XLOC_005641 (gene) - C. hemisphaerica

Overview
NameXLOC_005641
Unique NameXLOC_005641
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000102:25424..35610+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005641 ID=XLOC_005641|Name=XLOC_005641|organism=Clytia hemisphaerica|type=gene|length=10187bp|location=Sequence derived from alignment at sc0000102:25424..35610+ (Clytia hemisphaerica)
AAAAAAAGGAAGCACTGAAAAAGAACAATATTAAAATGCAGAGGAAGATA
CAATTGGAACACGTGAACCCATTCTTGACATGCGCAGTATGTAAAGGATA
TTTGGTCGATGCAACGACCATTGTTGAATGTCTTCATTCTTGTAAGTGTA
CAGTTCTCTGTTGAATCAtcaatcatcaaaattttcaaccttgtTTCCTG
GTATATTATCGGCTTTTTTATGATTACTGATAAAGCCCTAGTGAGCACCT
CACCACAAACtgggatttttcatttttccactctgataattttcgaaaat
agaaGCCTGATTGTTTTGAGAACTCCCCCCTCTAAGAGGAGAACTCGCAT
CAGCCTACACCATGGTATTCACTTGCACCCATTAGTAATAGCgcaataaa
gcctgggatactcGAGAAGGAGGCTACAAAATGCTTCTattgttgtattt
ttttttttactttaatctTAGTGACGTGATATCCGAACTAAAACTTAAAA
TCAACCCATTGTATCAAGAGACTGTATGCCAGTTAATTGCAAGTTTTAGG
ACTAAGAAGGAAGACTAAACTTTTCAAGATATCGGGATTTTGAAACCCAC
AAGAACCTGATAGAAAAAGGAACCTTGAATtcttttttctccaatttttt
tttagtttgtcGTGGATGTATCATACGACATTTAGAAAATTCATACAATT
GTCCAAAGTGCAGTACAGAAATTCATAAAACCAAACCCTTCGAATACATA
AGGTATATGTATTTCTGTTTATGTCTGTCCTTCTTTCTTTTCCAGAAACT
TTAAAAATGGTCGAATTTGACCTGAAATTTAGCTCTTTTAGTGAATATCC
TTTAATCTTTTTAGCCTTGCAGGGTTACACAATTGCTTTAATTCGACCTT
CGAATAGTTGGCAAAGTACTGAAGTTGAGAAGTTATTGATGGCTTTATTT
ACGACAACCACAATGTTATAACCACACATTCTATAATTGCGCAACATAGA
TACAGAggagtttctttaactcgaacctctttatTTCGAATGTCTCttca
actcgaacaagttttctcgtcacTTTAGTTAGcaataccttataaacctt
actcaatAACTCAGCTCTTAACTTAAaccaaatttgtgttccccatgCAG
GTTCGAGTTATGTAGACTCCGCTGTATTAAACTCTGATACAAAAGCGTGG
GTAGATTAGACTGGCATTGTAACGTACCAtggcactcataaggttcggcc
tcgcgtgagtactgctctcccagtgtcgttcgagtgtcatggtttACGCC
ATGGCTTGGCAACTCGCGTCTGTCATGttgcagtgtctgtcagcgatgtg
attcctactcctttgggagtaggacccatcccgaatATATTCGGAGGGCA
TATATCTATCACTGTATATTGATGTTTTTCGATCGGGCTTTAGATCAGAC
CCTTCATTACAAGAAATCGTTTACAAGTTAGTTCCTGAACTTTATCAAAG
TAAGTACTTAATTAACCATTCCAAGTCCTGATCAAATGGCAACGAACTAG
AAATAAAAGTGATGGTAAATTTTCGGCCTCGTCCAGGCtttaatggccaa
aatattaagaacagctaagaacattttaaggctttgtgaacTTTATattc
acccaatttcttagaaagtTGCAGGAAAATACTCACAATGGTgaaaatat
gttaagaacattttttaggaTTAAAACTCAAAggtaagaacatctgaagg
cttcaaaaattttagatgtttctataaaaaaaaacgtgtaaaataaaaga
gaaactacGTCACAGTAACTCACTTAAAAAACTTGGAGCGCTAAAAGCGA
ATTCggaatcaatttttttgcatATCACTCTCTACTTAGATGAAGAAACA
CGAAAGGAACATTGGAAAAAGCAGGAGAAAAAAGGTATGGTCTATGACTT
AATGCTCTGACTAGATCGTAGTACTAATACTTTTTTCTTAAAAGCTCCAC
GCAGATGTCTTANNNNNNNNNNNNNNNGAACCTCTATATTTCGAATGTCT
Cttcaactcgaacaagttttctcgtccccttagttaacaatgccttataa
accttactaaATAACTCAGCTCTTAACTTAAaccaaatttgtgttcccca
tgCAGGTTCGAGTTATGTAGACTCCGCTGTATTAAACTCTGATACAAAAG
CGTGGGTACATTAGACTGGCATTGTAACGTACCAtggcactcataaggtt
cggcctcgcgtgagtactgctctcccagtgtcgttcgagtgtcatggttt
ACGCCATGGCTTGGCAACTCGCGTCTGTCATGttgcagtgtctgtcagcg
atgtgattcctactcctttgggagtaggacccatcccgaatATATTCGGA
GGGCATATATCTATCACTGTATATTGATGTTTTTCGATCGGGCTTTAGAT
CAGACCCTTCATTACAAGAAATCGTTTACAAGTTAGTTCCTGAACTTTAT
CAAAGTAAGTACTTAATTAACCATTCCAAGTCCTGATCAAATGGCAACGA
ACTAGAAATAAAAGTGATGGTAAATTTTCGGCCTCGTCCAGGCtttaatg
gccaaaatattaagaacagctaagaatattttaaggctttgtgaacTTTA
TattcacccaatttcttagaaagtTGCAGGAAAATACTCACAATGGTgaa
aatatgttaagaacattttttaggaTTAAAACTCAAAggtaagaacatct
gaaggcttcaaaaattttagatgtttctataaaaaaaaacgtgtaaaata
aaagagaaactacGTCACAGTAACTCACTTAAAAAACTTGGAGCGCTAAA
AGCGAATTCggaatcaatttttttgcatATCACTCTCTACTTAGATGAAG
AAACACGAAAGGAACATTGGAAAAAGCAGGAGAAAAAAGGTATGGTCTAT
GACTTAATGCTCTGACTAGATCGTAGTACTAATACTTTTTTCTTAAAAGC
TCCACGCAGATGTCTTAGTGTAATGACCCTCTTTCAGAGTAATTGTGTGG
GGGTGGTCGGGTGTGGGTGGATTCCCACGGAAATGTacactctctctaat
ttgatcttaAAGGGACCAAAAgaaatttcttcgaattagagaaaggttCG
AAGTACGTAAATTGTTTCAATACGACTTTCTAACTGATTTGTTAATATTT
TAGTTCGTATCTACCGGGTGCactaaaaaaaagtatacaggtttgtcgag
atattgtgagctttaggaataaaatgttttattcattcttttttcatcgt
atagaggatgctctaacttgaattttgagctatcatacattaggtttgaa
aaagtagtgcGAAAGTTAgtttaaaaaaactgacttttctcttgacactt
accttctttacacataaaaataccaaaaaatgcaactatgttcatcaaaa
atcattacagaatttaaaaatatggtaaagcaagctattcccatgaggga
taatatttttggaaaacctgacaaaaagttttggaaatctccaagagagg
tttGGATGTTATGcgtgtgctatgtgagaaaacttttttaaaaatatatc
accattcctcgactagttgctcaaagaacttggatctgcattgagtttgc
tcgtgttggaaatgttcaggACGGGCGAATAAGATGgaaaactgttggca
aaatataaaaaagaagaaaaaaaacaataaaatttataatctcgacatgg
aaaaaaagtcagttttttttaaataactttcaaactactttttcaaattt
aatgtatgatagctcaaaattcaagttagagcatcgtctttacgataaaa
aaagaatgaacaaaaaattcaaatcctgaagctcacaatatctcgacaaa
gttgtatacttttttttggtacaCCCGGTATTACATAGAGAAAATCAAAT
ATAATGTTCGAATAAGAAAGAATGTTGACTGTTCTTTCTCCCGGGCCAAC
CAAAAACATGTATAGAGAAAAGAATATTGCGTGCAATAGAAACTAATTTT
TGTAGTTCTCTTCTCTCGAGTCGTGGTCCATATAAGTCTCACCTTTTTTT
CGATGAGGCTATATCTAATAATAAAGtaaaagcccgaagagctagaagcg
aatctttaacctttctcaggcaagaaaaagggaagcctttaaaatatgct
ccttattttttatgacggattgaatctagcgatttcTTTGTGTTCGAGtg
gtacatttttgaaaatctgtcatttgtgtgaAATCCACGCGTAATTCAGG
TAGGATTTATTTTAATGGCTTCAAATACTAACAAGGAGATTCActtctag
tccttcgggcttatacttcatttgTATCTAGTACTGCTACTAAAAGcctc
aaaatttgtcaaaaaccTCAACAAATCCTCTTTCCCTTTAGATTCAACAA
AGGAAGAAGGAAACAATAGAAaagatgatgaagaagaaaatccaCGTATT
CTTGTCACCCTCAAATATTTCAGGTGAAAATCAGTCCGTTAAGATATACA
GAATTTTCTTTAGCTCTAATCTCTTTAACTCAAATGTCTCTTAAATTAAA
CTAgtcctttcagttaacaatgccttaacCTTCAtagtgtcccccccccc
ccctttataaaggggggggggaccaattttccaattttgaatgggtgagg
gggggaaatgaaaatttgaatagtaaagggggaAAAAAGAGGTGGGAAAA
CATtgatagttggcaaatttggtggggggaattgtgaaatcacttcaatt
ttatctcagcaaccaaggtcagtccacatgatatcatgtgattagatcat
gattgaaaaattaaccaattttcgttctattttgtctggTATTctttttg
cagcaaaattttacgtttgaNTTCAactttatctcagcaaccaaggtcag
tccacatgatatcatgtgattagatcatgattgaaaaatttaccaatttt
cgttctattttgtctagtattccttttgcagcaaaattttacgtttgtgg
caggttgaaatttgagaaatttatacgggtatatggggggaactgatatt
ttcagaattttctggggggaaagcaaaaaagaggggggaaactaaaaagc
tgaaaagtcataggggaaaaaaaagaggaggtagatcaagaatttggtgg
ggggaacaaaccctggaggacactatgaccTTACTCTTATAAATCTAAAT
TTCCTTAACAATTTATATTCCCCGCGGTGTTCGACTTATGGAGGCTTCGC
TTTATCAATGAGCCTTAGATCTAGATTTATGGGTCAACTTCAGGGGCTTA
TGAGTCCATTTCGTCTGAAACCCTTTGTGACTTGTGGCACAGAATGACTT
GTTTTCGTTTGGAGTGAtcgttttttggacctaccttaaggtagtccttt
aaattaacctttgtccgtccgtccgtccgttcgtctgttgccagcttttc
tcgggatcggctcattagttttttctatttttttgcacaatgatgcgaaa
tggcaatgcccaaaatgtgagggagcccgattttcgaaaaaaaaaaattt
tccggccgaaaatggcggaaatatgccggaaaaactggtttttcggcatt
ttctcgagattttatcattagttttttctgattttttgctcaaagatgtg
tattaacaatgcccaaaacatggcctagtccattttttgagaaaatttcc
ggccggaaatatgccggaaatcgccgtttttttggattttcattggactt
tttccctataattggttgttttttcattcaaaaacattattaatagcaat
gtccaccatcaagcatgtttcaattttcaatgaaattgatttttgaagcc
ggaactttctaaaaatcgccggaacagccgattttcgccggaaaaacagt
attccttgaatttcttgagctgtactttatattttttcatgaaattttgc
acactgatgcaaaatgtcaatacctaaattgtgacggaaaccgatttttg
aaaaaaattcatttccgaccgaaaatgccagaaatatgccggaaacactg
gtttttcggcattttctcaagatttcatcattagttttttctgatttttt
gctcaaagatgcgtaacaatgctcaaaacatggccgagtccgattttgag
aaaaaaaattttccggcgaaaaatgcctgaaatatgccggaaatcgccgt
ttttctacattttcattggactttttctttacaattggttgttttttcat
tcaaaaacattattaatagcaacgcccaccatcaagcatgtttcaatttt
caataaaattgattttactcCCATCccctcttcccccatcaacaatcaat
gataaaatttaatgttttatgcattttcgcaAAACGCTCTATCGTCTGGc
tgattattttaatttttctccttattgccttattatctagctttcatcat
caggtaggtccattcagcatgttgcttgttttataTCAATTATCTTTGAT
TTTTAGAGGCACATCACGGATGGAACGTATTAAAACGGAAAGGGTATGTT
GCaagaaaatacactttttcgaccATAGGGGCGCGTGCATGCGCGTGTCA
cttttttcacacttttttctacTGTTTTTAGGTGCGAAAATAAGACTttg
acggttttagggtggtaaaacggacaaataAATGACCGCGCAGCAAATGA
TTTTAGATCCTCATATTCATCATCATCGCACTATATAGCACagtacagtc
aactctctctaattcgaacctttgAATATAccttcgaatctttctgtatt
tcgaactaaaatattgctcCTCTCAGCTGGAAAGTTGTctaaaatactct
ctgtaattccgAATATTTCTCTAACTCGAAGAACAATCATAGTCCCTTgg
gatcgaattagagagagtcatcTGTGGTGTGATGTTGTAAAATGGATGAT
CTAGTTATAAGATTACTATGAGCAATATCTATTGAAATTGCTCGTGAGGT
GTCAGTCCACAAATTCTTGAATCGAATATTCAAACTTGGTTGTAGTAGTC
CAGTAGAATTTAgggtcaacctagaaaaaaattattataaaaggtttcta
tataccgttggaaagataattttattagctttcaaatgaggggtagagtc
aatttttttgtcatggggaaaaaaagttatggacCAAAGAGTGAGAGGgg
gttttctaagcaaaaagcaGTGANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAATTGACtct
acccctcatttgaaagctgataaaattatctttccaacgatatatagaaa
ccttttataataattttttctaggttgacccTATTACGGACGAATTTCTA
CTGGACTATAGGAGGAAATTTTATCGAATGGTTACGATTAGATAGTTAAA
TGTGATTGATCGATTGCGTCTAGGAAGACTTTCAATTTATTTGATTCATA
GCCAATTATGCTCGATTGATTATTGATTGTCAGTTCATTTAATTGATAGC
TAATTACCTATAGGCCTACCATTCGACAACTAACGAAGCTGgttatagat
cttatcggagtttttgatttttctaaaaaagcgatgtatTGTGAGATTTT
TTCtagagtattacaatagaaatctcttaggaattcctcgagggaattct
atagTAATACTcccaaaacaatcccacaatgcattatttttttagaaaaa
tcaaaaactccaataAGATCTATTGTTTGAGATTTATTATCGTAATGATT
CGATTTTCAGGTCCTACAAATGTTCCCGACACGGTATCTTTGCTGTCAAC
CAGAAATGCCCGTTCGTGTtctcaaaaagtttgttcaatACAAATTTGAT
ATTAGTACAGAATTATTCAAGGTAAATTTGAAATACAATAGActcttttt
aactcgaacctctataactcgaatgtctccttaactcgaacaaatttgtg
ttccccgtgcgtgttcgagttacggTGACTATTGTACatacttttaaatt
ttaagttaaaCAACTTGTGATCAAAAAATCGGAATCACACTAATAATTGT
TCCCTATTCCATCAGAGAAAGACGTCGGAACAGTGCGAGTTCATACTGTA
CATATATGTATCTACCCCTCAGTGGTCGaaataaggttttttttctGGTC
GGTTATTTTAGGGAATCTGTCATGTTCAGTGTAACGCAAATGCCCATCAT
GGTTCGGTTCAGTTTGTCATTATGGAAAAAGTTATGGATTCATAGAGTtc
aaagtaacgaagaaattagagaagaaaGTTATTTCTAAGGAACTAGTAAT
AGATGGTTAATAAATAACCGAATGTCAAGATgagtttaaagtcaatcaat
tattgGTCAGTTATTTTCACAAGTTTCGAAAATTTTCGGACCGGCGATAT
TTTTTTCTGGTCGGTTTTAACCGATAACCGACCCCTATTTCGATCACTGC
CCCTTTATGAAATGTAACcttcattttttacgatttaGTTGGAAATGTGG
AGAGGTGACGAGACGTTACTGGATGAATTAACCCTCAAACAATTAGTACA
AATTTATGGATTATATCGTGAGGTATGTAGAGATTGATTTTTTACTTAGT
GTTTAACTGAACGTGACTTCTAGTCCGGGAGCCAGATCTTTTATTTCCTT
AAATGATAACTTTTTGGTTAAGCAAAACTCCTAGAATCTTCgcaattttc
tcaaataaaatttctcatTCTGCCAATAAATGTCAAAAGCGGGTATCGTG
AAAAATTCTCTTCGTTgccaaattcaaaattgaaatcattttcattattt
GCAGTACTAGTTCtagtaatttttcttctttccactgTTCACCTTTTTAG
CGGAAACCATTAGAACTTCATTATAGCTTATTGCCCAAATTCGAAAGCAA
AACAACAGAAGAATCGAAAATCAAACCAGCTATCCCTCGTCCCCATCTCC
CTTCGTCACCAGCCTTCCAAAGAACCCCTAATGATGTAATCGAAGGAgat
aaagaaattgagaaacaaGAAGAGGATGATGGtaagtttgaagaaaaaca
tcCTACAGATTCCACAAAAACCAATATAGATACAGAATCAACCATTAATG
AACAAATTGGTGAAACCAATAACGATGAAGAGTCTTCAGGACTACCTGAA
AATCCTGTAGAGAACCCTCCTTCGGTAGATAGTAACCTAATTAAACAAGA
AGACATGGatgttgatggttctggtgaacaAGCATTGATAACATCATCAT
CAACTAAAGAACAATCTGAGAACCCTGACAGTGTCACTATGCCAGATTCT
CAAGAACAGAAACCAtccattttcaaaaacaataaaacagaATCGATGGA
TGAGAAGCTAGAATCTAGAGAATCACCAACAGATCAACAAGTTAAAGATG
AAACAGAGACTTGTGCAGTCACCGGAGCTGATAGTAGCGAAACCAATACC
TCCTATGAAAGTTGCTTGGATACTTTATCTTCCTTACCTGATACCTTCGA
TACTCCAATGGAAACTGAAGATTAATTCTTTCCTTTGTCCGTTCTTTCAA
ATACTTTATTACTTTAaagggataaatttttgcgggg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00010054TCONS_00010054Clytia hemisphaericatranscript
TCONS_00010055TCONS_00010055Clytia hemisphaericatranscript
TCONS_00010056TCONS_00010056Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00010056-proteinTCONS_00010056-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:25424..35610 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
49.63	46.11	25.88	24.06	8.1	6.72	14.41	14.54	6.76	6.74	10.2	8.24	9.05	9.54	8.72	13.03	9.58	13.2	2.78	3.17	8.57	8.54	33.44	29.75	18.9	17.82	6.47	5.89	18.67	20.14