XLOC_004784 (gene) - C. hemisphaerica

Overview
NameXLOC_004784
Unique NameXLOC_004784
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000086:438806..442687+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004784 ID=XLOC_004784|Name=XLOC_004784|organism=Clytia hemisphaerica|type=gene|length=3882bp|location=Sequence derived from alignment at sc0000086:438806..442687+ (Clytia hemisphaerica)
TAATGATAAAGAATCGTAGATTCGGTATTATTTAAAGTAAGGCCTCCAAG
ATGGTCCAAGTCACTTCTATCACCGCGAAGAGTTcgaattcaaaagtttt
cattttattcttcaTTCTTCTGACAGTGACAATTTTTAAAGATTCAATAT
TTTGTTTAAATCGTGAATATCAAAATGTCCGAAACATCCAAGTGGTTCAA
CCAGGCCATGATCAGCCAACGTTTAACGCCGAGACCGTGGTAAAAGCAAT
CGGTAAACTTATTATGAAGAGGAATGAgaaatttgattcaaaattgaaaC
AGATGCAACATAACACAGATAATTCGatgcaaaaatttcttcaactttta
tCCAAAGTAAGTTGCTCAGTGTTAAACGAGACAATTCCACCGGAATCAAC
ACTAATGAAACATCAGAATTGGTTCAAAAGATACATTCTAATGAATTGAG
TTCCACAGTAAACATAAGTAGCTGCTCTAAGGATTTCAATAACTGGCTGG
AGAGCAACAATGTCTCACAACACAGCCCAGAGATTGATGTTTACATAAAA
ACGAATTGTGGTGAAGCAATTGAATGCAACAAAACTTCTCTTATTGGACC
GCTCGCTGTTTTACAACAAGAGATCTCGTTAGAATGGCTTTATGAGAACG
AGCTCAAGTTTGTCAAGAAAGGAGGTTGGTGGCAACCTGAAGATTGTAAA
CCAAAGCAATCGACTTTGATTGTAATCCCGTTCCGAAACCGTGAATTGCA
ATTACCTATCCTTCTACGACAGTTACATCCAATCTTAAAACGGCAGAAAT
TACACTACAGAATTCTAGTGGTGGAGCAAACTGGCCAAGATAAATTCAAT
AGAGCTAAATTATTCAATATCGGATTCGATCAAGGTTTGAAATTATTTCC
ATATCAATGTTTCATCGTACACGATGTTGATCTTCTACCTGAAAACGATA
AAATCGATTACGGTTGCCAAGTTTCGCCGAAACATTTATCAGCAGGTGTA
AGCACTATGAGGTATATTCTCCCCTATAAGGAAATCTTTGGTGGTGTTTC
ATCCTTGTGGTCCAAACATTACCGGCAAGTTAACGGAGCTACCAATCTAT
TTTACGGATGGGGTGGCGAGGACGATAATTTGTATAATCGGTTACGGGCG
AGCGGACTGACGGTACACCGACACTCTATTTCAGTTGCACGATACAAAAT
GCTGAAACATTCAAATAAAAACCGGCCAACTGGAAACGAGCAGTCGAAAC
TGAATCAAAAGCTGAGTAACTCCAATCGGTATTTTGCTCAGGATGGTCTG
AACACTTTACAGTATGACTTGGTTAGTGTTNAGTCGAAACTGAATCAAAA
GCTGAGTAACTCTAATCGGTATTTTGCTCAGGATGGTCTGAATACTTTAC
AGTATGATTTGGTTAGTGTTGAAGAGAAGCCACTTTATACTCACGTCAAA
GCAAACTTAAGAATGgataaagaaaagtttttattttagtttgtgtGCTT
GCGTCCGAAATTTTAGGGTATATTTTTAAGatacttttattttcagtttt
aggATAGAAAAGAGatactaaaaaaatattttgaacaaaGGGACATAAAA
TTGTATTAGTTATTTTTGCCACTGTTTATAGAGTAAATCCTTGCTTCACA
CTTCTCTATACAGCTGGAGCTACCCTGTATCACAGACATATTACAACATA
CCTTAAATCCCTNTGTTGAAGAGAAGCCACTTTATACTCACGTCAAAGCA
AACTTAAGAATGgataaagaaaagtttttattttagtttgtgtGCTTGCG
TCCGAAATTTTAGGGTATATTTTTAAGatacttttattttcagttttagg
ATAGAAAAGAGatactaaaaaaatattttgaacaaaGGGACATAAAATTG
TATTAGTTATTTTTGCCACTGTTTATAGAGTAAATCCTTGCTTCACACTT
CTCTATACAGCTGGAGCTACCCTGCATCACAGACATATTACAACATACTT
TAAATCCCTCTCTCTCTCATACTAAACCCCCCTCCTGATAAGAAAGGTAC
TATGAGGACTATGAAAGCCCCCACTGGAGACAATTTTCCCCTTTGGCTTG
GAATTATCGTGGTTTGATGACTAAGAATGTTCACTAAATTTATCTCGAAT
CTTACGAGTCTCAACTTAACATTTCATtacttgaaaaatgtaaaatatga
aCTTTTAGGGAGGCCGGTCTCTCACATTCTCGTGTCTTTTGTCTACTGAA
GTAATAAAGACACCttttttcagtaaattttgcaACCATTGCTTAATTAA
AACACCAGAAGGCGGAATAATTCAATGGAATATCACTTGGCAACTGCAAG
ATTCTGATAATTGATAAAGTATAAAGAATTTTCTGCTAACAAAACGTGTG
AAAATGTGATAAACTTCCGTGAGAGAGCTTGGCAAGTGGTAAACAAGGTT
AAAGATATAATGATAAAGAATCGTAGATTCGGTATTATTTAAAGTAAGGC
CTCCAAGATGGTCCAAGTCACTTCTATCACCGCGAAGAGTTcgaattcaa
aagttttcattttattcttcaTTCTTCTGACAGTGACAATTTTTAAAGAT
TCAATATTTTGTTTAAATCGTGAATATCAAAATGTCCGAAACATCCAAGT
GGTTCAACCAGGCCATGATCAGCCAACGTTTAACGCCGAGACCGTGGTAA
AAGCAATCGGTAAACTTATTATGAAGAGGAATGAgaaatttgattcaaaa
ttgaaaCAGATGCAACATAACACAGATAATTCGatgcaaaaatttcttca
acttttatCCAAAGTAAGTTGCTCAGTGTTAAACGAGACAATTCCACCGG
AATCAACACTAATGAAACATCAGAATTGGTTCAAAAGATACATTCTAATG
AATTGAGTTCCACATTAAACATAAGTAGCTGCTCTAAGGATTTCAATAAC
TGGCTGGAGAGCAACAATGTCTCACAACACAGCCCAGAGATTGATGTTCA
CATAAAAACGAATTGTGGTGAAGCAATTGAATGCAACAAAACTTCTCTTA
TTGGACCGCTCGCTGTTTTACAACAAGAGATCTCGTTAGAATGGCTTTAT
GAGAACGAGCTCAAGTTTGTCAAGAAAGGAGGATGGTGGCAACCTGAAGA
TTGTAAACCAAGACAATCCACTTTGATTGTAATCCCTTTCAGAAACCGTG
AATTGCAATTACCTATCCTTCTACGACAGTTACATCCAATCTTAAAGCGG
CAGAATTTACACTATCGCATCATGGTTGTCGAACAGAATGACCAAGATAA
ATTCAATAGAGCTAAACTACTCAATATCGGATTTGATCAAGGTTTGAAAT
TATTCCCATATCAATGCATTATTATACATGATGTTGATCTTCTGCCTGAA
AACGATAAAATCGATTACGGTTGCAAAACATCTCCAACGCATTTATCAGT
GGGTGTCAACATCTTCCGATACATATTACCATATAAGGAAATCTTCGGTG
GTGTATCCTCGATGTTATCAAGTCATTTCCGAAAAATTAACGGAGCTACA
AATCTGTTTTATGGCTGGGGAGGCGAAGATGATAATATTTATTGGAGACT
TCGAATGAATGGTTTCAATGTTCATAGACAGTCTATAAAAACTGCAAGAT
ATACGATGATGAACCATCCACGGAATGGCTACACCAAACGTGACATTGAG
GCTCAACAAAAACTGAATTACAAACTTTGGAACTCTACAAAATTTTGGAA
AGATGATGGTCTGAACTCCCTTCAATATGGGTTGATAAGCGTGGAAGAAA
AACAACTTTATACTCATGTTAAAGTCGATTTACAAATGGATaaggaaaac
tttttattttgacatttcaGCTTAGAATTTAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00008549TCONS_00008549Clytia hemisphaericatranscript
TCONS_00008550TCONS_00008550Clytia hemisphaericatranscript
TCONS_00008551TCONS_00008551Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:438806..442687 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.52	0.54	3.03	3.11	3.41	2.09	0.61	2.31	0.54	0.44	0	0.03	0.14	0.2	1.18	1.64	0.6	0.68	0.36	0.68	0.49	0.27	0	0	0	0