XLOC_006760 (gene) - C. hemisphaerica

Overview
NameXLOC_006760
Unique NameXLOC_006760
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000136:250824..260752+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006760 ID=XLOC_006760|Name=XLOC_006760|organism=Clytia hemisphaerica|type=gene|length=9929bp|location=Sequence derived from alignment at sc0000136:250824..260752+ (Clytia hemisphaerica)
TTTTTTGAGCAAGACTAGAATCTCGTTCGGTTTTCTCGCGCCCTTGACGG
GAAATACTCACTCGGGTAGTTTTACTTTTTGCGGGAAAAACATGAGCGAG
TTTCTTTGCTGTCGAGTTCAACTGTAGCAATACACTATTCCTTTaagtac
tttttaaaaataattgaaaattttgtgcaCAACAACAACATCGAGATCAT
TTTTACCCATCTTTAGATTCTCTGCACCTGGTTTGCCTGAGTTGAATCAC
TCCCAAGTTTATGCTGTAAAAACAGTTCTTCAACGACCCTTGAGTTTGAT
TCAGGTATGCGTCATTGTTAAGCTTGTGTTAATTATTTGATCTGtatttt
ttatatcctttcagTGTTTAATTTGGAAACCATGCTTGAACTGGAGTAAA
ATTAAATGATTTAGTAAAATAAAATGCTTTATTATCTCAGACCtgagatt
tttttataataatagccgtagtctgtatgccATTTTGCCTGTCTGTCcgt
gtgttgtttttttttctcgcaaTTTTTTGTTGATAgggcctggtttagac
tttgtTCAGCCttagttttaaaattaaatCCCATTCTACATTAAGCGATT
TCGATTTCTGCCTTCAAATGCCCTCATATAAAACATAAACAatcaatttt
agtttaaatccCCTATTTTGACATCAAAGTTATTCAAATTATTGAGAGCT
GGACAGCTGAGTGAAACGAGAAAAATTTCATTGCAGAAGAACTTGTTATA
TTTATGCTATACTATTAGATCAATGCAATTATTTATATTTCAGGGTCCAC
CAGGAACAGGGAAGACTGTAACATCAGCCAGCATTGTTTACCATCTTGCA
AAACAAAACCTTGGCCAAGTTCTTGTCTGTGCACCAAGTAACATTGCTGT
TGATCAATTGACGGAAAAGATCCATAAAACTGGGTTGAAGGTAATGATTT
TCTTCATTGCTAGCTTGAAAAGCTTGTATGGTTATCCAACTCGAAAGGTT
GGCTTTCTTGTTTTTGGTATAATCTGACAATTTTGAAAGTACATAACaac
caaaaaatttatttaccaTCAGGTTGTGAGACTAGCCGCTAAAAGCAGAG
AAGCAATCGATTCACCAGTTTCTCATCTCGCATTACACAATCAAGTGCGT
AACATTGAAACCATGCCTGAGCTGCAAAAACTTCAACAGCTCAAAGATGA
TCAAGGAGAGTTATCTTCTGCAGACGAAAAACGtttcaaaacattaaaat
cttctgctgagaaagaattGTTGCAAGTAAGAAAATAAAGtctcattttc
ttgaaaattgttttggTCCCTCCAGGTAAAAAAACAAGTCTCACTCGAAT
TTTCCACAGAACATAAACATAATTTAGTTCCCTTGTAGTGCATGTTTAAG
TTACTGCACTTCATTCagctttgtttgaaaattcaacTTATATAAACTAC
ATCAACtcaataaaaatgattttaactgatttttccaatgaaataatttt
accAAATTAATGAAGATAGGTAGTTCATCTCTATTTTTTCCTTGTTAAAG
CATGCTGATGTAATCTGTACTACTTGTATCGGTGCTGGAGACCCAAGACT
TAGAATGGCAAAACTTCGATTCAGATGTGTTTTGATTGATGAATCTACAC
AAGCCACAGAGCCAGAATGTATGGTGCCAATTGTTCATGGAACTAAACAG
GTTGGTATCCTGTTTGTCTGTCATTTTTATGGATGGTTGCCAGGTGATTT
GACATTGGAAAAGCTGTGAAGGGGCAGCGatgcaaattttagaaaaattt
cctcAGTCAAATTTTGCATAGGTTTTTCTAGTTAGTTTTTTCTCTTACAT
TCAAGTAAGTTTGATAATTTTTGTGTGCGGAAATTAACGCGATTTGCTAT
TGTCTAGCCTTGTTATCACTGTCCagtctttcattttttacccATTTGAT
TTCAGCTTATTCTTGTTGGTGATCATTGTCAATTGGGCCCAGTTGTCATG
TGCAAGAAGGCTGCAAGGTAAGCATATGTCACTTTCAACCCAAATTATTT
GTTACACCCAAACCTCCCAGTCACTTCTGCTTATTTTGATACTATTAAAA
AGctattaccttattggaactaattttcacaggAACTAATAATCGcggtc
aaaaaatttttttccatgaaattgTTGTATTTTGCGAGTtcaaattttcg
cggttttgccaaaaaaaaatgctgaaattaattcccgcgaaaattagttc
caataaggtattaaTTTTGACTTATTTTAGTGCTGGTCTGTCACAATCAC
TCTTTGAGAGGCTTGTAGTACTTGGAATCCGACCGATTCGTTTGCAAGTT
CAATACCGTATGCACCCTGCCCTCAGTGAATTCCCATCCAATTTGTTTTA
CGATGGCACTCTTCAAAATGGTGTCACTGTTGGTATGTAACTACTTTTTA
AACACATAAAGAATGGTAATTAACAACTGTTGAAAGCTTTGTCTTGAGAA
ATTTAGAGCAACTCTTGAATATGAATTTANATTGAAAACTCAAGAAATTT
AGAGCAACTCTTgaatatgaatttgaaaagcctgATCATTAGACGACGAC
AATTTCATAGAATTGAATTCAGTCTGGTTCAAATCTCTGTTGATGTCATC
ATGAGCTCATCTTCAATGTTATTACTATTTTTAGGCGAAAGATCACAGAC
GGATGTAGACTTCCCGTGGCCTGTTGCAGACAAACCCATGTTCTTTTACG
CAACAACTGGACAAGAAGAAATTTCTTCATCTGGTACTTCGTATTTGAAC
AGGTAGGTTTAAAGATGCTTATgtataaggcgagaccaatttaatttgtt
gttctacgggcagatccttagcaaaatatgggtcggtcggtcggtaaaat
aaaattttcatttatcagggttggtaaagtaccgaaaatgttttccaaaa
aatatctgtttcaaaaattcactttttttatcttcgatcaGTTAGCCACA
CTGtagtcccgccaaaatgcgtatcaaagattaatgctgcgaaagcgcta
tatcgtttacttgactctcaagcaaaaaaatgcaccgcaaaacttctaaa
gggattaatgaaaaaataacccggcgctttttaatgaaattaacattttc
aaaaactttgagaaattgcctaaaatttgagccatagatgaaaaaatttg
agccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgattcagg
taactctcatccttgttgttgaaatgtatcctgtagatgactgatgttgt
tttttctgaaagctagatttcctagtgtgactaactgtcgatgaagatca
taataaaatcttagtgtatggaaattttgattttctaaatttttcaattt
cttgaattaattttcagctttattcaaatttgattcgtACAAATAAGTaa
gtagtgtgtaaaatatattgtcatggaaattaaatattattatttttttt
attttagcaaaaatagggtcggtcgggcctgtagaacaacaaattaaatt
ggtctcgcctaagaaGGCGTTGcagcaataaaaaaaattataatgttAAA
TTATACCAAATTACACAACTTATTACTGTTGTGACGAAGCCGAACTAAAA
ATCGCTCTCTTCTTCTCGACGTTGTTATACGCGACTAGGGTTCTATTTAG
GACCTCTGGTAATGATAGTAAATATACTTTTTTTCTAGAACTGAAGCTGC
CACTGTCGAAAAGATTGCTACACGTTTTTTGAGAGCTGGTATCAAACCTG
AACAGATGGGTATCATTACTCCTTATGAAGGGCAGAGAGCCTACATCGTC
TCCTACATGCAATTCAGTGGCTCCCTTCATGCCACTTTGTACCAGGTATC
TAAGATTTTCATCTACTGTTATATATAGCTGTACTGATGGTTTTAGTCCG
TCAATTGGGAACAATTTCATGCCCGTCAGAAAGGCCAATCAACGAAAGAA
ATTTTTCGCATAATATCAATATTGGAGCCAGTATATAATATATTTATCCC
AAAGTGATTTTTCTATCACTTCTTTGTTTTATCCTTAGTCCATTGAAGTT
GCCAGTGTTGATGCTTTCCAAGGTCGGGAGAAAGATTTCATCATCATGTC
GTGTGCCCGTTCAAACGAACATCAAGGCATCGGATTCTTGAAGGATCCAA
GACGTTTGAATGTCGCCTTGACCCGTTCCAAGTATGGCTTGATCATTGTT
GGTAATCCAAAGGTGTTGTCGAAACAACCACTTTGGAACCACTTGCTGAA
TGATTACAAAGAGAAGAGAGTACTTGTCGAAGGTAAGATTTTCGCATCGA
GAATACTAATACTTTATGAAGTTTGGAGGTCCCTAGCTTTAGTTATAGAG
GATATATTTCATGAAATGAATAAGATTTATTTGCTTTTCCTTGTAGGTCC
ATTGAACAATTTGAAAGAAAGTGTTATCCAGTTCAGCAAGCCAAGAAAGC
TGGTCAACCGATCCAACCCAGGCGGTCGATTCATGAGCAACACAACATTC
GATGCCCGTGAAGCTCTTATCGCGCCCGGTATGTACGCCAACCGCCCTGT
TCGCCCGCACGTCGATCCGGTCATGGATTCGTACTACCGAACTCACGATC
GTATGAATTTTTTCCCACCCGGCCCAGATCNGGTCATGGATTCGTACTAT
CGAACTCACGATCGTATGAATTTTTTCCCACCCGGCCCAGATCAAGCGAG
GAACGCATTTGCTGCTAACATCCCAATACCTGTTGGAATGTTCATGTCGC
CAATGCCGCCACCAGCTGCTTACCAATTCAACCATCAAGTGAGTGAATTA
GAGTATGAGTTGTTGGGTTTTCTACCCTCCATAGAAAAGAGAGGGTAATA
TGAGGAGTGCTAATTTCTTTACGCTTTACGTATTGAAAAGTACAACTAAA
ACTTTTAGTTAACTGTCAGCTTTTACGAGGAAACATTCTGTTTAATTCAA
TTAATGTTTGAAAAACCAAGAAATTGCTATAAATCTGATTTCCCTTTCCT
TTACAACTCTCGACATCGAAGTATTGTTAACGCCGCGTGCAAATCTTTTC
GCACCTTTTTGAATTAAGTTTAATTCGGTTAATCAATTTTTCATTCTCTT
TCTCGTGTATGATTAGATGGTTCGACCCGGTCAACACCGACAAAGGATGC
CGATGAATAACAAAGGAAATCACAACAAGGGTGGTGGTCATTACTCCAGC
AACAGACCTTCAGCTGGCAGTAATAGCAACAATGCTAATCAAGTACGCCT
GTCTTggatttctttttctctttttctgacattttttctttccctctttc
tttgaccaacgatgtaaaaataatagataaccaacttgccttgattctca
aaaaacatctgtgttacggttgtaaaaatattaatgacattttgcatcgt
gaaaagtgcaattaaataaaaacttgcttcatttgcaaccttctattgga
cagaatcgatcacgtgatgtatatttttccaaaatttgggttagaaaaag
tgtattttcctacaGGCAGCCccacagaaattttttttaattagatatta
ttgttctataaacattcatctgtttattttgtatcatacaaccttcatgc
acttttcatacgtgagatatagcatttcaaatcacacatatatttttcag
ataacagcattttatgagcgtttatttatccagatgaagattaagtggtN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTaatagagtgctcatttcaataggaaaacaatggttgt
tctcttgggagaagtgccttctagaggtagttggttatctattattttta
catcgttgcttGGACTTTCACCTTGAAAAACTTTGTACATGgttgtttga
ttttgtatcaATATATCTCACCTACACATGCCTCCAATTTTCGAGCTCTG
GACGTTCAAAGTTCTTATCAGTTTGAATCGtagaattttatatacattac
atatacttaaaatatttcaatttcttgtaagaagaaccaatatacttttg
gagatccagaaattaatgatgaaaaaagaaaagtgagTCTTCTTTTCAAA
GGTAAAGCGAATATGATAAGAAATTTTAGAAGATGAATTGTTCTCGGTGT
CAGACCCATTTTCTTGATATGATTGCAAACATTGGTTATAAACTTATTTT
ACTTCTACAGGATTTGTCTCAAGGCCCACTCTCTCAAGGTCCATTGTCAC
AAGGTCCTCCATTGACTCAAGGAGGGATGAGCCAAAACATGCCACCGCTC
TCTCAACCTTTGTCGCAACCAGAGCTCTCACAGGTAACAAAAGCAGCCGT
TTATTCTTGGTATCTTTAAGTTCCCTTAATGCTCTCTGAGTTTCCCTTCA
ATTTCAAATCgctgaatacacgttttttataagaacattcaaagtttttg
aagcctttgggaGTATTTTCGTCCATTTTCCTCAAGAATAGGatagtccc
caaagccttaaaatgttcttaacttgttcccAACATTTTGGGCATCGAAG
CTGTTATCGATGCatcgatgttcttatatagtttgttcctattaaaaacg
tgtattcgaaTCTTGAGCAAACAGAACAGTTTCAAgtataaaatgttttc
attcttCTCTCAATACAGGACAGCTACCTTGGAGACGATTTCCAATTGAA
ATCGCAAGCGGACCAAGTGTTATCACAAGATTCATCTTATCAAGGCGATC
GTGGTGGTTACCATCCCTTCTCGTCTCAAGCTGAATATTCTCAACCGATG
TACAACTCGCAGTACTGATTACAAAATGTCGCGCAGCTTACGTGGTCGTT
GGAATCCCCCCTCGAAAGAAACTCCGAACGAAAGATGAGAAATTGTAAAC
ATGGGATGATTCTTGAAAACGGGCAGATTCTGCGCCTATGATCCGCTGTA
ATGCTGCACTACATCAGAACCACGTTTCGAGTCGTTtggttattttttaa
attttatcgtTGTATTTTGGAAACTCCAAATAGCATAGAGGCCAACCGTA
AGGCGATTGTTTATTTGGTTCATTACGATTttaaattgaagaagaaaaac
tagGTCATCAAATTGTTTTTACTGTAGTATATCATATCACTATGAAAAAG
AACTTGTTAAATGAATTGTAAAAATGCCTATATTATATGAATACAATAAC
ATTACTTAAAGTGTGAGGTGATTGAAGTGTCTTGAGCTGCATCAAATCTT
CTAGCAACTCTACTTAATCGTTAGTGAATTTGATTGCTGATACTACTGAT
TTCTTAGAATGTCAAATTTCTTGAATATTCAATTACACTCCATGGTAGTT
GTACCTTCTGCCAAAGGTACCTTCGAAGGTTTGATACATAATAGCATAAT
ATatgtaatgtttttaaaatcttgTATTAATTATGATATTTAGGCTGTTT
TTCAAGTGGAATAAAAGTTTTGAATCAGCGATAAAATGATTACTCGACTC
GTTGTTTTTCATACTGTTTGCAGTCGTATAATTATCGGTGCGCTCTTTTA
AAGAAGTGCTTGCTATGAACTACCATTGATTTGATGAAAATTAACTCGAA
AATAGAAATATTGTATGAGCGAAGGCGATAGGTTTCGATTAAGAATCCTC
GACTTTTTGAACACCCTGCTAATGaagaaaaacatgttttgaCTACGACA
TTTTATAGGTGTCTTGATTCAGCAATCAGAGTACGCTGAGCTGAAACCAT
GTGCTTTTCCATGCTTTGATAATTTTCCCGCTCGTTCAATATCATAACAA
ACGGCCATCTTGAATCTCGTGACGATGACGCAATGtaattttttaaacca
atcaaaacgcttccatgaaagttttattgttctttaagccaatcaaatgc
tTTCGAGTTGGAAAAAACCGGCTCATAGTTTTTGTTCTCCTCATAACAAA
ACATTTGCTAAAAACAGCTGTTGGCAATGGAGATGACACGAGTTTGAGTT
TTATAACAATTTCAGTACATAGAAAACTTCAAACAGAAAGGAACTAAGAA
gataaatttataattttatatACATATAGATAATATTGTTTTTGGATAAT
GTGATGGCTAAACTTCGACAAGGAAGAGAAATGGGTGAGATAAGTACTGC
TGCAAATTGTTTACTTTCTATGTCCAGTAACAGAAGGCAAGAGtctgaag
atgaaaataaaaatgaagaaacccTTGAAAGAGTTGCATTGATTCTTGCT
AGTTTGAAACAGAGACATGATTCTTCCAGAGACATCATGAGAAAAGAAAC
GGATTTGCCAAATGAAAGTTGTTTTCTAACACCACCTAGAAGTAATACTT
CCTCCCCTGTCAATAATGATCTGGATGCCCCTACTGATTTCAACACAGTA
CCACCAAAAGCAATGGGAAGAAAGAGAAAATCTGCTGATCCTGATAGTCC
AAATGGGAAAAGGAAAACTCATGCTTGTCCCTATGAACAATGCTCAAAAA
TTTATGGGAAGAGTTCTCACTTGAAGGCTCACATGAGAGTTCACACAGGT
GAAAGACCATTCCAATGTACGTGGAAATCTGATAGTGATGTTGCATGCGG
TAAAAGGTTNGTGATTGAAGTGTCTTGAGCTGCATCAAATCTTCTAGCAA
CTCTACTTAATCGTTAGTGAATTTGATTGCTGATACTACTGATTTCTTAG
AATGTCAAATTTCTTGAATATTCAATTACACTCCATGGTAGTTGTACCTT
CTGCCAAAGGTACCTTCGAAGGTTTGATACATAATAGCATAATATatgta
atgtttttaaaatcttgTATTAATAATGATATTTAGGCTGTTTTTCAAGT
GGAATAAAAGTTTTGAATCAGCGATAAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00012028TCONS_00012028Clytia hemisphaericatranscript
TCONS_00012029TCONS_00012029Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00012028-proteinTCONS_00012028-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000136supercontigsc0000136:250824..260752 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
47.8	46.92	63.06	60.95	184.22	146.68	140.72	155.06	137.4	160.41	266.87	206.48	354.85	436.28	224.68	267.15	147.25	202.64	259.92	254.89	204.61	212.27	134.74	166.73	367.86	324.42	152.71	252.23	103.04	124.52