XLOC_007324 (gene) - C. hemisphaerica

Overview
NameXLOC_007324
Unique NameXLOC_007324
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000162:182020..192736+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_007324 ID=XLOC_007324|Name=XLOC_007324|organism=Clytia hemisphaerica|type=gene|length=10717bp|location=Sequence derived from alignment at sc0000162:182020..192736+ (Clytia hemisphaerica)
TAAGGGGAAACATGGACGGAAACTTTCTCATCGTAAGTAAGGTGAGATAC
ATTGTTCAGGCCTGTTCACTGAAAATATACAGTTTGGTACATCCCTACtg
ggaaaatattgaaaatcattACCGTCTTCTTAGCAACAGAATTTACAATC
TCCACTCATCTAAAACGGGTGATTTTCCACCCCCCCCTGGAGTGTGAAGC
ATCTCTAATTTGTACCCTAATAACTCTGATGGTTAAGAAATTCTCACGTG
taactgagacaggggtgttctaaaAGATGACAGTCATATACTATCATAGA
CTATTATCTCGTcatttttgagagtttgttggtGCTTAATTTCTTAAAGA
AGGACCCCCGTCCGAGAAgaactttcttttgttttcagaaaaacACTTTG
TTTTCTCACCTTACTAAGCAAGTTTCTGCCGAGCTAGCCGGCGATTCAAT
AAGGCTGGAataatatacaaactaaatcccttaacaataatcgtattatc
gtATAACGtcttactgtattacacgcattgtAAACGACTTTAGTCTAGGT
ATTTTACGGCAAGGAAAATATATTCCTTTCCTTTGATGATATTGTGTAAC
TGACATTTGAGTCAAAGAGCCTTCATCGTCCTACGTTCAGCAAACACATA
ATTTGCACTTATGATTTATGTAACAAATCCAACTTGCTGATATCATCAAT
ATCAAATACTGAAATAGTATTACCTACATCAGTTTTTGTTGTGTAGGATT
TCTAATTTCAAATATCCCTCTTTGTTCAGGGAAAACTACCTCTTGAATGG
AAACCTTCTTATCTCAACACGTTGAGATACATCGGTAACTCTTAATCATT
TCTACAATATATCAAGATAATGTGGTACACCCTTATACAgggaaaaatct
ggaaaaatttgaaaactctcTCACtgaactttcatccccataggGAATGT
AATTCTAAAAATTCCCATTGGTCTTCTCAGCAACAGGAATTACAATCTCC
ACCCATCTAAAATAGGTGATTTTCAATCGCCCTGGTATGTGTAGCATCTC
CAATTTGTACTCAATAACTCCAATGGTTAAAAGATTTCAGGGgtgtcact
gagacaggggtgttctaaCAGATGACAGTCATATACTATATTATCTCGTC
ATTTTTTAATACTCTTCTGTTAAGATTCATTTTTCAAGTAATTTTACCAA
AAAGATCACATCAGTGTTCCATCGCCTAAGCTTCGGTGCTTTCATACCGA
TAGTGCATCCTTTACCTGTTTTATTTCAGCTTTACAAACACTGATGGAAG
GGAAGAGTTTGACGTTTCACCTGGTTGACAATCACTAATACAACATCGTA
AGTAAAAGATATCTTTGCGAGTTTCAAATCTTCTTTTCTGGACAACTGAG
Tagattttgacagattttttcttggtacacgtttttaaagctttttacaa
tgccggacaaaaggttgtagacaaatgaaatttcagtgaaaaatgatgag
gaatagagcaaaatgactcttcaatgtgtctgaaaggggatggaagttaa
gaaaaacacttttgaagtcgttgcatttcgtttgaattgcttttgaggga
accacaagcaaaaaatcagcgttttgatactggtgtaagccagttaatca
agcccttgtggtttgcccttgcggNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
tttcagtgaaaaatgatgagaaatagagcaaaatgactcttcaatgtgtc
tgaaaggggatggaagttaagaaaaacacttttgaagtcgttgcattgcg
tttgaattgcttttgagggaaccacaagcaaaaaatcagcgttttgatac
tggtgtaaatCAAccgccagttaatcaagcccttgtggtcagactgcagt
gggtgactttgaaactttgaaagactttgaaagactttgaaagactttga
aagactttgaaagactttgaaagactctgaaagactttgaacagctttgg
ataggttttgaaagcacccagagcctcttgggaactcgTTTTTGAtagat
attgaagtattttgcaaatattgcagaagtctacaaaccttttgtccagc
attgtaggCTTCGATGGTCAGAGAACAAAGAACATTTAAAAGCTTGTGAA
CTCTGAAACACCCAATTTTTCCGGAACTAAGaatttttttaggcttaaaa
gttTGCATGTTCTTACAGAAGAATtgtgtgatgacgtcatcaatcttaTG
TgaggccatttaaaaaaaatccttaCGACGAAATACAATCTGAGAAAGCA
TTtttgacacccccttctcacagacccggtgggattttatcagccagtgg
gggtaaagaTAACGGatcaaaactcgatggggattgttATTGAATTCCAT
GGTTTTCGAgcaagaaaattcagtggggatggaaaaatagtacaaaatat
tttgcagtgaggatttacTTATcggttattttcagtggggacaaataTTA
GAGTTTATTATCCGACGCGcctaaatagcgacatttgattggcttctttg
ctgtccaatattttcgattattatccgacgcgcgtaactagcgacatttg
attggcttctttgctgtccaatattttcgaatatatagccTCAAtggagg
ctacatatttcaaaaattgacgtcacacatCGAGTTCAATGACAATTGAG
CATCTTCTTTTTGACGTTACGTCACAAAATAAAaataagacttttgaata
aaaaactaccaagaaaccagatttacgagcatataaattggaattatgtt
tgaaaacgagaaatattttagcgatgaacggatgataataaaccatttat
ttggacgcagtctcatccaatatgaaaaatattgggctacgagaaaagat
attggactcggcgaagcctcgtccaatatcttttctcgcacgcccaatat
ttttgcatataggattcgactttgtccaataactgcttaatatatagctt
ccatggaggctatatatttcaaaaattgacgtcacacaacgggttcaatg
acaattgagcatcttctttttgacgttacgtcacaaaataaaaatgagac
tttttaataaaaaactaccaaaaaacCAGATTAAAGagcttataaattgg
aattatgtttgaaaacgagaaatattttagcgataaacggataataaacc
atttatttggacgcagtctcatccaatatgaaaaaNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaacggataa
taaaccatttatttggacgcagtctcatccaatatgaaaaatattgggct
acgagaaaagatattggactcgGCGAAGCCTcatccaatatcttttctcg
cacgcccaatatttttgcatattggattcgactttgtccaataactgctt
aataattttccactggggacgatattgtGGCcactttttccagtgggaag
ggatcCAGTAAGTCTGGGAGAAGGTGgtgttttttgttaaaaataacTTG
CAGGGGATCGATTTTTATTGAGAAATCTCTATGGAACCCAGCGTATTCAT
CAGTTGCAAAGGGGCATTCTCCCCTCCCATTTATTTAACAAAATTATGAT
TAGCTATCTTTTACTCATCAAAAAGTCTCCCGGGCTACCAGTCAgtacat
tttgaaaaagatcgtcttggaatttttttaacattaaaaCATTATATGGA
AAGGCAAATATTTATAATGATAATAACGATTACATATACATATTATCAGC
AAATTTAATTAATGTGAAATATTTGACTGGTGGCGCACTCCAGCCTAGTC
TTTAGCATACactaccattgagtttaaagggCTAGATAGAGGCGagactc
ttggatgggaaatgaaacctcttatttcccatccagaacgcccgcgcata
gtttttacacaaacgccggattaaaactaaaatctatcgctagatttcaa
aaaatgtagttctccaaaacaaaggaaccgctagattctatgcgcgtttt
ggatggggaATAATTGGCTTCAAactctcttgcctgagaagggttaaagt
ttcgacTGCAAACATAGTAGAActaatattatcccgtaacaatttcGTAT
TATCATAAAACACCTAtgttactgtattacacgcattaaaCGACTTCAGC
CTAAAGACATACTACTAATGTCGCAATATTGACTTTTAACGGGCTTTTAA
CAAGCTTAGGTGGTTATTTAAAGTTTGTGTTTTTTGAAGTGTAATTTTAC
ATGACGACCTTATCCTGTTGCGAAGTCAAGTTATTGTTTGTTTTCTCTTC
CAAAGTTTCACtagtgaaaaattttcaacttatAGCGCAAGGTTCATAAT
AATGTATTTGACTTTACATAGTATCGAACATTTACTTTCAATGTTTATAA
TCGAGGATTTCGAGCTAGAGTAAAAGTTTTGAATGATATAAATATCAAGT
CGACTGATTAGAATTTAGTTTTCAACGGCATCTCAATCTTCACGCGAAAA
AAATAGAATGAACAATAACGAAAATCGACAACCTCTTATCCAAGATAAAG
ATGTTAAATCCAATCCACCATATTATGAATCTCAAAGACTTATTCAAAAC
GAAAAGCTCACTCATGGTACATTTGAACACCAGATTAAGGATGAGAAGAA
GGAGACAAATCAACCACCAGCATTGATGGTTTACAAATCAAGATGGTTGA
TGCTTCTCATATTCTGCTTAATCACAATGTTGAACGGTTCAATGTTCATG
GGATTGAGTTCAGTAGTGGACACAGTAGCACCTTACTATGGAGTCAGTCA
AGTTGACATCGAATGGCTTTCCAACATGTTTATGGTGGTTTATGTGTTAG
TGGCAATGCCGTCAGCTTACTGTATGTCCAAGTATGGAGTCAGGACCATA
CTGACGGTAGCAGCTGGATGCGGAGCAGCGGCCGCCTCGCTACAGTATGG
AGGTTACCGGAGAAAGAGCTACGTTTTTATTGTAGTAGGACAGTTCTTTG
CTGCAGTTGCTTACAGTAATATTTTACAAGTTCCTGGAAAGTTGTCAGCT
GTTTGGTTTGCTCCTAAAGAACGAGGACTTTCCACTTCCATTGGTGTGTT
CATGAATATTCTTGGTGTGGCTTCAGGCTTCGTCCAACCTACCCAAATGA
TCCCCAGTACCAACGACTTCACGAAAGTAGAATCTGGGTTAAGGATGTTT
TTCCTTTCCAAAATGATCTTGGCTGTATTTGTGTTTGCTCTAACTGCGTT
TGCTTTCCGCGAGCAGCCGCCAACTCCTCCTTCTCATTCACAAATTGACG
GAGTTGAAGAGCCTGGTTTCAAGGATAGTTTGAAGATGCTTTTCATAGAC
AAAGACTTCTTATTGATGGCACAAGCTTACGGAATTTATTACGGTTTATA
CGTTGGTGTTTCTGTAGCAGTCTCACCCTTAGTTCTTTGGAATTTCGAAC
ACGTTCAAAAGGATGTGAACGAGCTGATTGGATGGATGGGTTTCTCTTGT
AACTTGGCAGCTATCATCAGCTGTTATTTGATTGGCTCATTCCTCGACCG
AACTTCCAGATATAAAGCAGTTGCTTTATTCTTAAATGCTGGCGCAGCAC
TAATGTGGACAATTTTTGCATTGTTGTTGACCAAAACAAACTCTTTTGAA
GGTGTTTTTGCAGCGTATGTCGTTTTCGGGATTTTCGGTATCCCGTATTT
TGCTTCGGGTGTGGAGCAAGCAGCGGAAATGACGTCACCCGTACCGGAAG
GGACCTCGAGTACCGTTATTCTTCTACTTGGTAATATTTACGGATTTGCC
CTCATATACGGGTTTGGGTATTTAACTCAACAAGGGTACTACTTGGTTAC
TGTATATCTCATCCTTGGGTTGTATGTTCTGTCAACCTTTTTCCTGGTTG
TCGCAAAGACTGAATTGAAACGAAGTAAAGCGGAGAACTCTTTGTGGAAA
GATGAAAAGGAGCAGCAGAAGTCATATGTTAATTCTGCAAATCCAGATGA
AAATTCGTTTACCCCGCAGCATGACGGACACCATCAACAAGCTTagaata
aaatataattttgaaaataaaatttatcgaaattttaagatatttataAT
TTGTTAAATAATAATCAATCAACATCAACGAATATATAAAGGTCGTAGTA
AAAACGAGCCTGAAGATCACAGTTGaacaaatcattttctttttaatggt
tAGACCCCAAAGAAATCGTAAGGCCCTCACagttctattttaaagctaat
ttatgATAGTggccaataaaatctgaaaattgactttctcaaaacattgc
ataccaaaatgtcacaaatttaatggagatttagaaacattagtACCATA
CGTCAAAAATGAAGTCAATGAAGAGCAAGGGGTCAATGTACCAATGGTCC
AATTGtaacattagtaactttgcagtgaatcattgttcaaaatttgagaa
caaAAGGTAAGCGGTAAATAGATAAAAGGACATTTTTTCAATTCCTCGTG
AAAAACATCTTGTCAGCCTCAAATTCAACCTAAATTTTCAGATAGAGGGT
ACCTCTATTTTTTTGGGGGGTTTAAAGGGCATCCACTGGTATACCATTTA
TAACAGGAGATCTTCCATTTACATCGGCCCTGAATTTTCCTACTATTGTA
GCACcgtagattttgaaaaaattgatccCTGAATGTCAAACCTCCTCAAC
AATCGCCTCACATACTCCAATTTGATGAGCCAAGTTACTTTAGACACCCC
TATCTCATTGACGCAGTAGTATTGAGACTTGAGCTATGTTGCATGTTTAC
TTGAAGCTTTTAGACTACCTCACATACCCAATCACAGTCAGATGAGCCAA
TCATAGTCAGATGAGCCAATCATAGTCAGATGAGCCAATCATAGTCAGAT
GAGCCAATCACAGTCAGATGAGCCAATCACAATCACATACCCAATCACAG
TCAAGTTANTCATAGTCAGATGAGCCAATCACAATCACATACCCAATCAC
AGTCAGATGAGCCAAGTTTCATTTAGattaaacaatcaaaatgagaCTGG
TTACTTTCAAACTCaaagcgaccgtagtacagtggtagagcatccggcta
cggttcgcaaggttgtgggttcaacctccagccgggtcatactaaagttt
cccaaaatggtacttgatgcctctctgcttgatgctcagcaactaagaga
aggatcaagggtaagtggagaaatccagggagaaagagtggcgccctccc
ctaccttcgggtagatagctatcgaaagaggagccttcgggtcgcctccg
actgcggtcacagacttacttacttactttcaAACTATCCCTGTTTCACA
GTCCAATTCTGGTTGACTGACTATGTTACTTTAAGAAAGTCTGAAAGTAA
CTTAGATAATTTTAACTGGGTCTGCGCAGACAGCCATAGTCTAAAAAAGA
CAtaagttattacttttttttggaatacccttcttcttgttcttccTTCT
TCTTCAGATTCCAAGAATCGATCAGCAAGGTCAAGTCCCTGGAAAATGAG
TCATCTTTGTGAAGTTTGACCTGAActaccaacaaaaacaaattggTCTG
TGTCACTTTTCCACTTTTAATTAAAAGCCATTAAAATGATGTGTCCTTTT
GATCATTGGAAAATCATCTCGACCCCCTGTGTGCGCATGATCagtaaatg
aagaagaaaaaacatcatccagaattttcttcttcttttttcttcgtacg
ataaatatttataaattttcatgttttcttttattACGAATCGATCTTAG
GAACCACAagagaataaatattttaatgaattttatgAATGACTATTGTT
AACAGTTATGacaagtcaaaagaaaaaaatgtttgtttacaaattcaaaa
gggaAAATCTCACACACATTTCACCCTTGTGTGATATTCTAAAACCCAAA
GCACTTCTCAATTTTCCGTTTATCTTACAGAccaccaaaatattttcagt
caTCAATTAAGTGTAGAGAAAATGTATCGCGACAAAGAGCACTTAGAGAT
TTTACTGTGAATTAAAGCATCAGACAAACGCGGGTTAATAAGCAGTAAAC
ATGGAGTAGTCGGTCTACATTACTGGGCTGAACAGGGTTGACTGCACATT
TGAAATAATACAACATTGTTcattttgaaagattgttttttatGATCGTT
TGAGGGTTGGACCACCTAATGGGTGTAGATGAGTACAGACGACTAGTTTT
AGGATATGATATacttgatgacgtcactatCACGTGACAATTGACCATAC
ATCTGACAAGTCTATAAAAAAGGCGCGAAACTTGTTCACACATTGATATT
AAAAACCAAACGTCTTACGCAAAAACTGACAGCAAAGACATACAATATCA
ACGCTTGTTGACAACTTTTGTTACATTGCAAACGAAAAGAAGCTTTTGAC
TATGGAGCTGATGAATTTATTGATATTTATTACTCTTCCATTTTTGCACA
ATGCCCAAGGACGGCCGAGCAAGAAAGGTAGGCTCGTGCGAAATGTAGCG
ATCAACCATTTAGAAAAACGTGTGAAATTTTAAGATCATCGAATCTTGTG
GATCCTTGCCAAATCGGAACTAATGACATCATGATGATGGCAATCGACTT
GGATAAGATTACTAAGGATTTGGTTTGAATTTAGATCGAATTTAATTGAC
GGTCCCTAGTTGCCACTTACTTGGATCAAAAGCGAAACGCATTTCAAAGA
GGACTTTNGTCTTATTTAGGTGACAAcccttttttttctaatttaagcGT
AACATTTGCATTTTATGACAACACAGTGATTTCACACCAACAATCTTCGC
TACAtcgatttattttttgatacgACTACATTGCCATTTTTAGGGccagt
tttttttctaaaatttttgagtctggatacccggCAAATGTTATCGTAAA
ACGGTAATGGTTTTTTCGCTAAACCTTGGTAATAAGTTTTCGGGGAAACA
CCTGTGACTTTAAGTTTATTTCGACAAATCCANTTTCCTTTTTCAGGTAC
AATTATCGTTCTCAACCCAAACAAGCCAACACGAGGCTACACTGAGCCAT
CGGAAGGGAGCTGTTGCGAATTAGGCCATCGTATCGCAGACTTAGGATAC
AAACAATGCACCAATCAAAGACATAGTNTCAACTCAACAATGTATCTGAC
TGTACCATATAATTTTAtttggaaatatgctaatttaattcaaattttaa
ttttgtttttgagtttcGCAATCCTCCCTTTTAATTTGGTTTATGTAAAA
CCATTTCTGCAAATGCggaaaatctattttgaaaatctattttgaatCCA
GTNGCCATCGGAAGGGAGCTGTTGCGAATTAGGCCATCGTATCGCAGACT
TAGGATACAAACAATGCACCAATCAAAGACATAGTATCTCGACACTTGAC
GACTTGTATTCACCAGGATTGGCTCCAGCACGACTAGtcgaaaagtgtca
atatttatATTATGATGATTTATCAGTTTGTTGTGTTGAGACTCGCACaa
ggaaagaaaaagaattcaaaaaccTCGTTTCCAAAACACGCCAAACGATC
ATGAGACTGAAAAAAACACTTGAAAAGTTTTGAGCAATGGGACTTGACTG
CAACTTGACTGCGAATAGCATTTCATGAAGTGACAGAAAGACTGGCCGAT
TGAGAGCCTAATTAGTTCTCCTGGAGACAAGAATAACAAAACACCAAACG
CTCTTAATCTTGTGGATTAATCTTGTAAGACAGGGTCGAGGCTAGCCTGG
ATTCCCAGCTTTAAGCCATTTTCattatttgagtatttttgcTTTTTACC
ACCTGGTCTACTTAGATATTTGTAAACCCAAGGTTGACAGTGCGCAATCG
GTGAGTCGATAAAATGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00013082TCONS_00013082Clytia hemisphaericatranscript
TCONS_00013083TCONS_00013083Clytia hemisphaericatranscript
TCONS_00013084TCONS_00013084Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00013084-proteinTCONS_00013084-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:182020..192736 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.36	64.47	29.94	28.2	54.58	37.69	52.31	55.41	48.78	46.75	69.48	33.98	24.21	18.58	31.58	41.66	37.11	43.37	40.53	46.15	29.95	36.12	36.06	40.22	8.55	6.77	25.01	18.65	37.44	28.09