XLOC_005033 (gene) - C. hemisphaerica

Overview
NameXLOC_005033
Unique NameXLOC_005033
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000089:271910..282705+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005033 ID=XLOC_005033|Name=XLOC_005033|organism=Clytia hemisphaerica|type=gene|length=10796bp|location=Sequence derived from alignment at sc0000089:271910..282705+ (Clytia hemisphaerica)
ATTTAAAGAGAACTCTCATGTTTTCCTAGTTTAATCATTTTTATTAAAGA
AGTCAGACGAGGGAACAGCTCATGAAAGAGGATCAAGAATCCAAAGATGT
CTTATTCAACGTCGTCACATAAATCAGTAAGTTGGCTTCTAATCTTTTCT
TCGTGATATCTGAGAAACTGAATCCACGAGTAAACTaaagatttattatt
ttttaatactttgttccatttgttctattttttctttggaTAATTTTGGG
GCTTTTCTAATCTTTTTACTGTATTTGAAAATGGTATCATCGTTCGGTGA
ACAAATCGACACAAAAAGTGTTCAATACCAAAGTTagtagtggggtcgtt
tagcataatttacaggaaaaaaataatatatagctgaaactttctccaga
ccttctctataggatgcttatgcctcaggaaaaaaatcTCCTAGAATCCC
ACTGGTGGAACATTCcctttttgggcaatttcttttttccccaggcaaaa
ccctaagggcgaaatgttttgaaaatttcaaactcattttcagacaatat
cagaccattcgaaagctctcaaaaaactatacagaagacttttaaggtgg
tcgttaacactTCTGAGATAGGATCATCTTTTTCGGGTcgatttttcaac
ttttggtttaaattaaagtttgaaccttGCTAAACAATATCCCNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTATTTTTAGAAATGACCTCATGACCC
CcgtctttgaaatttctaacatttttttctatttttagatcaAGATGATA
ATGAAGTATCATCATACAAAATTTAAACAATATATCATTTatactttttg
agatatttcaatttgaatattttttgacattttcaaaaagtttgttaacg
accaccttaaaCGGGTAtggccgatttcattacctaactcgagatatttc
atgcgcaagttccacttttcgccacattttggtctaaaattgaccaaaaa
ttgcatcttctgtgtgaattatctcgagttaggtaatgaaatcggctata
cccgtctaaaagtcttctatatagttttttgaatttttgaaaaatataaa
tatattttaaaatcaTGTAAATATAGGTTGAAATCGGCCAtcttgaaaat
ccaaaaatggACGACCATCTTGTTGAAGTTgaaaatatcatcaaaatcaa
tcAGAGCAGAGGGTCCTGATGAGGTCTGGGATCTTTGGAAAAAATCGTTT
AGAAAAAGGTTTaggtttttatgtttttttatggaATAGAAAACCGGCTT
CTCTGATTACCCCAAGTGTTTTGGTCGTTTCTATTCAAAACgcttttgtt
tttttagctTTGATTAGCTCGttaagaaattttcaagaagAAATGGCTCG
TCCTAAAAATTGGCTGATTTCTATCGTCTCTAAACTTTCAGTGTGATgta
cacattttattttttattagaacccagtttataagaatattgaggctgaa
attcgtcgaaaaattaagaacatcgtaagaatatgccagtttggaaaaaa
aatatcaagaaactacaattttttcccttttcaagcagttttaaccgaac
ttagggatggattttctaaaatcgagagtcaaatattgtccaaattttac
caattttaagtgctccttattttgcatgatattgccgatttagagtagtc
tgaaaaattaagaatgcatttaagaacattttaggcggaaaactgccaaa
aaaaataagcacatgcaggctcagccaaattttaagtgttctaattaaaa
aaaacataaccagatgtaacaaattttacgccattttaataCCTGTCATA
ATCATCATAATGATATTGAATTGTTTCGACAATATTTGGTCGAAATTCGG
GAAAAGCATATTaaatttcttacttttttacATTCAGGCGTTTAATCTAA
CGATGCGGTCGTTATGCGGTTATATCATTAGAATTGcaaggaaattctga
gcaagaaaaatATAGGTATCTTGTGGTCTGAGTGAGGTGTTCCCAAAATA
TAAGCCTCTAAAGTTTACGCATAAttaaactcaaaacaaaagaatttcgt
caCGTCAcactaattatgcagatttttttatcaacgacaaaagaaattca
ttaacCGAAACAAGctcccttaagggcaaaagacctggtatatgacgagt
cgtatttccattgttttcaagaagctgttttgcCATCTCTTTACACTTCT
CTGTTTTAGCCGATCAAGAAAAGAATGCTTCAAACTTTCCTTCTGTCTAA
AAACGaaattaaaatcttaattaaTAGCCGAGATATTAGCGCTTTAAACT
TTAGAGCAGATTTGCGAACTATATACATATGACAAAGAGGAACATTAgat
tacaatttcttttcgCACCTTTTGAACATGAATATCTCTACAATTACTAA
TTACTAATCAAACAGCCAATTATCtctctcaaaatttcaaatcactgtag
aaaaagaTGAGAGTTTGGCCTACCATATCAACTTCAATAGacttaaagtc
acccatagcttggNtctccttgtcgatcgggcaacgtcggccgtttgaga
agcgtattgttggtcggaccatactgctttgtttctaactgtcaaaacaa
agatggcagaaaataggcaacaacttttgctctttcgctacttttctttg
ctttggtttaattatatgctttgatgagttgaattggatcatgatttttg
tacgattgtcacaaggaatggtcgatagtgaacttttcttaatgttcctt
tctggatttgatgtttcgtttacattctgttggtttggaatgagctggaa
tgagggatgatacaatctcttcttggtcttggaaaaacaggacattttat
caactttcacagctataacttcaattttgtttgtatatttgcaAGTgaca
agtgactgtgaataaatctgaccatgttacctgaaaaattacataactgc
aatatgaaaaaagttttcaccCAACGAATGCAtgccgacaatgcaacaat
gggaatggttgatgaactgattttagctaaaaaattttaacatggagcaa
aattgactggttaatatgattgaatttcccttggtttttttatctacaac
aatgaattaactgctggggttagtgacagttagtgaaaacttgTTGCGGT
TTNAGAAAAAGATGAGAGTTTGGCCTACCATATCAACTTCAATAGactta
aagtcacccatagcttggAGGTACCGacttcatttttggacctacgccgg
tggaggtcctataaattaacctctgtccgtccgttcgttcgtccgttagt
tcgttaccaacttttctcgagattggctcattagtttttcctgatttttg
gcgNaaaaggtttattgcattgaatatggatgtaaataatttgaaatcac
gtcacatgtacaattaaaatttttcttgaacttggagattttcttccccg
catgcattttaaaacgcggaaaactttagttgtgaatttagagatctttt
gcaacgtgtgttttaaacgtggaaacttttgtcgtgaatttggagatttt
cttaccgtcaactgctccaacttgggactatctgacaaaacatgggacgg
cgaTTTGGTCACCATTtcttcaccgaacctccaaagtcatttgatttgag
ttaatgaacggtgtattgaaaaaatggcaaaacgatggagcgtttgacat
cactcgcgcagcaagttacacacgcattatttgttaatcccatcgggcga
taggcggttaggcagcaTGCGTTCTCTACAGTAATTCTCCAATCGttgct
atcagtgaaagttattgtgacatgttatgaaaggaagtatgattgataaa
cttggtggagttatcaaaacaaatttgctgtcaaagagatttaacaagtt
agtgaagatacagaccagatatcaaacagtcccatgtttcaaccaatcgt
cccaagttaaagcagttgacggtgtatgtacatttaaaacgtggaaaact
tttgtcgtgaacttgacattttcttccacatgcatttaaaaaatgaagaa
aactcaagtgatttcctggcatgacattgacaatttattttattttctga
catttttttggaaattttttgctattgcagcatgcttttggaaatcataa
aatggcttctgttaggggaattttttcctatcgaatttatctttcagatt
atgaaatgtttcccagtatataaaaatgagatttttttttttttgtattc
tgtcggaaaatatgaaatcttttccctgttttgaaagatttttatttttt
agcacgtacattatttcaaaaaactccaaaagttactttgaatttttata
ttttttacaattactatttctatttctatttctttattagCATGAACTTT
TTACAAGTTATTTTCGCTAATggaacataaaaaataaataaatgaaaaaa
tattaagcaATTTACAGATTATAAAACAACTATAGTGtacaattcaataa
aagaaataataataatattaaattgaataaaaagtagtaaatgaataata
aataaataaataaaatatgctttattcaataattaaaaaGTCTAAAATCA
AAAGACTAAGATCAAAATGAGCTAGATTTAAGCAGATTTGAGAAGTCTAG
TAGTATATTGAAGTTGAATGTGATTTCTCGGGATTGAACTAAAGATATGA
ATTGTTATAGGCATACTATAAATAAGTATAGATTATATGAAAaaggtata
aaataaaaatatatatttataaaaaatatatacaatatcttatatatatg
aaagtataatgcaaaatatttcatctcattattttgaaaatatataaaac
tttctttggttttcttactgtgaaatattctcctttttgtcattctttca
ttttaaatatttgccctttttggctatataatatttctggaaatcagcgN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTATTCAAACTTTTTAGCTTTCCAGGCCACACTA
AGGGTCTCTTTAAATTCTTCCACTGAGGATGAGTTGACTACTTTAGAAGG
CAAACTATTCCACTGCTTAATACCCCGATAGTATAGGGAGTTACTCTGCG
GACCGCGAACACCATCGTTCCCAAAGATTACTACTAATTCAGAGTCGTGc
gtaaaatcctgtcattacttttttctgattttttgcacaatgatgcaaaa
tgacaatacctaaaatgtggcgaagcccgattttcaaaaaacattgtttt
ccggccgaaaatgccggaaatatgccggaaaaactgtttttttggcattt
tctcaagattttatcattggttttttctgattttttgttcaaagaggcgt
attaacaatgcccaaaacatggccgagttcgatttttgagaaacattttt
ttccggttgaaaatgccggaaatcgccgtgttTCAAGCANTTTTTCCTTA
Tattcatttctatgttttttacacaaaaacattattgataacaatgttca
ccatcaagcatgattcaattgtcaataaaactgattttggcgaccagaac
tttctatttattttttccttgcaacccttccctctccccccatcaacaat
caatgatgaatttattgcgttatgcattttcgctaaaccctatattttct
gactgaatttttttcatttttctcctcgcattgctatctaacaatcatca
tcaggtaggtccattcagcatctagcttgtttttaaTGCATTCCCAGAAG
AAAAGAGTCATCTCGATATCTCAAAGCTATGGGTCTAATTTGGTCTTTCA
ATATTACTCTCATTCACTTAAAAATGTCTTATTCGGAAGCTATTAACAAA
AAAAGGTGTCAGTTAACCTtatgacacccctgtgtcacagatccgctggg
accccagccccactgaaagATTTGGGCAAAATTTCGTTCCCGGTGGATAA
AATACTCTACAATTTAAGCCCCGTTGGGAAATTGACTtggatttcatccc
cattcgaaattcaatgcaaaaatttgctgtccaaaactatccccactgga
tattttaagctcgggaacaatagaaattctttCCCCATTGGGATTGCGAT
AGAAACTTTTATCCCCATTGtgggaaaaaagttccaccggggctgtgaga
caggggtgtcttatgACCTAAGCAAAACTACATAGAGGAACAAGTTATAT
TCATACAAAGTGATATTATCCCGTTTAAGATTACTGTATTGTATAATAAT
GTAACACTAACATTACTGTATTACTGTTTACACGGATTATAAACATCTCC
AGTTTAAACGAAATTGAGTCCACTGAGGCTTGAAGGAACAAAAGATTAGG
GCATGTTTGGGTTGACGTCCCCCTGTTCATCTAgagtataaaaatatttt
ttcttcttatcaAAGTNTTGACGTCCCCCTCTTCATCTAgagtataaaaa
tattttttcttcttatcaAAGTATATTTTCCTCTTTCATCTCTTTGTACA
GAGCCATCATTCATCTGTGATGTATGGGACACATTTTCCAAATCGTCTTT
TCGTTGGGTGTCTACATGGATcggtaagaaaattttttttacgcTTGACG
AACTCTAGTTTAAGTCGAATTGTTTAGTTGAATATGAAACACTAAAACGA
CTTCACGCaatgatatatatttttttctgttatttttcCACCCAATATTA
TGTATGTCCTTTTGGTAGAGTACACTTGCCTctgtacacccccttctcac
agacccgcgGTAGGATTTTTCAACCAGTGGGGATATAAAAAAACGGATTC
AAACTCGCtgaggattgatattcccatatagtttttatggctggggattt
aaattcttttgttttcaagtcagaaaattcagtggggatgggaaaaatat
caTAATATCTTGCATTGAGGATTGATTATTTCAGTGGCGACagaaattag
aaaataattttccaccggagacgatattttggccaatttttcaagTATGA
AgtgttccagtgggtctgtgagaagggggatGTCCCAGTGACCCGTTAAT
GTTTGACCTTAAGAAAACTATTTTTCCTCGGAACTTAATTTCGCTTTTTT
TCACGGTTTTTCGGCAAAATCGCGGAACTTAGAACCTGCGAATTACAAAT
TTGGCCATTTTTCatcaagaaaattgaaaaaatccttCAGAAGATGAgga
aatttgtccaaaatagGGCTAAAGCTTTTAGTTCCAGCTAAAACTAGTAC
CCTTGGGGTAGTCTCTCCAAATAAATGTACGTAAAAAGATTGCTCTGTTT
ATTTATACGTAGATCACTGCATCGATGCTTGGGCATTACTTTTATAAATT
TGGGCCAATTATCGAAGCCAAAGTCATTTTAGACGAACACCAGCAATCGA
GAAGATTCGGCTTTGTGACGTTTGCGTTTGCCAAAGATGCTGagaaaacg
ttgaaacaaaagaagttttattTAAAAGGTCACCGAATAAATGTTGGTCC
AGCTATAAAAAAAGAGGTATGTAGCAGATTGAAAGTTTGATATATAGTTG
GTATAATTTACTCTTTTAGGACGGGGTCCCGCCCAATGTGaatcattttt
cacttactAACGGCACTGTTTTTGAGAAATCTTATACACCAACTACTAAA
CTTAGAGATTTGATTACATGacatttttcttcaaagacACAAGCCGAGAT
GTCCCTTCCAAAACTGAAggcttttttctttccaaaatacAAGACCCGAT
TTTCCTTTAGGAATACAATACAAGATTTTCCTTAATGAATACAAGACGag
atttttcatcaaatatagcacagctttttaaaaatgcaaGGTAGCCTTGG
TCTTTCTTCTAGAGAAAGAGAGCACTCCAAATGATTTGGCATAATTACTT
TTTATAGCACCTACTGAACGTCAATATGAATTCAAGTACTGTGAAAATCG
TCAAACCCAAACAATTTGAACGTACCAGTCGATACAAATACATATTCGac
gagaaaaacaaacaaaagtaCAAAGAATTATCACCAAACGCACCATCATT
TACGCCCTGTGACAGCTATTACACAACATCAACGCCCATCCCCAATTCAA
CGCAGGGAAGCATCTATCCAACACCACCTTGTTCACCGTCTAACTTAATT
TTTAAATCACCGCCCAATCCACCCACTATAATGTCAGCAACGCTATTTCC
GCCAGTGGGCACCCAAACCACTGCTCCAGCATCACAACACCATATGTTCA
TGCCAAACAATATCTTTGTTTACCCACCGCCTGAATTGGTATATTTCTAG
ATATTTCAATGGTAAATGGTTCATACACTTTAATATCATTCATTCATAGA
CATCTTACTAGATGCTTCTTCTCTGTTCTTCGGTTGAACGTTTTAGAGAC
TGtatatattttgtaaatatcttttgtttttatttactaTAGACTTACAT
TTTTTCATCTGTATTAGTTCCTCTTATAGTTCATAGTGTGTGGTTCATTC
GTTTAGGTTCTAAGGCATCTACTGCAAAGTTCTAGTCGCTAGTTTTACTA
TCGCTGTAAATAATGACTAGGTAAAGCATCCTTTTCAGTTTTTAACGGTT
TAGACCTTAATGTCAAGACTTACTATATTGGagctaaaattatattattt
ttttcactccCCAGCCCTTACTTTCATCCCCTTCCTATTTAATCAATTTA
CCCCTTTAGTCTCAGTGTAGCGACGGATATACAGGTTAAGACATATAACA
TTATTACTTATAccttaatatttttaaaagatcaACCCCTTATCCGTCAT
TTATTCCAAGCCCCTAACTTTTAAGACATCCCTTCCTTTTAAAGCTTTCA
TGCCCAAATAATTCGTATTTCttccttttttgcattcacTGATTCCTTTG
CAATTGGATGCCCTTCGTATCCCCTGAGGGGGGGGGCCCTGAGGGCTTAA
ATGACTTTGACGAGCACcatattgtaaattttttattttctatagaacgc
acatttttattttttttatcgtTTACTTATTGTATTCACATACAcagatt
tcaacatttttttttatttgtggGATTATTTTGCACCCGATTTGAAAATA
TCAGAAGAAAATTATCACGATGGGGCTCCTAAATGAACTAAAAATC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00008986TCONS_00008986Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
boule-like 1dTCONS_00008986-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:271910..282705 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.42	3.14	5.47	5.13	19.68	14.07	4.05	4.44	0.75	2.25	0.8	0.21	0.46	0.53	0.21	0.45	0.41	0.34	0.45	0.47	0.12	0.14	4.12	4.18	0.08	0.17	0.14	0.44	3.08	4.34