XLOC_005956 (gene) - C. hemisphaerica

Overview
NameXLOC_005956
Unique NameXLOC_005956
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000108:366643..371128+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005956 ID=XLOC_005956|Name=XLOC_005956|organism=Clytia hemisphaerica|type=gene|length=4486bp|location=Sequence derived from alignment at sc0000108:366643..371128+ (Clytia hemisphaerica)
aaaaatttccgTTGTGCTTAGTAGCCTAGTCTAGTAAATTAATTGTAAAG
TTGAATTTTTAACGACTTAGAAAAACCCATTTATAGATAATATATTTACT
TTGTACATAAATTCATTATATACTGAATCctatttgaattgtttttgttt
ttgtttttactacttagaaaaagaaaaaattttgaatgttttactCAACC
GAAATACCTAATGATATCCGTACGCTCCCGAGTACTAGGTTTGCCAGGTC
AAGGCAGGGTGGCCACTAGTCCTGGAAAGTCCTTGAAAGTCCTGGATTTT
GTTTTAGTCCTGGAAAAGCGTCCTGGaaattcagaaaattgattaaagtc
CTGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
AATTGATTAAAGTCCTGGAAAAGTCCTGGAATATTTTTCCTTGTTAGTCC
TGGAATTTAACCTTTCTCTATAAGCGATCAAGCGTGAAGGAATTTGTATT
CTGATGAGATATTTATTGCTTTTATTTTCTGTATTCTAATATATGTGTTT
GCAGAAGTcataaatattgtcaaaatcgtCAAACATAATggcatactctc
gggtaccaatGGAAGGGGTTTGGAATTAAgcggttggaaaaaatctcaaa
atctaatCAGGGAGGTTGGAATTACAATGCCCTGGCCTGGGGGGAAAACT
TGAACTTGAactatcaaaaacattttcccaaaacttaattagcagggggt
ggggtggaataagaatgtcatgggtggaaaatttttcaaaaaattaatta
gcgaggGGTACACTTATTAAGTACCCAAGAGTAGTTTGGCTAAAAGCCAA
AAGCATTATCGTCTAAAAACTGGTTCCTATGAGACACTTATAAAACACCA
GCTTTATGAATACACccattgaagtttttcaaaatatcacgTCCTATCTT
CGAAAATATTACCTTGTTGTGTTTCAAAGAGATAATCCTATgtttctgtt
tctaaaaaagtAATATTTTCCAATTGTTGATGAAAACGATGATGCACCAC
TAAAGTTATTTAAATTGGCTTTTTGGGAGGAGATTTTGTTAAATCTTATT
AAAAATCTTATTAAAAGTTGGACTTTGTGCGTCTTAAACTGCGCCCTGAA
ATCAATGTTGgtgtaataatttttcaaatttttcatgctCGCTTTGCTCG
CATCAATaagattttggtaattttttttgaaatctagtttGCAATTTTTT
CATGACAATCTAGCAGTTTCGAATGGTAATCTAACTGTGCGCCTCATGAC
CAATTAGCTGAATGCAATTTAAAACATAacccaatttttttcgctcgaaa
AGTAATTCGAAATCCGTATTGGttactttaaaaacaaaaatacaagaGTA
ATGTACGGTTTTAACTCTCACTTTACAAAATCTTTGTCGCCTAAAAATAT
CCTCAACAAGTAAGACAATTTGTAAGATTCTTTGTAAAGCTATGTGATTG
TCTATGCAAATCTTCTTTattggcccagctagctttagcgtagtgggcct
ttcattagcattctgcccggtgtcagtATGTAACAATTTACTAGTCGATA
CGCGTTTTATTTCAAGCACAGGCTAGTAcaaattgtgaaaaatttgattg
gccgaaacaTGTCTCTTTTAGAACATGATTGGCAGAATAAAAACAATTGC
AATCGTCTTTATTGgtttaaaacataaaaggagaaaatacaattaactac
taaaactataagaatataacagatgtagtacgttttaagaaaaacaatgt
gatttacaaacgaggcccggaaaacccgagttacaaaaactcgagttaca
aaaaccctagttacaaaaacccgagttacgacgaatatgacgtcacaagt
ctcaaattatgacgtcataaggggacttcttaactcgaaaaagtttttta
ctgttgttttgaaactcgaaatatttttttcaaattttgctttagagtta
cgtaactcgaaaataaaattcaaatttcaattttcgagttacgtaactcg
aaaataaattttaaatttcatttttctagaTACGTAACTCGAAATtgtag
tacacgttttttttttattagaacacctaaaatttggctgagcgtggatg
tgcttattttttttagcaattttcagccttaaatgttcttaaatgcgttc
ttaatttttcggactactttaaatcgacaacatcatgcaaaataaaaagc
acttaaagttggtaaaatttggacaatttttgactctcgattttagaaaa
tccatccctaagtttggttaaaactgcttgaaaagaggaaaaaattgtag
tttcttgtcatattttttcaaactgaggctgggcatgttcttacgatgtt
cttaatttttcgacgaatttcagcctaaatgttcttataaactgggttct
aataaagaaaaaaacgtgtacattattTGAACTTTCGAGTTATCTCTAGG
TGAAAATAAAATACTAGAATTCACCATTTTTTTTGAGAAGAATCAATAGA
TCAGATTAGAATAGAAActtattttaaaacataaatgaTAGAACAATGTC
AAAAGATCTAATGTACAAAACAAAGCAGGCGTCataaaccccgggggggg
gcactcgatctgaaaacgaccatacgttcggcccaaaatttggcttctaa
aatcggacccttacagtgcagtgaatttccatgaaaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagtgca
gtgaatttccatgaaaaatcatacccttacagtgcactttttcaaaattt
ctcgcccgtaagggcgaaaatttttgcaattttcctagaaaatgtggaat
ttttcctccaaaattgaccaattttgttccaattttatcaaaaaattggc
cttttatcacaatttcctacccttacagtgcagttcagtgcagttttgta
atttcctacccttacagtgtactagctgaactatgaaaNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTAATCGaatcttttagattttagtcTACTTCAG
CCAACAAAACCTTCAGAAATTCCCATCAAAATAGAGGTATAtaagtttca
agaaaattacagaaaattaaATTCTTTGCTGTTCCCGTTCATCTTTATTC
CTCTTCCTCTTCCTCTTTTAGTTTTATAGATCAAAAACCCCATTCCgtaa
actaaaagaaaaatagcactttttagaatttttggccaACTTGGTTGCGC
TTTAACATAACTCGAAAAATAATGTTGTAACTTATGTGTTCGAGTTACGT
Atctcgaaaaatgaaatttaaaatttgttttagagttacgtaactcgaaa
attgaaatttgaattttattttcgagttacgtaactctaaagcaaaattt
gataaaatatttcgagttacaaaacaacagtaaaaaactttttcgagtta
agaagtccCCTTGTGACGCCATAATTTGAGACTTGTAACGTCatattcgt
cgtaactcgggtttttgtaactcgggttttccgggcctctttacaaacct
tcttctctttaggaatgtgttcttttaaaaaagttgattttacatttctc
tatcatgtgaacagttcagtgaacagttcagttgttcacgtgcTAGGAAC
AAAACAGTTCTGTAtataagattaaatattttgatttatttctcattttt
gctAATAAGAGATAGGCGAGTGGTTTAAGGCGTCTTTGGCTTGTGCTAGC
GACTTTAGGTTCAAATCCTCTCTGTTTCTtaagtcttgttcagttcatat
ttttattcgctgggcctttatgccctctgggcttcttgtcTTCTTGGTTA
AAATCAAATTGGCCCATTCTCTATTTCGTTGCTTTGGAGCAAGTTAGAAA
AAGCTTTGCACCTCATTTTGTGTTAATATTTTTCACATACATAGCTCAGT
TCCGAGAGAAAATACTTTTATTTTAGGATAAAAAGTCCtggaaaagttta
aaaacatccTGGAAAAGTCCTTGAAAAGTCCTGGAATTTGACTTGTTTTT
TTGAGTGGCCACCCTGCAAGGGTATGTCCGGGTCGA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00010629TCONS_00010629Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:366643..371128 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.12	0	0	0.78	0	0	0	0	0	1.16	0.77	0	0	0	0.35	0	0.88	0	0	0	0	0	0.6	0	0	0.79	0	0	0