XLOC_003889 (gene) - C. hemisphaerica

Overview
NameXLOC_003889
Unique NameXLOC_003889
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000072:613794..623890-

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003889 ID=XLOC_003889|Name=XLOC_003889|organism=Clytia hemisphaerica|type=gene|length=10097bp|location=Sequence derived from alignment at sc0000072:613794..623890- (Clytia hemisphaerica)
GCCCCGTTTTGCTGTTTTTTACTCCAACGTGCAACCTTCTAAGACCTATA
TAGCTTTCTATACAATAATCGCATTTGAAAAATAATTTATTCATCCTTAG
ATCATTTCATAAAACAAATAAACAAAAAAAAAAGAACAAGAAATACTAAA
TTGTCATCACTGACACAATGGGAAGCCAGAAAATTGGTTTGCTAGCAATG
TTTGCTATACTGCTAGTTTTGCTCACAGAAACTTTCGCTTATGAATGTGA
TACTGTAACCCGTTCGGGTACCTCTGGCTCTTTGTCTGGCGGAAACAAAT
ATGGGTGCAGTACAAAAACTTATGATATCAACCTTGGTACTACAATGGCT
GTGAAATTGACTTGGTTGACTTTTTATAATATCCCTGGAGATATGCCTTA
CTGTACTGATGGATATGTTAAAGTTTATGCGGAGTAAGTTTTTTGTTTTT
TCCCAGCTGGCCCACAACGTTGTTTCAACGTTTATCTAACGTTCATGACG
TCCATATAACGTTAAATGAACGTTGAAACAACGTTGTGTGCCTGCTGGGT
CTTTTATACGAAATATCACCATTTAACGGCCACTACATTCATATAAAGTT
TACAAACCTCTAAACCTAGCCTGTACCACCCCGCCCTCGGACGTTTTTTA
TATTTTGAAAAAAATGTCGCAGACACGGAATGTTGCTTAACTGTAACAAA
CCGAACTTTGTGTTATCTTTTCAGTCAGTGAAGAAGAGTTTGGTACTGGC
TACTACATCCCCTCCCCCAGAATTCGAGGGGATGTGCCCACTAAGCAGAT
GTATACTACTTTTTTTGTTAACTCCCTAGCGATATTATATAATTGGTCTT
CGCGGGAGGTTTTTGTTGTTAACAGTAGCGTAGACAAGGAGCGCAAAGTT
TGTTTAGAAGAGCATTACTGCTCTCTCACACAGCTTTGGCACCCTCTTGT
CTCCTGTTCTGAGTGGGACGAGGTGGAGTTTTTACAAGTTCTTATTTGAT
TTGGTTGGTTGTTAACCAGTAATAAAACAATTTTGTTACTTTTTCTAAAG
AGCGCGTCATTTCTATTACTTCAAATGACCAATTATTAAAGTATCTTATA
AAACTTCATCCCATCTGTACTTAGAATTGTTTGTTTGTGGCACCTACAGA
GTTAGTTCACATAATGTTTCCAGCTCACCCAAATAGAGACTCTTACGCAT
GCGTAATTTATCGTTCTTTTCAACCAGATGTAGTTAATTCTCGTGATAAA
CAAAGAGGAATGAATCTGTAGGGGTTGTATAGTCTCCTATAATCTCTTTG
AGTCGGGTTTGTGGATGGCGAAATATGTCGTTCTTTGATGGTTAGGGTTA
GGGTTAGGGTTAGGGTTTGCCGTTGCCGTTCTTTTTGTCGATTTTTTAAT
AATTATTTGTTGCTCTTTTTAGATGGTTTGGAAACGTTAGATGAATACAG
TCTCTATAAAAAACTACTTTGTCATTTTGTCTTTTTAGTTGTGGTACGTG
GCAAATGTCCAGAACAGAGATCGCAGAGTTTTGTTCCGGAAATATGATCT
CATCCCTCCCTCACGACATTTATGCGTATACAAATTGTTTGAGATTGGTG
GTCAAAAATCCAAATACTTATTCTTCAAAAGGCACTTTTTCTGTTACTTG
GGGTCGATATTCGTATGGATTGCCATCCTGCTCGTATTCATCGGTGTAAG
TANTTCAGAAATCATATAAAATTAAAACACCAAAAGATGGAATACATTCT
AAAACCCCATCAAAATTTATGAAACTATAATAAAAACATGAAAATTCCTC
CTAAGTTAGAAATATTTTGCTGCCAACTCGAGCAAAGCCAAAAAATGGAG
TCTGCTAAATTACACCGGTTCATATATCAGCGCCATCCAGTCTATCAAAA
TGCTGTATAAGTGGCTCCCGTGCTAGGATATACCTGATTGGGTTTGATAT
AATGGGGTTAACTGCAGTTGGGGCGTCCCGAAGGTAGGTACTATGCACCC
TGGATTACTCCACTTGCCTTTGACCATTCTATTTCATTTATGCCGTGGAG
GCATCAAGTACATTGGTATGATCGGGCTAGGAATTGAACCCACGAATTTG
TGCACTCTACNGCGTTTGTGTAAAAACTACGCGCGGGTGTTCTGGGTGGT
TTAATTTCTCATCCAGGAGTCTCTAGACCTTCGGGTTTGAATTGCCAAGT
TATTAAGAACAACATACCTAGCTTTAAACCTGGAACCTGTACAATGTGTC
TGGAAAAAAATATTACATCAGAACAACAAACAGAAACAAAAGTAGAAATC
TTTGGTTTTCCTTCTTTTTTATCATAATACAAAGCACCCAACGACATGTT
TTGATCTTCTTCTTTTCTTAAGACACTCAGTGTAAAAAAAAAACCTTTTA
TACCTTATTNTGAAATTACATCACGGATCCAATAGCTGATTGGTTGTAAG
TGACGTACAATTAGTCATTACGTCACTTTGAACCAATCAGCTTTTAAATG
CGTGGAAGACATTGCAATGATGCATATCATGAATAGTCAGCATAAAATCG
ACTACAAAAAGTCAATGCGATTCTTTGTTTTGATACTAATGTAGTGACAT
CTTTTCAACTTTTTCCTGCGTGTTCGAATTACGGGGACTCCACTGTACTA
TCAATAAAATTTTGATATGGAAAATTAAAATGTTATATTCTGTGAAGGTA
GAACACCCGCCCCATGGTGCGTGAGGTGGTCCAGCCCGAGTCAAACCAAA
GCTCCTCTAATCGTACTTGATGCTTTTGCTTGGTGCTCAGTTACTTGAGT
AAACTTTCCATGGAAAGTAATGGCTTCTCCCTCTAACTTTGGAAAGACTT
CTTGCTGTTTAGTAATCATTCTTCATCGAAGAGGTCTGCCTACGGGAATT
TTTTTATAAAACAGACAATGTGCACATGGTGTACAGTACAACGATAAACC
TCGACTGCGGTCACACGTCTTTACNAACGACATGTTTTGATCTTCTTCTT
TTCTTAAGACACTCAGTGTAAAAAAAAACCTTTTATACCTTATCGGGGAA
AATGTCGTCAGGGAAAAGTGACGAAATTTTGGCCAAATGACGAAAATTTT
CCCCGGCCTTAATGCGTTTACCAACTGCCAGCAAATGACGAATATTTTTC
CCCGACGAAAATTTTCCCCGGCGAAGTTTTCCCCGATAAGGTATTTTGTT
GTTGATTTTATAGAACAAAAACCTCATCAAGTGGAGTCATGGCAACACCA
AGCTGGCCCAATCCATCATATAGATCATCCTGCTCGTGGAAACTTGATCG
TTCAAAATCTAACGGATATCTTATTCACGTTATGGACATTAAAGACCAAA
CTTATTCATCTTATTGTTCCTCTAGCGAACAACAAATAACGATCAAAGGT
AAGTTTCCAATACAAAACTTTGTTAAGTGTGTTTGTGACATCGAGGCAAA
TTAAAGATCAAACTTGTTCTTCTTATTGTTCCTCTAATGAGCAACAAATA
ACGATCAAAGGTAAGTTTATCATACAAAACTCTGTTAAGTGTGTTTGGGA
CATCGAGGCAAATTAAAGATCAAACTTGTTTTTCTTATTGTTCCTCCAGC
GAGCAACAAATAACGATCAAAGGTAAGTTTATCATACAAAACTCTGTTAA
GTGTGTTTCAATCTTAAATTTTTTCAGAAATCATATAAAATTAAAACACC
AAAAGATGGAATACATTCTAAAACCCCATCAAAATTTATGAAACTATAAT
AAAAACATGAAAATACCTCCTAAGTTAGAAAAATTTTGCTGCCAACTCGA
GCAAAGCCAAAAAATGGAGTCTGCTAAATTACACCGGTTCATATATCAGC
GCCATCCAGTCTATCAAAATGCTGTATAAGTGGCTCCCGTGCTAGGATAT
ACCTGATTGGGTTTGATATAATGGGGTTAACTGCAGTTGGGGCGTCCCGA
AGGTAGGTACTATGCACCCTGGATTACTCCACTTGCCTTTGACCATTCTA
TTTCATTTATGCCGTGGAGGCATCAAGTACATTGGTATGATCGGGCTAGG
AATTGAACCCACGAATTTGTGCACTCTACCTTTACACTTAGCTTCGCTTG
ACCAATAACAATTCATGATATGCACCATTGCAATGTCTTCTGAAATTACA
TCACGGATCCAATAGCTGATTGGTTGTAAGTGACGTACAATTAGTCATTA
CGTCACTTTGAACCAATCAGCTTTTAAATGCGTGGAAGACATTGCAATGA
TGCATATCATGAATAGTCAGCATAAAATCGACTACAAAAAGTCAATGCGA
TTCTTTGTTTTGATACTAATGTAGTGACTTCTTTTCAACTTTTTCCTGCG
TGTTTGAATTATGAACACTCCACTGTACTATCAATAAAATTTTGATATGG
AAAATTAAAATGTTATATTCTGTGAAGGTAGAACACCCGCCCCATGGTGC
GTAAGGTGGTCCAGCCCGAGTCAAACCAAAGCTCCTCTAATCGTACTTGA
TGCTTTTGCTTGGTGCTCAGTTACTTAAGTAAACTTTCCAGGGAAAGTAA
TGGCTTCTCCCTCTAACTTTGGAAAGACTTCTTGCTATTTAGTAATCATT
CTTCATCGAAGAGGTCTCCCTACGGGAATTTTTTTATAAAACAGACAATG
TGCACATGGTGTACAGTACAACGAAACGATGAACCTCGACTGCGGTCACA
CCTTTGATAACTTAACATTCATCTTCTGGTCAGGCCTTAGAACATCTCCT
AATCACTCATTTTTGCTTTCACCGCGTTTACTCTGCCAAGCCAAACGCGG
TGACTCAAATCTCCTTTATAAGATATTTTACTTTTTTTCAGACGAGGGAG
ACTTTGAATACAGTGGAAAAGACATTTGTACTCGTGATAACCCTATCCAA
TATTACCAGCCTACCGTCAAGATCAGTTACAGCCAAGGGACTGATTGGAA
TAAGCGAGGCGTTGTTGTCGGATGGGTCGCTTTCAAAGACCCTTATTACA
GTAAGTTAAACTATACGTTTGTTGTTTTACAAGAATAAACTATATAAGAA
CATAAGGCTTCTATGGCCAAAATGTTAAGAATACGCTAAGAGCATTTTAA
GGCTTCGCGGACTCTAAAACACCCGATTTCTTAAAAATTGGGCAAAATTA
CTCAAAAAATGGCCAGAATAAGAACATGTTAAGAATATTCATATCCTTAA
AACTCAAAAAGTTAAGAACATCCGAAGGCTTCAAAAAATTTGGATGTTCT
TATAAAAAAACGTGTATATTTCGATTCGGAGAAAATTTGGGTATGTTTCT
TTATGTGATAAATTGTTATTGATTTTCGTAGAGAATATCTGCTGGGAGGG
GCCTGGGGTTGTCTGGTAGGTTGGAGAGTAAGTAAGACTGCGACCGCAAT
CGGAGGCGACTCGAAGACTCCTCTTTTGATAGCTATCTACCCGAAGGTAA
GGCAGGGCCAGGGGGGAGGGGTACGCTTTCTCCCTGGATTACTCCACTTA
CCCTTGATCTTCGCTTAATTGCTGAGCATTAAACAGAGAGGCATCAAATA
CCATGAAGGGGATATGACCCGGCTGGGGGTCGAACCCACAACCTTGTGCA
CCGTAGCCGGATGCTCTACCACTGCACTACGGTCGCTTGGAAAGTGGTTG
ACGGCGGCAGAACCGCAAACCAGAGGTTTCTGGTTCGAATTTCTGTTGCG
CCGTGTGACCTTGGATAATTTGAATCTGTTTATAATGCGAACTAAAGCAT
TGGTCCTCTGAGATTTAAAACCGTCATAGGCTGCGTTTAGACCAACTGGC
ATTTGTAATTTGGCATTTGCTCATGAGGGATTCGATTTTAATAGCTTTTC
CATTGTATTTTCTGTCATGGCATTTAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGAAAT
GCCAGAAAAGGGGATTCCTTTGCTCAAAATGGCATTTCAAATGCCAACGT
AATGCCAACACGCTGGCATCATTAGGCATTTGATAAACCGAACAATTGCG
CGGAATAATAGAATTCAAAAGAATACTGCAAGCAATTACAAATGCCAGGC
TGGTCTAAACGCAGCTATAATACTCATAATTTGAATCTTTCTCTAATTCA
AAGGAAATCAGATCCAATAGACCTTTTCATAAATTACGTCAGAAACATCA
CTTGCCTCGTATCCAAACAATTACCATGGTCATTATGTCTCTTGAGACAT
TTAATGATTTTTTTTATGAAGAGGAAGTAGTTTTGATAAAATCCGCTGGG
AGTTAATCACTATGGCAATAATTTCAAAACGAGGTAAGTGATGTTCGTAA
CGGAATTTATGTAGGTCTATTAGAGAAATCATTTATAAAATTTCAAAATT
TTCAGCTGATGTTGGAGCAATTGGAGGATACATTGCTGCAGGGATTTTGG
TTCCCATATTCATACTTTGTATCATCGTGTGCGCATGCTTGAAACAAAAA
CGAGGCTACGTGTTCAGCCAAAGAGCTGCCGGATTTAACAACATGCCGCA
AGGCAATAACGTGACTGTCGTCAATAACCAAACTTCAACGGGTAAAATTT
TATTATCTAGCACCTCACCAAAAAACTGGGATTTTTTATTTGGTTTCTTG
GTGATTTCTATTTTGATGATTTTTCGAAAAATAGATGTTTTTTCAAGTGT
TCTAACTATGGCGTTCTAAATCTTTTTCAAAATGACTTCAAGATTTAAAA
CGCCATGGTTCTTACCCTGAGTATCAGAGGTTAAGTTTTCAAAGAATATA
TTAACCTCTGAAGACCAATAATAGAAATTTTATCGCGCATGTGTCAATCT
AATCACTGTAGAACGAATCAAAGATGGAGAGCAAATATTACCTTATTAAT
GTCTAGCAGACTGTATCAGTATGCAGTTTACTATTTAAGAATTCCCCAGA
AACCTCCAAGTGTAATTGAAGTGAGTTTCTTTCGAAAGAAATTTTTTACA
TGATCCCCAAATGTATAACAGTTATTACTAAACTACTAATTATGGAAATG
TCACTTTTAATTGAATCGAAATAATAGACAGGCTTTATGTTATGATTCTC
TATCACTGACTCTTTTTAAAAAGCATTGATGATATTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGATATCAACTTT
GAACTTCATCCAAGATCTTGGATGGTCGTCATGGTTACTTTTGTCTTCGT
TGATTGCGCGATGAATAGAATCTCGATTCGTCGTCACAGCGTCAATATAT
GATTTTGACCTGTGCTTTTCACGGTACATGGTTCTGACTCTAATTCGATT
TTTTCACTACTGCAGGAGCTTCAAAAGTTAGAAATGACGTTAAAAATCGA
ATGTTTGGAGCCCAAAAATCTGAGCTCAAAACATTCGAAAAAGTCGCAAA
GTGGAATAGACGATACTGCGTAGAAAAAGCCGTAACATCTAGTATAGGCT
AACTTATTTTTTGCATTTTCTGGAAAATCTTTTAATCCCCCGTGTTGGGG
AAGACATTTTCTGCCCAGTAAGTTGAGGGGTTAGCTCAAAAGCACGACCA
TCCAGGTGTGTTAGTGAAAGTCCAGGGGGCTTTTTAGAATTTAGCGGTGA
AAATACAAGAAAAGGTCACTTTTTGTTGCTTTCTAAAACCCTTTTATCTC
TCTGTGTTTTCAGTAATTCCTTTGTCCATCAGGTTACCGCAAACTTACCA
TAAATTTTCTTCTTCAAACTCAAAATACAAAAAAAGTCAAAATGCATTTC
CAGGAATGCCAGCATTTCTCTGGACAAATACAATATTTTTCTAAATGTTC
AGAGCTCCAGATCGAGCCAATGAATCAAAATTTCGGAATTACAAAATTTA
ACATTAATCTGGAAAACACAGTGTTTTAAGAAATTCAACTAAACGGAATT
AACTGAACCCTAAGACATTTCCATGAAACAATGTAAAACTTCTGATTTTT
CGACATGATCTAGGCTCTTAGAATTTCTAAGCAAGTCTCAAGATTTGATC
ATTTAGATCTTGTTAGTAATAAAAATTACTTCGCGCGGCTAAAACAGGCT
GAAGTAGCTTAATGTTAACACTTCTTTTTGTCAGTTAGCTTCCTTTTCTT
TTGTGACAAAGTTCAGGATCATTAACGAGCAAAATGACAAACTTTAAAGA
TCGGAACTAAANAGTTAGCTCCCTTTTCTTTTGTGACAAAGTTCAGGATC
ATTAACCAGCAAAATGACAAACTGTTTTCTCACTATTTCAGCTCAACAAC
AATATGTTCCACCGCCCCAACAAGGATATCCAGCACAACAACCAGCTTAC
CCACCACCCCAACAGGGCGCTTACCCGCCGCCCCAACAAGGTGCTTATCC
AAACCAAGGTTACGCCCCACAAACACAACCTGGAGCTTATCCTCAACCAG
GGGCATATCCGCCGCCCCAGCAAGGATATCCGCCCGTCTCTCAACACGGA
TACGCTCCACCGCCCGTTTATCAAGAATCTGCAACGCCCCAACCACAACC
ACCAGTCCAATAAAGTCATTGCTTAAAACCTCAATGAAAGAAACGCACTA
TTTGGCGATAATTAAGCTTTGTATTCCTGTTGTTGTAAAAAGACACATTT
TACCTGTAAAACTTTTTTCACATGCACGTAAAATTTTACTTTAGACCTTA
CGGAAAATCGTTCGTAAGGCTGTCTTTTGGGAATTTCCTCGTAACTATGT
AGAGTTTTTGTTCTACCACTGCACTACGGTCGCTTGGAAAGTGGTTGACG
GCGGCAGTACCGCAAACCAGAGGTTTCTGGTTCGAATTTCCGTTGCGCCG
TGTGACCTTGGATAATTCGAATCTGTTTATAATTCGAACTAAATCCTTGG
TCCTCTGAGATTTAAAATCGTCATAATACTCATAATTTGAATCTTTCCCT
AATTCAAAGGAAATTCCCTTAAGTGAAACTTTACGTACATGTGAAAAAAG
CTAAAACATCACTAACCCGATTGACTATAGAATTTCAAAACGATTTCTTT
CTGTTCTCTTCTGTTGTTTATAATGGGCACAATACTATGAAGTTTGTGTT
GGGTGCTCCTATAGTTCTTTTATAGATTTAGGATTGTAATTTTAATGATA
TCATTTATTTTAGGATTTATAATATTTTTTGATGATTTTTAGATCTGCAC
TTCATATGCATATACATTTTAAATTCGATATATATTGCTTTTATTTTTGA
TAATTTTTTTAAAATGGATATTAAATATTTGATCTAGAATATGTCCATAT
ACACGCTTTTTTTATAAGAACAATTTTATAAGAACACGAGGCTGAAAATT
GACCAAAACCTAAGAACAAATTAAGAATAATGCGAGCGTCAGATTTCGAA
GATACTAAGAAAGTACTGATTCTAAACCTATTTTTAAGAACATCATACAG
AACATTTAGGCCTTGAAATTTCAAAAAATTCAGAACAGCTCAGCTCGAGC
CAAAATTTACTGTTTCTTATAAAAAAAACTTGTATCCATGTTTGTCTACG
TTTGTCTGTTTGTTGTGTCTAAATAAAAAAATGTTTAAATAATGCTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006966TCONS_00006966Clytia hemisphaericatranscript
TCONS_00006965TCONS_00006965Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:613794..623890 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.29	4.63	3.48	4.67	6.57	4.35	8.54	9.05	12.69	17.92	31.7	11.94	125.99	104.43	82.99	99.62	62.88	62.26	112.11	126.71	63.04	71.01	48.82	52.85	39.89	44.02	39.31	36.35	113.82	97.39