XLOC_004603 (gene) - C. hemisphaerica

Overview
NameXLOC_004603
Unique NameXLOC_004603
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000082:538271..547603-

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004603 ID=XLOC_004603|Name=XLOC_004603|organism=Clytia hemisphaerica|type=gene|length=9333bp|location=Sequence derived from alignment at sc0000082:538271..547603- (Clytia hemisphaerica)
GTTGCATGGCTCCGCGGACGAATAAATATTCATTCAGGTAATCTTGGACG
CTTGACCAGACCAGAATCAAAATGGCGTCGCAAGTGGCAAGAAATGTCAG
GAGAGTTGGCAAAGGTTACATTACTCGTCCGAGAGTCAAGACTCCAGCTG
ATTATGGTGGTCTTATTGTAAGTCAATATCTTGATGAATATTTCTTCTAA
GAATTACAGAACTTTTTTAACCTGAATATTGTTTACTTTTTTAAATTTGA
GACTTTCTTTTTCACAGCCTCACTATCCTCCAGACGATCTCAATCGAACG
GAATCGACGATCGAACCAGTCGAACCAAATCGAACGCAATCGACCGATTG
AAATTCGATTGTCGAACGCAATCAAATCTCAATCGAATATTACCACAATT
TTCAGATTCGATTGATATTCGATTACGTTCGATTGATGTTCGATTGCATT
CGATTGCGTTCGATTGCGTTCGATCGTCAATTCATTGACCCCCGGATTGT
TCATCGCATAATTTCTACGGGAAATCGAAAGTAATTTCATTCGGCTTGTG
ATATTTGACAGTTAGTCACACTAGCGTCCAGCCAAAATGCATATCAAAGA
TTAATGCTGCGCAAGCTCTATATTGTTTACTTGACTCTCAAGCAAAAAAA
TGTGCCGCAAAACTTCTAAAGGGATTCATGAAAAAATAACCCGGCGCATT
TTAATGAAATTAACATTTTTAAAAACTTTGAGAAATTGCCTAAAATTTGA
GTCATAGAAGAAAAAATTTGAGCCAAGCCAACCTTGAAAACTAATTTGAA
GATCAACTTCCCAAGAAAAAGATCTACGGGAGAGGCGGAACCCACCTAGA
TCCACGCACCGCCGGATAGGCTATTTCCCGGAAATTTTGCCGGACCTCAA
ACAGTGACCGATATACATGTGCGGATTTGTTTTTACTTTAGCGTATAAAC
TAGGCCTTAAAATTCAAAGCGCTGTCTCGGGAATTGAATGACAAATTTTG
GTTGGTTGATTTTGGCTGCTGTAAGTTCGCAATCTGTCATTTTGTCTCAT
TTTAAGTTTTCAAGTTTTAATTGATTGTCTTGGGATCTTGAATCTGATTC
AGGTAACTCTCATCCTTGTTGTTAAAATACATCCTGTAGATGACTGATGT
TGTTTTTTTCTGAAAGCTTAATTTCCTAGTGTGACTAACTGTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTGCGTTCGACAA
TCGAATTTAAATCGGTCGATTGCGTTCGATTTGGTTCGACTGGTTCGATC
GTCGATTCCGTTCGATTGAGATCGTCTGGCTATATTCCAGTTGTAATCGA
TGATTGATTAAAATCGATAGCTAATCAATATTAATTGATGAATTAGATAT
CAATTAAAATTTATAATCGATAGCTAATCAATATTCACAATTTTTTTGTC
CTCAATTAGCTACCGTCAACTGCTCTAACTTGGGAGGATTGGTCGAAACA
TGTGACTGGTTGATATCTGGTCACTGGTCTGTATTTTCACTTACTGTTAA
ATCTATTTGACAACAAATTTGTTTTGATAACTCCACCAAGTTTATCAATC
ATACTTCTTCGTTCCTCTTAGAGTGCACAGACACTCGCGTGTGTTCCACT
ACGGATTTTTTTTATATTTCGATTTAACAGCTTACTCAGTCCATTCAGTT
AGGAACATTTGGCGAGTTCCTGTACGCGGCCGCAATCAAAAAAATCATAA
CCACACTCATAAAAAAATTGTGTTTGTGTCTTTTTTTACCGTTTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAGACATAAGTGTGAGAACAGAGTAATCAAACT
CGTTAGAAAAAGTACCATTAGAAGTCATAAAAAATCAACTTGAATAAATG
CAATCGAAATTCCAGAGACCTTCATAATTCCCCAAACAACATTACATTAC
TATTTCAAACTCCCATCACATAAATTTTACAATTACGTCAGAGTAGACTA
CACTCGCCACCGAAGAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTGAAAG
TTTGTCTCAGCCTTTTTATAATGAGCGAGACATACGTTCTCTGATTACGC
AATTTTCATATTGACATTTTCGAGGCATTTTGATGTAACTGTCAGTCCAG
TGCGAAAGAGAAATCGTGTATTTTTTAATACGCCGTTCATTAACTCAAAT
CAAAATGACTTTGGAGGTTCGGTGAAATGGTGGCTGAATTGCCATCCCAT
GTTTTGTCAGATAGTCCCAAGTTGGAGCAGTTGACGTATCGATTGATATC
GATCCAAATCGATATCGATTATTAATCGAATGGAATCGATGGAATCGATA
CCATAAGGCTGATGGAATTTAATGTTATGTTTACCGTAAGCCGCCCGCAT
GTTCAAAAACCTGCCGCATGACGTTGTCATTAATTGCAATTTTTTTGAAA
AGTTATCATTATTTTCCCTTCGTCCTGCACGAGAGAGAAAATTTTGTCTT
TCAAACGAGCTTTTGACTGTTTAAATCAAAACAAACAGCCCAAGGCCTTT
TAAACTGGACAGGCGAACGGCCCTTAGTATTTGCTGACACCTTGCGCAAT
CAGTTTTATAATATTGCGGAGATAAGATTGTATAATTTCTAGACGGAAAG
AAAAAGCTTTTCATCTCTTTTAACCTCAATAAAACAGGAATCCAAAGAAT
TGATTAAAAACACACGAGAGGTCATCAAATTCGGAAAGTGGATCTTACGA
TAAACTTGAAATCCAATTCCATCGGCCTAAGGGATCCTTGACAAATACAT
ATACAGTAACAGTAAAAATATTTCTTATGTTCACTATTTTGTTGTCACTA
TTAATATTATGAGAATCGTTTATTCATTTTTTCTTTAGTTCTGTAATAAT
TTTTCAGTTTCTTCTAGGTTCCCCATTGTATTAGAGAAATCTATTTTTTT
TTGTAAGGGGTTATCCTGCTGTGTTGCAGCGAAAATATATTCAATTCAAT
TCAAAAAACTTTCGAATTTTTTATCGGCATTGCCCAATTAGGGGGTGGGG
GGTCCAACTACATACCGATAAAAAAACAAGTATTGGGACGAAAATCCTTT
CAGCCAATTTCTTTCTGATTTCGTCCACAAACTCCACTAATAGCAACTCC
GGAAGATTTTTCAAATTTTAATATTTTTTTCAAAATCTATCCTATCTTGT
AGAGCTTTGAAAAGAAAGAAAATGAGGGGCCATAGGCCTCTAGAGGATAT
AAGTGGTTGTAAAGATATTCAAATTTTAGTGAAAATTTGACTAAAAATGT
CAAAAAAAAGGTTAGGAAATAGCTTGGAAAAATTCGAAAAATGTGTATCT
TTGTATTTCTTTTTTTGAAAAAAGAAGACATTGCATTGTTTTATTTTTGT
TTTCAAAAAAAATAGCTTGGAAAAGGTTGAAATGAGTCAAAAAAGGTGGT
AGGACCCATTTTCAAGGGGTCTCTGGAAATGGAGGAACAAAGTTATAGTT
ATAAGTAACTTAAGTAACTAAGTAGTAAGTCGGTCAGTCATTTTATGAAA
AAATTCAAAGAACAGCTTTGCAAGAAAAATATCCCTCTAAAAATGAGAAA
ATTCTTATTTGCTTATTACACTCCTGAAATATCCTAAAGACTTAACTGGG
TTTTTGTATACATTCTTTCGAAATATAACCATTTTTCAAACTGTGTCAGA
TTTTTAAATAACATTTTACTCTTTAAACTAAGTAAACAATTGATTGAATC
TTGACTGTTTGACTACTCTCTAACTGAAGAAGAGAGTACCGGGTGTCCCA
GAAAAAAGGCCTCGTCTTTGAAGTGAATTTTCTCCATTTCTATCAACTGT
TTGAAGAATCAACCATTTTGCATCATGGAAAGAGAAGGGATAAACTTCCC
AAAATATGAGGGGTTGTTTGTCAAATTTGATCAACTAGATCAAAAGTTAT
GGTCCAAATACTAAAACATTACTTTTCAAAAAAGTCGAAAAAAGGCAAAA
AAAGAGGGTTTTAAATCTATTGTAGGACAGAGACACAAATGTTGTTTATT
CAGCACTTATTTATGCGATTTTTAACCATTCCTGTAAAGTGTTTCAAATT
ATTTTAGGGTCGAGATTAGCTGCAACATTTCTGATTGAAGCTTTCAATTG
ATCAAGGGTTGCAAATTTGGGGTTGCTCCCGGATCTGTTGTTTCCTGTAA
CCCCACAAAAAGAAATCACATTCAGTGAGATCAGGCAATCTTGGGGACAT
CTCCTTGATTGTTGACGGCCTTTGGAAATTGGATACGAAGAGAACGAAGA
AACTTTGATTGTTAATAAATTGATAAAAGAAGTGCTTTTTTATGATGATT
TAATGCCCTCGTTTTTCGCCTTTTCTTAACTTTTTTAGAAATTAATGTTT
TAGCATTTAAACCATAACTTTTGATCTAGTTGACCAAATTTGACAAATAA
CCCCTCATAATTTAAGATTATCCTTCCTTTTTCCAATGCTAACAGATTGA
CTCTTTAACAGTTGATAGAACTCGAGAAAATCTACTTAAAAGAGGGGGAC
TTTTTTTCTGGGACAACCAGTAGGATAAGTGGAAGAAGGGGCATAAAGTC
CTCTTTTCCTTGGCTAGATCTTGTACTTCACTACGTCTGAAACGATTACG
TGCTGAGTCGACCGAAATTTGGGCAAACTGGGGAGGCAAATTTGGTATTT
TGGCACCCCTTATTAAGAAAATTATCGGGGACAGGGCGATTCCCTTATTT
GCCTCTTCTCTATGTAAAGGATATCAGGGGAGACAATTGAACTCAGAGGA
ACATTCTAGAGTGCAATCTAATTTTCTTTGGGCAATTGTTCTGGAATATG
CCACTCCATTTTATATTTGTACAGGGGGTGTTGACGAACATTTACAGGGA
TAATCGGAAAAGAATTTCCAGGGGGTATAAAGTAGTATTTTTCATTTTTC
CAGGGTGTGAAAAGTTATTCTAAAATGTCCAGGGGTTGAAAGACTGATTT
AGTTCGTCATCACTCACTTTTAAGATGTGAAAAGAATTTTCCCAAGGTTT
CTTTTGCAAATTTGCCATTTTCCACGGGGTATCCGCATATTTCTAAGAAT
TTTTTTGCTTTAAAAATTTTTGTGCACCCTCCTGTATTGAAATTTAATGA
AACAGCCCTGAAACCCTGAAACTTTATGATTTAGGTCAGAGTCACCATGT
TACCACGTGTACATCAGCTATCAAAGGAGTGTGACATTCTTACATATCTT
TGTTTTTGCAGAAAGATCCAGCGATCGAGCGATGGATGACGATGAGGGAA
ACGACCACGCCCCATTTCAAATGGACACCTAAATCTTTTGGATTGATCGC
TTTTTGGTGTGGAGTGGTTCCTTACGCCATGATGCACTACGTCCACCAAG
AAGTGGTATGTTCTTTTCATTTGTTGTTCTCAACTTCAGTTGAGCTACAA
TCTGAGAATGTCTGTCTGTCTTTTGATGGCATTCAAAAATTGCGTGAGGT
TTTCAAAAACAGCAAAAAAGAAGAAATTTGAATATCCTTTTTAAAAATAA
CTCTTTTCAAACGAAACTTCACAGTATTGGTTCTAAAGGTGATATAAGTA
GGTTGAAAATTTTTTTTTTGTACAATGGGCCAAAACTGCGGCACAAATCA
AGAAAAACACTATGTTGATAAAACAGCAGCCACAAATTTGTTCAATGAGT
AAAAATCATTTTTTTCAGATGAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCAGAT
GAAACTCGTAGCAAAAGGGTTTATCCACAAAATATCAAAAATGGAACCAA
AATCATTGGGTCACTGGGCTAGAATTGCGGCTCAAAGTTGATGATTTTTT
CATATATGCTTTGATTGAAGACACATTTTAAGCCCATTGAAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGTACTACACA
GCAGCCACAAGAATATCAACGCTGTGGGCTAAAAAGTGGCTGTGATTGAA
AACCTCACTTTTTGGGGTTCTATTTTTGAATGCAATCTTTTCAAAATTTT
GATTTTTAAGGGCTTGGTCACGAGTTTTAGCCTCAAAACTTTGGGGCAAG
CTGGAGATTTCAAAAATGGTCGGATTTGGCTGAAATGCTGCACACTTGTT
CCTTGGGTGAATATCTGGGGGTGTTTTTTTCATTTTTTGAAAATTTTGAT
TTTTGGGGCCTGGAGACGAGTTTTTTGCCAAAACGGGGAGGAAATTTTCA
TATTAGGGTCTACTTAGAGAAAAAGTTATCTTGTATCAAAAAAATTTCTG
TTGCTGTTTACAATTGGGCCTACGAGCAGGGGGGGTCATGCAGTTGGTAC
CAGGCATCATGATGACTAACTGCAAAATTGAAAATTTGAGAGCACACCCA
CCACCCCTTAGCAGTTAGTACCCAAAAGTACTAAGTGCATTTGCCTATTG
ACAGGTTGACACCACCTCTCTTTGCACTCAGTACCCCCGAAATACTAAGT
GCCTTTGTTTGACTACTTGCAGGTTAACACCACCCCTTTTTCCACCTAGT
AACCCGCAGTACTAAGTGCATTTGACTATTTCCAGGCTGACACCACCTCC
TCTTCTGCCTTGTTTAGTGATTTTGAGTGGCTGAAACTCAAGGTAATCAA
TTTTTGAAACCTGTTAGTACCCTGGGGTTGACACTAACCTTGGTAATTTT
TCTCTATTTGATTTATAACAAACACAAAGCCTAACATATATATGATACAA
AGCTACTAAATAGTGTCCTAGTAGGTTGGTTCCCCTCCCTTGAAAATTGA
AAAAAAATTCTATTTCCCCTCTTTTAGTCCCCCTCCCTAAAGTTTTTAAA
ATAATCCCCCTCCCCTTGAAAATTTTTTTTGATTTTTTGCTCATAACATA
ATACTGCTTCTATTCATGTTATCTCGTCCCTATAATATAAAACACTATTA
CATGTTTTTAGCTTGAAGTTGAACAGATATATTTTATGTTTTATGTTTGA
CACCAGAGAACAGAAAATTTTTTCCTCAGATTTTTTCTCCCCACCCTTGA
CTTTTTGGAGCTATTTTTCTCCCCCTCCTTTTGATTGCGGGCGTCCCCGA
GTCTCCTTTTGTTTGCGGGCGTCCCCGAGTCTGTGACATGGAGATGTTTT
TTGATTATCAAGCTTTTTGGTTGTGTTTTCGTATTATTTATAGTCAGCTA
GGATGATCAATATGTTTTCGAAACTCCCACATGAGAAAACAACAAACTCA
TAGCAGTTCGTTTCGGCCAATTTGAAGGTTTAAAATAAATTGTTAATGAG
AAAGGTCGAATGTAAAGTGTTTCTGAGTACCTCGAGAAAGCAGCCGTTAC
TTATGTAATTTATGGTGATTTTTTCAACAGGCGAATACCTTTTCGTTCGC
TCTGCAGTTCTGCTTCTTTTTCAGTACCAGAACTAGAATAAAGAAACTGC
TTTGTAAAACACTTAACTTTCCTTTTTACGATTCCAGAAAGACAGACTGG
AAGCTGAAGGAAAAGAAGCCCGATTTTTCCCTTTCTCCGACGAAATGCCA
TCACGTAGACCGGATCCGTTACCTCCCCGTAAAGCGGGCGTTCAAATCGA
CCATTTTTGATATTCTGATATTAAATTTTTTTTCTTAATTGTATATTTTT
ATGAATATGAAAGACGTGTAGTTTTCCCAAAAAGAATATCCTTTTTCTTA
GAATTTCTGATGATGATGAGCTTCATTTACTGTCTTTTTCATAAGACCTT
GTTAAAATAAAATGGAAAAAATGGAGTCCATCTAAGCAAATCAAGGGTTT
TGACCATATGTTCAACTTGTTATCTATCATATCTATCATATTGTCAACTT
GTGAACAAAAGTGTTTTCGTGTGCATTTTCAGATTTTGTTTTTGTAACAG
CAGTGTAATGAATCATTCTTATTTTTAAAAGAGATAAAACGGTTTGGGAA
CTTTGGCCTACAGTTGCCTTCTATGGATCTGAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00008186TCONS_00008186Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:538271..547603 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
256.12	268.61	305.98	330.89	200.74	174.68	206.86	216.72	190.78	185.65	163.43	152.24	115.33	120.39	125.29	130.51	230.92	211.13	88.92	90.81	213.27	212.53	173.87	146.94	162.24	159.86	153.59	133.7	112.53	107.41