XLOC_006166 (gene) - C. hemisphaerica

Overview
NameXLOC_006166
Unique NameXLOC_006166
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000119:328000..336803+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006166 ID=XLOC_006166|Name=XLOC_006166|organism=Clytia hemisphaerica|type=gene|length=8804bp|location=Sequence derived from alignment at sc0000119:328000..336803+ (Clytia hemisphaerica)
TCCTCAGTACATCGAACTTATCGGTACTATGCTACTATCGATAATTCGTT
TGCGGTTGAATTAGAACTCGACTCGCTCTTGATGTAGCGCGTGATGACCA
TCATTAGGCAAGCTCGACCAAGACTCGGCAAGGCGCCAAGATTAGGCAAA
GACCCAAGATTAGGCGGAACAGAAAAAACCAAATGAAGACATTCGCTTTG
TGGTAAGATTTTTCTCCACATCTTCCTTCTTAACATAGAAGTGTTTGTTT
GCTAAATTTCCTAGATTATTAAGGGTCGACCAATTCATTAAGTGAAAATT
ATTATATGTCCATGCCATGACCATGGCCAAAGGGAGGGGGGCTGCTGGGG
CTGAAGGgtaccgtgagatcaggtaacttgcatcagtggaggctaacatg
ggGTTGGGGTTGGGTTTAGCATTAAGCTTGAAAGTCACTTAGAGGGACAT
TTGTACCCTGAGACTTAACCGTACGGATCCTTGTATTAGTGGCACCGGTA
GGGCTGGGAGCTTTGCTAATTAAGGTCTGCAAATTACATGCTAAAAGTAT
TTATGAAAGACAACTTTCTACCGTGCCTCATTGGCGCAATCAGTTAGGCA
TAGGGTTTGTAAACgtaggttgcttgcatttggtagttcgagccggggtc
aGAGACCTATTTCACTGGTacaggcaaatttcagaaaaatacttagaaaa
cagttagaaacgcttgagaaagtcagaaagtcaggatagaagataggaaa
gtacaaAATAGGGGGAAGATAAGAGACAATGCATCCTGGAGCATGATATT
GTTTACCAACCCTAGTAATCGACCCCTTCGTGTCTGTTTATCATTTAGTT
TTGGAGGATTGGATAGAAGCccaaaaatatgcaaaatacGACATAtctct
tgatttttcaagcttggtaacctACTGGGTATCTAAATTCCAATTATATA
CCTtccaaattgaccaaaattaaTACTGAAAAAAGCTTGGTTTCaaacaa
tttgaaaacaaaTGTACAGTAGAGCATATTCGGACCGCTGGCTTATATCA
TGAGTTTTAAGACTCAGAATATGGttatattctcaacttcagttgagtta
gaatctgagaatgtgtgtgtgtctgtctgtctaggtctgtgtgtatgtcc
caaaactttggggcagcctggagactttaaaaattgtttgatttggctga
aattttgcacacttgttccttgggtgaatatctggggtgattttttcatt
ttttgaaaattttgatttttggggcctgggcNTTGGATATGTATATAACA
GCCAAAAACCATATATACCAAAAGTATTTtctattaaaatttttctttat
gtGCTTTGGAAATAGAATGCAAATGTGCAGCCTGAATCTTGGCTAAAATT
AAAGGGATTTTAAGAAGATTAATGTTAACATTTTATAAGCAGTTATAAGG
GGTATATAATTGACAAACAGACCATTTTCCATCCCTTTTTGGGTTCCTTT
ATCGGATGCTGCCCTTCAAGAATTGTGAAAAATAATGGTTAAAAAAGTCT
TTTNCTCTTTTCAGTCTCTTTTGCATATAATGCAAGATTTTTTTGCAAGT
CATTCCCCTTTTCAACTGATAGATATTCTGCCACAATTTAAACTGTTTAT
TTTAAGTCTACTAAGCAGATTTCTACTAAATTGCTACTTACCACTAATGA
CACACATTTTCCCTTTGTTTGtcattttaaaaagaaactgGCTTCATAAA
CAGTTACTGTATTCAGGAAGTTTCTCTTTCTCTCTCGTTTCTCTGATTAC
TGTAGTAGTTAATGGAATTTTCAATAACTAAATGAAGACTCACTATCCCT
AACTTCTGATCTATATCAATGTTATTTCCATTAAACatttacagtatgtg
gccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTTTAtttataatgttaattttttgttata
aactattatttcaagctgataggaatggaattccaatattttttgctgtt
tctcatatttagaattttcggtttgaaaatcaatgctgattctaaggtcc
caaaatactggttgacctttaagatgctgtatcttttacccatcctctaa
agtcacagatgtaacTGTATTTCTGAACGGctttaggtgtagaaagtttc
ctatactcCATTTTCAtaacctttttttcaatatccaaggagctagagtg
agttatatgcaatttttatctaattttggtgttaaaatatttccttcaga
caTAAATATGTTATtctgaatctgtctcaaactatcaaaaacatgctcat
ttttaagtgtAACCATCGATCATTCTTtcagaataaacaaaaatcgttta
attctgataaatctacaagtcagaatcctcattataatgacgacctccgt
tttgggggccgtctccgttttgggggccatatactgtaactGAAATGTAA
AATTCAGTACTTCCTATCACCCTAAATATTACTACCATTCCTTTTTTAAA
GCTAAATTTCTTGTCGTTCAAAGTCataagaaatttttagaatactTCAa
ttaaattaagaacaatttatttaTGTGAGAGATTGGGAACTTGCCTTCTC
TTGATAGTAGGCCCGATTGGTGTAACTATCCAGCAAATTTGAAACTAAAC
ACCAAATTTGGACCAGACATTCCTAATATTTCTAATACCACATGTATCAT
ATTAGAAGGGCTGCCCAGAAAACTTTAAAGGATAGCTTTTCGGATCCATT
CATTGAAAACCTAGGCTGGGcccaatttttatgaaaatttcaaactcatt
atATATAAGCTAAAGCCAATAGTAGAATCTGAAAGCTGTCGAAAAACATA
TAAAGACTTTTAAGTGAGCATGGCCGATCTGTGTACTATAAGTGGGTTGA
TGAAGGTTTatagattttgtttttgaaatttatattttatatttatatcT
CGCATTTTCATCGCCGAGGGGACTAGAAAATCGTATTCGATTCGGCTGAC
GGTGTATATTGCTGGAAGAGATACATGGGTTTGATTCAtcggttttcttt
ttttctatcttccAGGCTCAAGTTCGTATTCATCTGATTGAAGGCAATGT
TCACGTCAACGGTCATAGATTGGTTCACAACCAAATCCATCAAATTAAAA
TGATGGTCATAGTCAGTAAGTTATTTACTTCACCAAAGCTTTCAGACTGA
CATGGGGTAATGTTTGAAAGANGCAATTTTAgccatttattatttattat
ttattatatgaatacaaaattttgaccatagtttggaaatgtgatttaga
gggttttgggcataaatttgtttgataaaatttttacagtatacccctgg
ttgtcaaaatgcaggtttgtggcccccaaaacgtagatgtagttaaaatc
aaattattaagcccagtggtaatatgGGAAAAACTATGAGCATATTTGTG
Tttacccttaaatttacgacccgatggatgtaaaatttatgatttttatg
aaatatttcaagattttcgatattgcaaagtccaaactgaaattttagaa
attttcaaaatgacaattctgatttaacaacgtcttaatcaagtttctga
aaaccaatctcttttgaaaatagttccattcatgtatcgAATAAGctttg
gaaattttagaaaaaaagcttaactgaaactgaaaatattaagcttttaa
ggtatttttctcctatattttgcaaaaaaaatacagAATTTGCCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
gctagagtgagttatatgcaatttttatctaattttggtgttaaaatatt
tccttcagacacAAATATGTTATtctgaatctgtctcaaaccatcaaaaa
catgctcatttttaagtgtaaccatcattctttcagaataaacaaaaatc
gtttaattctgataaatctacaagtcagaatcctcattataatgacgacc
tccgttttgggggccgtctccgttttgggggccatatactgtaactGAAA
TGTAAAATTCAGTACTTCCTATCACCCTAAATATTACTACCATTCCTTTT
TTAAAGCTAAATTTCTTGTCGTTCAAAGTCataagaaatttttagaatac
tTCAattaaattaagaacaatttatttaTGTGAGAGATTGGGAACTTGCC
TTCTCTTGATAGTAGGCCCGATTGGTGTAACTATCCAGCAAATTTGAAAC
TAAACACCAAATTTGGACCAGACATTCCTAATATTTCTAATACCACATGT
ATCATATTAGAAGGGCTGCCCAGAAAACTTTAAAGGATAGCTTTTCGGAT
CCATTCATTGAAAACCTAGGCTGGGcccaatttttatgaaaatttcaaac
tcattatATATAAGCTAAAGCCAATAGTAGAATCTGAAAGCTGTCGAAAA
ACATATAAAGACTTTTAAGTGAGCATGGCCGATCTGTGTACTATAAGTGG
GTTGATGAAGGTTTatagattttgtttttgaaatttatattttatattta
tatcTCGCATTTTCATCGCCGAGGGGACTAGAAAATCGTATTCGATTCGG
CTGACGGTGTATATTGCTGGAAGAGATACATGGGTTTGATTCAtcggttt
tctttttttctatcttccAGGCTCAAGTTCGTATTCATCTGATTGAAGGC
AATGTTCACGTCAACGGTCATAGATTGGTTCACAACCAAATCCATCAAAT
TAAAATGATGGTCATAGTCAGTAAGTTATTTACTTCACCAAAGCTTTCAG
ACTGACATGGGGTAatgtttgaaagaaaatacttaaaatcacATGACATC
AAGAGGTTTGCACTGTCCCATTTTCAAAGCAATAATAGGAAAGTAAAATC
CATTAGCATTAATTTACTCTTAAACGGGTATGACTTTCCGATAGCTCGTC
GTAAATtctaattaaattaaatttaattacAACTAGTTcagtgaaatttt
tcatgatTCAATGAAAATGTATCCTTGACATTTCCAGAAAAACTGTCTCT
AATCATTAAATtgtaggaaaaatatttttccattcgTCCAGCCTTAGCGG
TGTCAAGTGAAACTAGACCTTACATGTAAATTTGGAGTATGGTTACCAGC
CAACACTTAAACTCTAAACTAAATGCATATTGTTCTCTTTTTACGATTAA
CAGTTGACATCCTCAAAGGCGTCCGTCAACCACCCAAACGTAAAGCTGTC
TCTCTCAGAATCATGGTTGAAGAAACTAACGTCAATGGTGTCCCAAGATT
GTACGTTGAAGAAGAGTTTATTCGTATCGGTGAAATGGAGGTCGAACAAA
TTGATGTTCACCAAATCATTTGGGAATCCAGCCTCCGAAAACCCATCACC
ACCGTCAAGTTggttgaaagtaaaatccataAAAAACCAAGAGTGAATGA
TCACCCAATGTTTATCAGCGGTAATAAACCTTTCGTAACAAAAAGTGATG
TAGTGATCGAACTATTTCCATATTGATGCTCTTTTGAAATTTAGTCCTGC
TACAGTTGCAATTCATGGCCTGTTAAAGATGCCAGAATCCCGTACAATAA
TGACTGGTTAGTGAGAGctttactgagaaatattgccctaGGTCAAGTAA
CGACTGAGCTTGCGAGGTtattgcgttgaccgagggcaatattttcagta
cagcccgaaaaaaccggtcattattgtatttgttaaccgtttccctcagt
ttcgattgatttttagcgctttattcAGGAAAAATCTGCGAAATAAAGCG
GAAAAACAAgtgaaaagagataaaaagctgttataatttctgacgtcaga
aattaaaaattattgttcattttcttttgaaaaagtgacgtcacaatgaa
ttttcctaacgacgggcaactctgtacagtgtaagcccgtcgtcatgcga
aaagaaccaattgcattgcgccaaaagccgtgtagcccgcttcgaaaaag
taaccgctTAACAATACAAGATAAAATACGGCTATGGCGGATTTCTTTAG
ACTTTTCACCCAATAGGACACGAAGGAGAATTCGCCGCCACCTAGTTGTT
GTTTAGTTGTTGTTTTGAGAGTTTAAAAcgttgaaaattaatttttagac
GAACAATCAAAGCCTCATTTACCAAAACATGGATTCGGATACGACGAAGA
AGAAATGTATGAGCGACGTCACCATGGAGATCACAAACACCACAAGAAAC
ATTGTCACCATCATGGAAAACATGGCCGACATCATGACCATCACCATGAC
CATCACCATGGAAACGGAACTTTCTTCGAAGAGAAAATGCACTCCGCTAA
ATGTTGGTACCGCACTCTATCGTGGAGATCGAAAGTCTTGCTCTTCTCCG
TTGGTTTCTTTGGACTTTTGTCAGTTGTCATTTGCTGTGGGTTATGCTCC
AAACGAAGAAGAGCCAGACGTGTAAGttattgttttatttcttttttcaa
agtaTTCAGTTATGGTTATTGCATAAATGTGATTGCTTTTGGGTTTAATA
ACAGATCGTCCATTCTGCGCACAACACGTTCTAATCTAAAGGGATGTGTT
CTGCGTGAAGTTATCAATGCCTACTTGGAGATAACGTATTCGTAGAAAAA
CATCTAGAAGTTACATAATTTCATGAAGTTATTGTAATGGTTCGTTTTTG
CTAAATTACAGTGCCCTTGCTTAGATCCTCACTGACGTGAATAtttactt
tcttctttttgtacaGGCTTTGTCTATCCAAGCACCAATGGATGATAGCG
TTACTGTTGATACCACAACCGAAAAACCCAAAGCCAAGACTGGCGACAAA
CACGAATTCCATTTCGAATTTGATAACGCTGTTGTCGTCAGCGACAAGAA
AGCCCTCATCTAAGAGGCTTAAATTTCTCTCTTCGCGAAAGACGTTAATG
GACCGTTGACTATGTAGGCCGCTATTTCTTATAATCTATACCGCCTGTCC
CCTCGCCTGTCCCAATCTGTTCAGAGTCTTTTTTCTGTGTGTTTTTGCTT
GCTTATCGATCAAGCATTGGTTTTATCATCTTTTGCAAACTTTCTAGCGA
CGCGTCCTTTTATGTCAACGGTTTATCTAATGTCTTATCGCAAGAGAAAT
GAAACGTAGAAAAATCTGTAcgtttcaaattcaaaatttgtttacttttt
atcttaaaattttttggttatttttattgggtaattttattgtaatattt
ttttggtcctttccAATTTATTATGATCCGAAGTGGACAATATAACAACa
aacttttttaatgtttagTACTCAAAATAACACAAGAATGAGACTCCGTA
TCTGTCAATAACCATTACGTCATTATTGTTGATACtcattttttatataa
actCTTTTCAAGCCttgaaatgatatttcatatatAATAAAGGTTCCTTT
TAGTCAGTTGTATATAGCttatttgtatttattttaagttttattcTATT
TGATGTGTTGTTTatgataattttatttttttgtactttttttccACTGT
GTTTGTATCACTGACTATATTTCACTATGTTTTATGATAATTGGATGAAA
TTTTTGCTAACAACATTTATGAGGACCTTACTGGTTACTTTTAGCACTGT
ATTCTAAACTGATTGAAAATATAATCATGGCATTAATAGTAAAACCTGTA
CGTACTACGTTTCCCTTTTTCACTCTcatgacacccctgtgtcacagacc
cgct
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00010997TCONS_00010997Clytia hemisphaericatranscript
TCONS_00010998TCONS_00010998Clytia hemisphaericatranscript
TCONS_00010999TCONS_00010999Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00010997-proteinTCONS_00010997-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:328000..336803 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
168.68	167.35	218.9	228.01	439.96	321.59	311.7	345.4	734.87	466.52	870.91	354.8	596.53	443.5	144.47	189.32	157.65	187.64	763.89	1155.95	440.36	438.89	267.24	372.94	597.74	397.51	773	953.5	109.7	97.05