGTTTAAAGACAAagtacggtggtgctttccAGGAAGCTTAAATACC
ACCGTACACACCATTGaactttgcattttttgctCATGGTCGGACTTATC
AAAAATCTTCTCACTaggaaaaactttctttgaaaCATCGAGTTTGACCA
CGAAACTTgtctttcgcgaggtcgaattTCCACAGTACAAGTTGTACCGT
GGTAATTTGATGTCCGGTTGGGAAAATGTACGGTGTTTTCAAACCTTTAG
ATCCAGCACCACCGGCAgtgtacggcggtgtccagggttGTGCTTGAGCA
CTTGGTGGGTAATAGAAAATGTGtgacaaatatgaaaaattctaattttc
ttaaaatttctgtGTCCTGATTTGCGAGTAGTATAATATTGTTTTAAATC
AAGGACcttAAATATGGCACAAGTGGATGCTGAGAAAATGCTTAAAGGTA
GTGTGCGTACACTTTCAGAAGAAAcagaagattttatttttgagttcATA
TTGAATAGAGAAGAAAGGGTTtccttataaaatatttttctttcgtttca
gACAACTGGGCTGACAAAGCTAAAAGGCGAAAGACCACTGGTACTGGCCG
TATGCGACACTTGAAGAACATCTATCGCCGATTCCGCAATGGATTCCAAG
AAGGACAAGCCAAATCCAAGAGGAAGACTGCTGCTCAATAAATcgttcat
aaaaaaataagaaaatcagaCACCACAAAAAATGTTTATTCTATTATAAA
TCTGTTTACTAGGTTATTCCATGGTTATTCAGCACAGTACCCGGTTATTC
gaagcattgagtttcaagccgaaggctagaggtcaatctctttggtagga
tttgaagccaacaaatcctaccaaagttgcgcggccttgagcgacccgcc
tggtttttacacaaatgacagattgaaactaaaatttaccgcttaatttc
gaaaaatatatcactcgaagacAAAGGAATTGcaagattcaatccgtcat
caaaaatacggcgcctattttaaggcttcaatttttcttgcctgagaaag
gttagagattgacctctagcccttcgggcttgaaactcaatgattcGAAG
TGAGAAGGCGTTCACCTTTGATCTTCTCACCCAAGCAAAAACACTTGGTT
ATTCGAAGCTATTTCTATTCCGCTTGGGCCAATTATAGATTACATCACTC
AGTTATTAGAATCTTTTTCGTTGGGAGATTAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006893TCONS_00006893Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:532478..540559 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
380.42	379.35	423.17	481.85	381.02	311.12	411.61	432.04	594.54	513.48	646.03	789.94	908.54	993.83	835.47	797.55	884.97	887.51	490.93	551.98	795.46	759.57	640.54	602.09	709.42	735.9	766.37	777.24	501.66	525.06