XLOC_009835 (gene) - C. hemisphaerica

Overview
NameXLOC_009835
Unique NameXLOC_009835
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000271:55981..62898+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009835 ID=XLOC_009835|Name=XLOC_009835|organism=Clytia hemisphaerica|type=gene|length=6918bp|location=Sequence derived from alignment at sc0000271:55981..62898+ (Clytia hemisphaerica)
AACATTCTATACCAAAGTGAATAGAACTTGTGATTGTGAAACGAGATAAG
CAAGTGTGCTTTGTTCGTGTTGAGGAGCTTTCAGTGATGTAAAACGTCGT
ATTGCCTTTAGTatgaaaatttgattgatttcTCTGGCATGTTTCTACGG
ATTTCAACATGTATTTGCAACAAGGTAAAATTTCaacatagctgtcaact
ctcccgcattgCGCGGGAGACTCCCGCATTTCTCGACGCGCGTTTAAACC
CTTTATCTAAATCGGAATATTACGGAATTATTTGAAAAGTCATTGTCTAA
ATTCGCCCGATTTTTCGATCCCGATTTCCCAATAATAATATCCTGATTTC
GTGAATTAGAAAGAATCGAATATCGCATTTTTATTCCTAATTTCCCGATT
CCCTGATTTTTTTCCTGACTGTTTTTTGAATCTGTTTCTACCGCATTCTA
AAATTCTTTGGCTGACTTTTATCTCTTTTACATCGTACACCATTCATAAT
TACTTTCATCATTTGGAGTCTTACAAAGTGGCCAACCTTCCTTACATGTT
TTGCACtgagaaattttcatttccaattttttgtgaaatttatcACCCAA
ATAGTCGCCGTCATGTTTTTCTGCgttttgcctttttttcttAGCATGAT
TACGTTCACGCTGCTGAGcttttattttctctttatttttctcataatat
tatttttgcttttgtttttgcACTTCTTTTGTCTTAGCTAAATATTcctg
atgtttttcttttcgcaaGTCCTTTGTTTTAACCAAATATTCTTTTCGCT
TTTGTTTTTGCACTTCTTTTGTCTTAGCTAAATATTcctgatgtttttct
tttcgcaaGTCCTTTGTTTTAACCAAATATTCTTTTCGCTTTTCTTTTTG
CAAGTTCTTTGTTTTAACTAAATAATCTTTTcgctcatttttatttttct
tgtaatattcttttttcttttcttttcgacATCTTTTGTCTTAGCTAAAT
ATTCCTTACGcttgtcttttgttttttcGTAATAATTCTtcttatcttca
tttttttccctCTTTATAAATTTGCTTCTTAATGAATAGTCCTTTAAATC
ACCTTTATCCATCTTTCTTTTTCTCAAAGTTCTAGCTATCTCAAAATGTA
CAAGATTTGTTTGATCTGATATGATTTCTTTTACATAAATGCAAAAAAAC
CATCCACCCGTTTGAATCTCATAAAGTTGATGCAAGCTTTCATAGCGAAA
AGTTGTTTCATTTAAATCATCAATATAGATCCATTCGTTATTATCTAATA
CAGCACATGAAAAGTGGTTTCCTTTATGTCTAACAAGACCTCTCAAGGCA
TAGTTTTGATCATTTAAGACCAAATTCTTATCATATTTTATCTCATTATC
ACCTCCAAATTCTACAAGGTAGATTTTAGGAGTAACAAATGACACTAATG
CTGTATCTCtagaaatattttcacacctgcACATTATTGATTTATCAATC
GTAATTGGGCTTAAAAGGTTTTGCCATTTATTAAAGTCATCTAAAAGACG
CAAGTTTAATTCTGAAACGTAATTTAAAAATGTACTACATTGACGTACCA
ATTCTTCACCACAGTTAGAGCATGATCCCTCTAATCTGTAACGTGTCTCA
AATAAATCTTTCTCCTGGACTGAAAGATTACAAACAGTCTGTcctgaaaa
aatttgagaaaactctGCATTGGCATCACGATTTTCAAAAGATGTACAGT
TTGTAATTAAGAAATCCCAAACAGGTTGGCGAATGACAGATaaattttcc
tcattttctCTATCGTCTGTAATGTCTGAATTTAAAATGATACTGTAAGA
CCTCAAAGAATCTGTtaacaaatcaaaaaataagCTCTGTGTCTCAATTT
TGGCAACATAAGAGCCAAACGTAGAATATGCTACTTCCAAAAACGAATCT
ACTGCACACGTATACACTGATTCTTGCCGTCTACATGAATTCATAAAATG
TAGGTCTCTATTACCTCTATTATTATTGTACATGTAATCATTCTGATCTA
TGTGTCCTTCTACTAAACCTTCGACTATATTTTTCTGAGAAATTCCTTCA
TAAGAAGGCTGATCAATATTTTCCTGAGAATTTCCTTCATAAGAAGGCTG
AAcattatgaatatttttttggcgagcaagtccgctacgtgaagcaacaa
aagccccttcGGGGCAAAAAGACTCATTTTTATAGACTCAGGTTATTATT
TATCCAAGTgaatcttcaatcttaaaacatttttactGTGAAAAAATGTT
CATGAAATATACTCACTTATCATTTTTGCTGAATGAATCAGTGATCAACT
TTGGGTTGTATTTTTTTATACGATCCAGTAGTACCTCAGGGGGGTGTCCA
AATGCGATGAAGAAATCctaagatacacgtttttttttattagaacacct
aaaatttggctgagcctggatgtgcttattttttttagcaattttcagcc
taaaatgtttttaaatgcgttcttaatttttcagactactctaaatcgac
aatatgataaaaaataaagagcacttaaaatgagcactaaatttggcaaa
atttggacaatatttgactctcgatttttgaagatccacccctaaattcg
gttaaaactgcttaaaaagaggaaaaaattgtagtttcttgtcttttttt
ccaaactgaggccggttagtgtaaaacacaggtcacgggtcacaggtcac
gggtcacaggtcacaggtcatacaaattacagaccggaaaactgtaacgc
actcgtaacataaAACTCATAGCATAagctcctgaaaatattatatgtaa
tgtAAATGtgatatcaaaatatgttatttaaaagacttaaaaatgacaaa
tcatcaaccctaaatattgacaacaaatgacacttaaattatgtaaataa
tgatgttatctcaaagtatgaggttttgtacaccaattaacatcaaaata
tttttcatgcataataggatgctgacgctgcaaatggatatagattgaca
ggttttgaaaacaataaatactccgagagagctgttttagagagatgaaa
attgtgacgtcattttatcaaaaatacaaagcaagggataaaaatattga
aacatttataaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttccaaactgag
gctgcgcatgttcttaagatgttcttaatttttcgacgaatttcagccta
tatgttcttataaactgggttctaataaaaaaaaacgtgtatatgaaTTT
GGTATAAAACTCTTCAGTCATTGCCTTTCCATTCTTGCCTAAGACCCATC
GAAATATTTAAGTTTTAATGAATTTGgtgttttcattatattttcacACA
ATAAAAATACTGATCCAATTTTCTTTCCCAGTAACAGATGTCGAATCAAA
CAGCTATTCAGTGGATAATTTGGACAAATTCAAACGGACAGATCACCGAG
CAAAAACAAGATGTTTTGTGCTTTTCGCTCTCTTGTTTACCATTTATCAA
ATCTCGTGTTTTTCGAATGGCTGGTTGATCAATGGAGATGAATATTTGGG
TTTGTGGCAACTTTGTTCAGAAAGTGTTGGATGTTTGTGGATGGAACAAA
GCCCTTCCTACGATGGTATGTACTTAGTAAAATTAAGTTTTCactctaaa
aaaatattctatcTACTATACATTGCTATCGATCGATAGCGTCATTTTTT
TCAGTAGAATACATACatgttgattattttttcatgaaaagggcttgaga
ttaaatttttttatttttttcaaaaaccaaaGGAATATAgccaagtttta
tttttctgtcAATAAAACTCTAATAATATAATTTCATTAAAGCcacacac
ccccttctcgcagacccagtaggatttttcagccagcgggaataaaaata
acggactgaaactcgatggagattgctattctcatattttttatgaatgg
agatttcaattcctttttttcaagtcagaaaattcagtttgGATGGGAAA
Aagggtaaatattttgcagtgaggattggtttatttgattgttttcagtg
gggacaaaaatttgaggataattttccaccggggacgatttttggccaat
ttttccagtgggaagggttccaaGTGGGTCTGTGATAAGAGGGTGTATTA
GCCAATAGAACAGCTTGGTTTAAGTATTCTTCTTGTCTTTCTCATTTATA
GTTCCCTTCTTGGATTGGTTTTCAACGGTTCGCGCTTTCCTTCTTCTAAC
GTCAATTTTCACCATATTCGCGATGGCTTTTCAAATCGCAAATATTTATT
GTGATCAGACCATCTCGATGTTCCCTGTTCGTGTTTGCGCTATTTTCAAT
GGTAAGTTATTCATGTTTccataaaagaatattttttcttgattgtATGC
CTTTAttgatcttttaaaaaaacacattttaagcaaaattttatATGATA
TAACTCTATTCGATATTTGTATTAAATACCGTGAGAGTATCGCAGTTTTC
CTGGACTTGTGCGAATATTAGAGAAATGAGTTTATTAAGAAAAAAATCCT
TTAATTAACCCCCAAGAGGCGTAAAAATCTGTATGACGTTTAGGCCTTCA
TCCAAGAGGGATCCAAAATTCTTGATGAATATACTATGGTTACCTTTTGT
CTCTGGTTGCGCTCTaaatacattaaaggaagaaagtttggcggatttgg
cagaTTTGGTCAAAATCTCTCATATAATTTTTTTCGTCATCCACAAAATT
AAATTCGCGCTAAATTTAAGTTGCtctatttattcccccaaatgtgtact
atttcaggctttaaaacaggtttttccttTCTTGATGgcattttttggac
aaaaaaccCCTTTGcgtccaccaaattaaattcccgccaaatttaatttt
tcaagttaaccgccaaatggaattccctctgaaaaaactttttcgaatgc
atccaccaaattaaattcccgccaaaattccTTTAATGTAGAATCACGAT
CTGTCATTACAGTGTATATACATACTCTAATCaatgtgatactcacggta
tgGATAGNccgccaaattaaattttcaccaaaatttcttcctttaatgta
gaATCGCGATCTGTCATTACAGTGTATATTCATACTCTAGTCaatgtgat
actcacggtaaggATAAAAGGGTATTTGAAACaagttttacaaaaacaaa
tattttcattacaGTGTTATACCTCTTATTGAGTATTATCATCTTTCCAA
CGCACAAACCCAACAACTTTGATGACATCTGGCAACTGGGATGGTCCTAT
TACGTCACTTGTGTTGCTTGCTTACTCAGCATACTTCAAGCTACTATCAC
TTTCCGTGTAGGCAGGGAAAACAGGCCTAAAAAAATCTCACCACCGGGAA
TCTCCGGACCACCGATCGGCCGAATCCAAATTAACGACCCGACGTCGGCG
GAAGGGGCCGTTGCACGTGACGATTGGACACTCGACGacaaaagtttctt
caataCAACAGAAGCTGATCCCTTACCTGAGAAGAAGTCTCCCAGCTCCT
TATCGAGTTATAGTGGTGACAATAGTGGCTCTTCGAGTGGGCGTAGCAGT
CGTTCGAGTAGCGTGACAAGCGGGAGTAGCTTTGTAAGTAGTGCTTCGAG
TTACTCGAGTGACTCAGAAAGTATTGGCAAAGAAAGTGATGATCGAATCG
ATTTGGTGTGAGTGATGACAATGGACAATTCTTAAACTTTAGTAATTAAT
GAAAGAAAGCGAGTTAGTTTCGACTCACTTATATTTTTCTAGATTGAAAT
AAAGATGGGATCgaggaagaaaaaaaaggaCTTTTCATCATCGATGACTA
TACCTGTAGAAtattttttacagattttactTTAAACATATTTAGAATCC
TTTAGAAGTCGTATGAtggttaaactttttcattgcCAGTGAAACATTCT
TATTGCCACCCTTTATAACGATAAGATAAAGTCATATCAACTTGTAAGAC
GGTTAGCCTCAAGGACATTGCGTGTTGTTTACGCATTTTTACGcagtaat
gaaaatatttttcctggTATGCCCCGAATAAAACAGTGGAAAGATCTTGG
AAATGCGCCAGGAATGTTTCCAGAGAAATTTGAAAGTCTAGCTATCCTAC
GGTAGCTTGGCACAGTAACTGTAATATTGAAATATTAGAAGACTAATAAC
CTtttctcgggtgcctaataaatgATATGTATTTTTATAAAGTTAAAGTA
TCTAGAGTATTCATTACTAAAGTTTATTTGGTCGTTATGTTCTATTTCAT
TCCCGGGGTGGGGGTAATAGGTTTTCGAGATGACGGGTACATATACCGCC
TGACTTTTGGCGGTGGGGCTTTTTGAGGGACTAAAACTAACCCTTAAAGG
GACTGAAATAGAGGAAAAACCAGAATTGTCAAAGATTATATATGACCCTT
ATTGGGAGTATTTTGGTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00017585TCONS_00017585Clytia hemisphaericatranscript
TCONS_00017586TCONS_00017586Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00017585-proteinTCONS_00017585-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:55981..62898 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04	0.99	0.23	0.32	0.24	0.17	0.17	0.56	0.19	0.32	0.74	0.07	6.77	6.47	0.01	0	34.9	37.09	0.09	0.02	30.12	29.69	6.72	7.46	14.33	8.67	0	0.1	0.02	0.1