XLOC_004436 (gene) - C. hemisphaerica

Overview
NameXLOC_004436
Unique NameXLOC_004436
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000080:157736..166296+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004436 ID=XLOC_004436|Name=XLOC_004436|organism=Clytia hemisphaerica|type=gene|length=8561bp|location=Sequence derived from alignment at sc0000080:157736..166296+ (Clytia hemisphaerica)
ATTCGAATTCTTGAGATGATTCGAAAttcgaaaatgaaaaagtaGCACAT
GGGAAATTGCGCGCGAAACTAAAAAGACACGTGTTTTTTTGTGGGTGCAT
TTTCCAATAAAAAACGACTTCAGTTTGAAGGAGAAGGTATATAATCATCA
ATGCACGAAGATGCAAAGTGGGAAATGGgggaaaatgtcacaaaaaagAT
CTTTGTCCGCGCGATCTCAAATAACACTGTCGTCAGGGAGTACTcatttg
tttacaaaattcttTGACATGACGAATTGGTCAGTAAAGTTAACGAGGAA
TCTCCTTCCAGCTACGCTGTTTATTGTTTTGGTTTGACCAATCAGAGGTG
GACTGGGCAAAGGGTGAGCCGTGAGCAATGCGCATGTCTATTATGCTAAA
GCGAAATGGTAAAGATACGAAGATAAACTGTTGATGGAATGTGACTAGAA
GAAATAATGTATTTATAACCATAATTTTGACTAAAACTTGTCAATGTTTC
ATGCCAATATACTGATGGATTATACGTTTATTAATATTGGGTTGTAATTT
TGGATGATTCGCTGCAATAGCTAGGTTTAACGACTTGCAGCGATTCCATA
GAAGAAGCCAGTATTTTTATACACATAAACAACAAGTGGAGGCTCTCCTG
GTCATTGGTCATAACAGTTCAGTTTGTTTTGAACATATAGTTgagttgaa
ttttcaaattttggtattTATCTAGAACTCTTATACGACAATGTCAACAG
ACACAGCAGATCGCTTTACCTCTAAATTTCGACAACAACGCCAGACAGGT
GCTGGTGGTGGAACACGAGATAGGAGACGCGTCTTTGAAAGTGGAAACGA
TGATACAACTAAGAACAGTGTAAGCTCATCTGGTGTAGCTGGTAGATATA
GAAGTACTGGTGATAGGGGTGAAAAGACTGAAACCTCATCGGTATCCTCA
CGACTTAGTAAACTAAATACAAATGATGATAAAGAGGATGATACTGAGAA
AAGTTCAACAGAAAATAAACATCAAGATGAAGAAGATGCGGAAGAACAAG
CATCTTCTCGCAAGTCACATCGAAAGGCTGGAGGTGCAAGCGCTAAATCG
GGACAAAAACGACGAGATAGaaaaaatttaagggaaaaacGACGATCAAC
TGGTGTTGTTATAATGCCTGGGCAACCGGtataaattgttttgttttgtt
tttctccagACACTCTAAACAGGTTTTCCAAACTTTGTAGGAAAGAAGCT
TACAGGCTCATTTCAGATTATTCAGTTAGGAATGGACAATTTGTTGCAAA
GGTTTTCCTCATATAACAACATTATGATGGATAATAAAGTCAAGTAGAAT
AGAAGGTTATTCAGATTATTGCAGGTTGGCCTTATTCTTAGGTTTTTGTA
AATCAAACATGATCAGTCAAACAATCGTTAGAAATATTTGGTTATTTACC
AAACCAATTTGAGAATTTTAGCAGGCTGAAAAATTCAACTTATGTTTCAT
TGTCTGATATTAGATCTTTTGCTAAACATTGCTAAAGTTGGTTTAATGTC
AGCAACCCCCATTCCATTCTGTCAACCATTTTTGGggaggaataatagga
aggtaaGAATATCACTGATTGAATCtatatttctttggttttaGCAAAAG
GATGACTGTATTTGTAAGGGGGTTGTCAACATAAGACCAGCTTATAGTTC
CATCAGAGCATATAGTAATATTATAGTTTGGAAGGTGAGAAAGTTTTATG
CCTAATATGACAGTTGatagtaccgtcaactgctctaacttgggactatc
tgacaaaacatgggacggcaattcggccaccgaacctccaaagtcatttg
atttgagttaatgaacagcgtattaaaaaatacacgatttctctttctca
ccaagtaggcttttaaatcgaaatatNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNtagcataacttttgatctaggcatccaa
ttgacttcaaattttgacaggttttaggtattaaagataaattttaaaaa
atattttaaaaatgttcaaaaactgctgatgtcatcataaatgacgtcat
tattttttgaaaaaagttactcattttctgcatggattttaaacctcgat
tttattagtatattgaaaaccggcaaatatgttaaagatattcattttgg
ctttttgaaattcaaaacagaattgaaaaatctctatttgttcaacttta
attgctattttattgaatagtactttttcattggtcagcgataattgtga
aactttgtgatgacgtcatcacctttatgatgacgtcaNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttaaatttttttct
atgaactccttttatggtagagaacatttgtgccaaatttcaagtccata
ccttttctagatcaaaagttatgcaaggctggtggaaaacacccccccca
cccccccttgagaatacaaaatccgaaaaagcctgataataatagggtta
agggaAAAAATtgtcgcagaatttaattttgcggttcacacaggttcaca
gctcaaaattctgAAGTTTTGCAGATTGAGagcattttttgtttaaaata
tggcctattttgccctaaaaagataAATCTTTtaggtgattttttaaatc
atgaaaatatattaaattccaaaaatattaaattGTTCCTGCAaaagttt
cttcctttaaggtaattgATTACCTGTCTATTACCACAGCTGTTACCTag
ggacaagataatttatcctgTTTTTACTGACTGGTGAAAAGAAATGTACA
CTGAAGTAGTTTGTTAGTCTTAAACAACTATTGTTCCCATCTCTAAAGAA
GGTTGACTGAGTTGAATGaaggatgtcaacattagacaaATTTATAGAAA
TATAAACTGAGCTAGTAATGTTTTGATTGTCACAAGTGCCTTAaaagttt
ttagatttttgactaAGCTTGTGTTATACTTCATTATGAGAATAGAAATT
GTCAACTCAAAATATTGTATTTTGGTCTAATACTGACATCCCTCATCTTA
CTTCTTTATCCTTCTCTATAGATAAAGCTATTCTAATTTGCATCAGTcga
cgcaagtgaaaaatatttttttcatttttaccatCAGGCTATTTAAATca
cttaaattttggtaaaaacagcctttttagcgGAAAACACACAAGAAAAA
GCcttttttggccaccaacggacgctgccctgcctttctaaaatatggcc
tgaccATTTTAAGCAAATAGAAATAGATTCAgcctttctatttttttcag
ctCTTAAAAAAGGATGTTGGAATCAGATAAGGGAatttgacattagacca
agtcaGTTATGGTAGTTTTTTCAATTGGAGTCAAATTAATCATACAGGAA
AgtagaaaaataattgaatgtTCATGAAAGTTTAAATGAAGCAAACAAAT
CTTCTTCTCCTGATCTGTTGATCTTAACTGATCTGATGAACATTGCCTTG
CAGGGCTTAGTTTTATAACCCAtgcaaaaatgttctaaacacTGACATTC
GTGATTTTTTCTGGCTCACAAAATCCAtgaaattaagattttttgattca
aaaagGGAACCAGAAAATATTCAACATATTAGAAAATAATTGATTGTCTA
ATATTTGCATGGTATTATTAATTCCACTGAGAAAGTGATCTTATGATCAT
CTTCCTTAACTTCAGTGCAAGAGGCCAGGATTCAATTCCACTCTGTTTCA
CTTGGTCCTATACGTCATGGCATGTGATGGGAGTTGGGCACaatcactct
gatacaagagagTAGGGAAGTTTGCCGGAAATCTGTTTGGTGACATTATT
GGAATGTTTAAGGGAGAGCTGTTGTTATCCCAAGCTTGATCAAGTAGCAT
GTAGAAGATTTCGTAAATGACCCCTTTGtgaaatgaaatgatttttatta
aaatttattttggtttaTTCATGAATATCAGTTACCATCaagaagttttt
taattttctttgtatCTTTTTTCCTCATCAAATAGAAAAACCTGTGGCCT
AAAATGGCTAAAATGGCTAACAAACTACCCAAACTTGACTCTCTTTTTCC
AGTACTTCTAAAAATGCTGCATATTGACTCAATTGTTCCTATCAGTTTAG
CCAGGTTTAATAGATAAAGtgtaattttaaaacatttagtGGTATTAGTT
GTTGTTCTTCCattcttattaaattttgaggtcATTGATTAGTCAAAGAA
ATTAAAACTTCTGTCTATAACAATATTTTGCGAaggaaatttgtaaacaa
taaTTCTCAGTTGAACAGTGTCGAACAAAGTTGTTTTGCTggttataaaa
agaaattattcatCTTTTAaggaatttattttattttgattaaattCCTT
CTTCATCGTGTTTTTATTCAGCCTACAAAGTAAACTCTAGTAAATTCATA
TTTGGATTCTGTTTACTTTGTATTATGGAATCACATACTACTGCTACAGT
TGATGCCATATTTGATGCCAAAATGCAGACCCTTGTTTTAAAGATGCATT
CTAAAGAAGCAGCTTCTCTTAAAAATACTCAGTCTATGTATAACTGCAAA
GCGTTTCTGTAAGTATAAGCATTGAAAGACGGATTTTAAATAATGCCAAT
GCggataattctttttaaatgcTATCTACTTTACGTAACAAATAAAGCTG
AATAAAGTGATAGATTGTTTTTCTATGgatgaattaaaaagaaaagccAT
ACTTTATGTTTGCTGGCATGAATGAATAGGAGGTCCTCCATCTGTTGAAT
ATTACTCATGGACCACCTTTTTGCAAGCTGGAGTTCAGAATAGCTGCAAC
TGTTTTTATCCTCTTTTACATAATAGACGTATAAAGTTTTATCTCTAAGA
GTTTGTAGATTCCTTATTAAGGGTGGTTTTTATCAATTAGAATGTCAGAG
AGTCATTTTAGGATTTGATGTCAGATAATATCGAGATTTGAGATTTATTT
GTAGATTCTGTGTGGAgtttaaaaaaaagcttttcatttaAGTCTATATC
ATTCTTTTCATAAGGTCTTATCAGAGATGTGATAAGAGTTTTNGCTggtt
ataaaaagaaattattcatCTTTTAaggaatttattttattttgattaaa
ttCCTTCTTCATCGTGTTTTTATTCAGCCTACAAAGTAAACTCTAGTAAA
TTCATATTTGGATTCTGTTTACTTTGTATTATGGAATCACATACTACTGC
TACAGTTGATGCCATATTTGATGCCAAAATGCAGACCCTTGTTTTAAAGA
TGCATTCTAAAGAAGCAGCTTCTCTTAAAAATACTCAGTCTATGTATAAC
TGCAAAGCGTTTCTGTAAGTATAAGCATTGAAAGACGGATTTTAAATAAT
GCCAATGCggataattctttttaaatgcTATCTACTTTACGTAACAAATA
AAGCTGAATAAAGTGATAGATTGTTTTTCTATGgatgaattaaaaagaaa
agccATACTTTATGTTTGCTGGCATGAATGAATAGGAGGTCCTCCATCTG
TTGAATATTACTCATGGACCACCTTTTTGCAAGCTGGAGTTCAGAATAGC
TGCAACTGTTTTTATCCTCTTTTACATAATAGACGTATAAAGTTTTATCT
CTAAGAGTTTGTAGATTCCTTATTAAGGGTGGTTTTTATCAATTAGAATG
TCAGAGAGTCATTTTAGGATTTGATGTCAGATAATATCGAGATTTGAGAT
TTATTTGTAGATTCTGTGTGGAgtttaaaaaaaagcttttcatttaAGTC
TATATCATTCTTTTCATAAGGTCTTATCAGAGATGTGATAAGAGTTTTTT
GCATTCAAATTTTGCATTCACATTTTGTGAAAGTTTGTTTGAACTGATGA
CTTTCTAAGgacaaagaatttttcagtttgacCTCGTTTTGTAAAGGTGT
TAATCTGTGCCTTGTATAATAAGTAAAGAATAAGAGTCTAATATGTGAGA
ACATTAAAGCTTTTTATCTATTTCTGATGTAACTGAATCTCTATAAAGGT
TACTTGTCTTTCTTTTTGGTGGTGTAAATTCAATTGACTGATTATCTTTG
TAGGGTGCAGCTCCCGCTGACGACGAAGAAAAACAACTCCAAGAAAACAC
AGTGATGAATACCGAACCTACTAATGTAAGTCTAAGCCATAATTTACTCT
TTCATGAATTTCTTTATGAAATCGATATGTCAGAATTTTAAgaatctttt
cttcttttgttgacAGTGATGACttgaaatgattttaaaatactaACGAT
GGCATAGAGCCCAtattcaatttatttatttctttacaATGATGTTCTGT
TCTTTCTTTTACAGAGTCAAGGCTCAGATAGGTaagattcaattttttca
aatatcaatAAACAGGTGCTAAACAAACAANTAATGATGTTCTTTTCTTG
CTTTTACAGAGTCAAGGCTCAGATAGGTaagattcaattttttcaaatac
cAATAAACAGGTgctaaacaaacaaactttttaCTGTACCATTGACAGCA
CAATTTTCATTCCTAATTTGGTTCTTCTTCCCTTATTATATCTTTTCTAT
TGTTATGATTTAAAGATGGTCATCTCTTCTAAcctgaaaagtttttgctt
ttCAAATGGTTTAAACCTTTAATTACATTTTCAGGACGGATAGCGACTTG
ACAAAGCAGATCGAAGCATACGAATCTTCAATCGAAGAATGGAAAGACGA
ACTCGCCAAAGCTAAACGAGTAAGAAGCTCATTTTTTGTGCTTTTTCTTG
TACTACGTCAAGCAACAATTTGTTTAGCTTTAGTATGTTTTTGAAGGGAT
AATTTTTGGTATGTTTTTGAAGGGGTAATTTTTGGTTTCATTTTTTGCTG
AGGACTCTATTTTTATACTGCAAAAAGCAGTAATATACAGTCGCTTCGAA
GGGAAGAGCTCTTAAGGCCAGATACGATAATTGCTTTCTTATTAAATTCC
TTCATCGTTGACTTAAGTATGTCATTACACGATCGTGTAATAAGCTTCAC
AAGCTAAAACCTTTTCTATGCCAGATCTTTATCAGAATTTAATCTGAACC
TTTTGTCGATCAAtgctaatttttaatttcttttctttatagGAAATCGA
AGCTCTACAAAAAGATAACCAACGATTGAAAGACGAGAATAGCGCCCTGT
TACGTGTGGTCGGCAGTCTATCTGGACCTCGTAAATagtagaaaagaaaa
ttattttttttacaattgaTACAAGTACACATCacggtttttaaaaaaaa
acagaacgaaaaaaaacaaacattatgGAATACTGAAGAAGAAGAATGAG
AAGAGATATAACCAGCGAAACGGTGAGACCGACTGCAGTGCTTGTTTACT
TGGTCGTTAAAAATACTCTTTAATGATAAggaatgaaagaagaaaatgtt
GCAGTTGGTGTTTGAAGAAACCATGTTCATAATTGCAACCTGAACTTCCT
CCTTGAATCAATACGGCTGCAGAGTCGTTCCCTCTACATCTCATCTCTCA
CCCCGAGCCTCTCTCGCTCGCCCTCCAGTATTATCGTCGTAAATAATTGT
ACAGCGTGTTTTTTTGTTGCCTTTTGCACGCTGGGAATTTTGTATGTAGG
TTTTATCAGtattaatttatatttttctactCATCCCCCATCAAGATATT
ATAATATTTGTTCTGTCTGAAGAATTTTTTCTAATGCTATTTTTTATTGT
GATTTGGTCGATCTTTAATAATATCGGGACTATAATTTTTAGTGTTATGG
TGCTTGCCCTCCCCCTTTTTCTTTCCAGTTCTTTTTTACGTTTTAGTTgc
catttttatgaaaaacagtCTCGTAGTTACGTATTGACTATGCTCAAACA
CCTTTAACTGACACCTTAGCTAGTGAAAAGAAATAGTAACTTTTCCTGTT
CTCTTACTCTTTCTAAATGCACTTTTTTCCGATAGAAGCAGAGGTTACCA
CccttttttagaacttttttttgaaattagttCGCTTACTTTGTGCACAC
AGTCATGTTGATTTAAGAgaaacaaagttttaaaagaaactcaaatattt
tgttgtgCATTTGTTCGTTCGTTGATCAGCATTTGTCAAAGTTACACACA
GTGAGACATTCGTTATTCATTTTGTGATCCCTTTTTGATCTGTCTAAGCC
AACAAGGGATTTACGGATGTATTAAGAAATAATTACAAAGTTatcataag
aaaattttttc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007808TCONS_00007808Clytia hemisphaericatranscript
TCONS_00007809TCONS_00007809Clytia hemisphaericatranscript
TCONS_00007810TCONS_00007810Clytia hemisphaericatranscript
TCONS_00007811TCONS_00007811Clytia hemisphaericatranscript
TCONS_00007812TCONS_00007812Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:157736..166296 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
111.08	101.28	127.66	129.92	190.68	144.08	276.64	301.48	175.22	210.11	128.09	118.6	161.44	145.7	101.05	101.47	175.12	162.95	167.21	188.35	155.85	157.02	152.26	155.79	81.79	100	234.08	213.45	180.78	206.73