XLOC_009880 (gene) - C. hemisphaerica

Overview
NameXLOC_009880
Unique NameXLOC_009880
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000273:63955..67886+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009880 ID=XLOC_009880|Name=XLOC_009880|organism=Clytia hemisphaerica|type=gene|length=3932bp|location=Sequence derived from alignment at sc0000273:63955..67886+ (Clytia hemisphaerica)
TGGGATCTACAACACAAACGATCATTGGAATCTATTGGtaagaatgaaat
ttttcattctATGGTGATGAAATGCTTGAGTTTACAAATGCTAACAATTT
GTTTccaataaaaaaatgattttgattttcgatttttgataatgaaatgt
ttttgaaaatctctATCTTTCTTTATCTTTGTAGCTTATATTTCCAAAAC
AAAAGCAACTTTGGTTGGCTAACCCACTTGGTGAAGGAACAATTGAACAA
CAAAATATTGTCAGGACATGGGAGTaggttttgtttataaatattaGACA
GTTTCTCAGTTAGTATTTTATGGTATGTGGTATTTAACAAGCTGTTCTGT
CTTTCGTAAGAGACTTTCTCTGATTATTGCCTACCTAAAAATGTTAAACA
TGCCTTTTTTCCTGTAAATATCATTTGCAAGTTCACTATCTTGTTACATT
GTTTATAGGCCTCAAAATGGAGAACGTGTTGACCATGAGAGTTGAGTTAT
GTTAACTTAGTCTGTTTCATTCTAAGAGAGATGGTGTATTCACTGAGCTT
TATAAAAATCCGTGCTGAAAATTTGTACCCAGCAAGCAAGTACTACTAAG
CACAAGAGNCcatattcttttttaattgtcaagaggaaaggcaaacttaa
accTTGGCGCATTAGCTCTTTAGAATTTGTACAGTAGttctcaagttata
agcttttgaagtcaaaattttttgaaaaagtccaaaaacacgtcacaaaa
ggggtatcaaatgaagcattttttaaaactgttcactaattttttttaga
tgcctcaaattattgattttctatttttcactgccttatcggggaaaact
tcgtcggggaaaagtgacgaaattttggataaatgacgaatattttcccc
gacgaagttttccctgaATTTTTCcggacgaagttttccccgataaggta
taactttttttaggataattgataaaaatcaGCTGAGATCATTAATTGAG
TCGTGAATAGTGAAAATGTGAGGCTTTCTGCATAGAATTGCGTTAAGTCT
GTTCTTAAAATGATAGTCCGCACATTTTGACTCCTTGCTCTGAGAAGAGA
CAAGATTTATCAAAAAGGAATACCTCGCCGGAAANTTGAAAATTTGTACC
CAGCAAGCAAGTACTACTAAGCACAAGAGCGTTTGGAGattgaaattttc
taattttttcctaGTGAGTAATAAAGAATGACTTTTTTTTAGATCGATAA
TGGCTTTGAACTTTAAAGAATCCACTCCTTGGACAATATATTCGCAGCAA
CATGCAATTCAAGAGGATGCTGTCTCGTGTGGTGTTTTCTGTCTGAAGGT
AATTGCTTGAGTGTTTGCATTTTTGTGCAAAGCCACCTAGCCAGCTCGAC
CTGGTTAAGCAAACGTCCATTTGTcgctttgaaatttttcttttgaaaaa
ttgaaagatggAAAAGAATAAAATTAAGATTCTTCGTTTAAATTATTCTC
CTTATTCtattgttattctgaaaatatctttccaacggtgtataactttc
TAGCATAGCATAAATGGGTCCcgagaaaatgctcaaaaaactaaattgtc
cacatacttttgagacagacttttttTCAATACACCACCTTTCTTGCTTG
AGTCCTCATAGGGACTTTCTTCATGATAATCTCGAAAGggcggggggtac
tagggttggcggttgaggggtatgtgcggacgagACCTCCAAAAACCAAA
CCTTAGAGTCCAAATTTTAGAGAAGAAGTCACCCTTAGATAGAATTTTAC
TATTTACtctcgaaattaaaaaaaaatccaaaaaatgttgaatttcCCAA
CCCTTGCaggaattgatttgaaattttctgatttttgtaacccttagaga
ggtCAGcgcatacccagcacccatttttgcctaagtacccccactCCGTG
ATGTTAATTTATCTTTCCAGTTTTTAGAATCATTCCTCCAGAGTAGGACA
TTACCGTCAAATTTTGAGTTAAAAGACGTATTTGCGTACCGTCAAAGAAT
TGGGTCGCAACTTCTCCGCAGTGGAGGTATGATTTTAGGCTCTTTTTTTC
CAAACAGTACTTCTATCCACCATTTTCAAGCTAACTTATATTCACACACA
GAGTTTTATTAAAACTCTGAAGGGTCTTTTAACCGTTTTTTTTATCGGGT
ACACTGACATTACATGATATGGGTCAGCTCGTCCACTAACACAAAAATGT
TTTAGAGGGAAGGTGTTATGTTTTTTCATTActgttgttttgatgtttct
tacCTAGTTTGTTCGGTTGATTCTAATAGGTTATGGAACTTGGACCAAAC
GGATATGTAGGATTTGTGGTAGAAATGATCCACCAAGATGTAATTTTTCA
AGTGTTCCCAAACGTACGAAATGGGTATGTTTATAACTTTTCACATTTCT
GTAACAGCTCGAACATCCATTATCCACGATATTCTTCATtgttcaaaaaa
atgtcagataTCTTTTAAAGCTCTTACCGGTGCCTCCTTTCGCAAGGGAG
GTCGAAGTCAAAAAATATCTCTTAGATCGATTCATCTATCAGTTTGAAAT
TCCAGCTCATACCAAATGGTATGGGTGTTATAACTCCTTTTTAAAATACA
CTGTCATGTATGATTTAAATCTTCTAGATAAGATATCTAAGgtgaatatt
tttaaacaatcaCTTTCAGATTGAATGTGAAAACTGCAAGCCAAAAAGAT
GGTTCCACCTCTTATGCCTTGGATCGGACGAATCATCCAAGGATATGTCC
TTCGATTGTGATAAGGTGATTTATGTCATTTAAAATTTGAAGCTCTACCT
AGATGTTTGTGAACCTCGAGCTCGAATCGGGAAATTTTTCGCGTCGTGCA
ATAATTGAGTTAAACCAGAAACATCANGTGAACCTCGAGCTCGAATCGGG
ATTTTTTTCGCGTCGTGTGATATTTGTGTTAATCCAGAAACATCACACTA
GCGTAGATTAAAGGGCGGAAAATTTGTGTagcagatttttatgatgacat
ttatttctttttacattatgaatagataattaccatctttatataaatca
aaaagaaatcgtGCTATTTTTATTGTGTTTTTTAGTCGATTCTCTCCTAG
ATGTAACCCTACCCTAACACATTATCGAATCTTTCTATCAgattatttct
aaaatttttcccattgctccgtcataaaaaaattattgtttctaATAATC
AGAGGCACTTGCTTTCAAGTGCTCTATCCCCGTTGGAGGGCGAGGATGGG
TTACCAGGGGAATTAAGCGTACGGTTATGTGCCGCTTAcagtgtcccaaa
aaaaaattgaacacaTCTGTTTTCAGGCAAACCCCAATAACCTCTCCTGG
GATGTATCGGCGGTGATGATAACTGTTTCTTTGCTATTatattttctcta
ttttccTTAGGAAATAAAAGTAGCAGTTAAGCATTCGTTAAAACCCGGAC
AGCTTCTTTTGAAACGACGAATGAACAAAAAGATCAAAGTTTGCGGGAAG
AAAAGAAAAGGATGCACGAAAGGGCAGATCTCCGACTTGCCTTTAACGTC
ACCACATAACCTAATCTTTATGAAGAAGGAGCGCAGACCGAAACGGTCTA
AACATTGGTCATCAGCCGACGAAAGCGACTTTGTTTTGGCTGACGTTCAT
TATCATATCGAATGTGCCGAAAAATCGAATGGTCCTATTGTGTTGGCGGA
AAATGTAAATCCTCTTACAGAAGAAGAGATTGTACTTCTCAAAGAGAAAG
GATTTACTCTATAAAGCGATTAAGTAAATTTCGGATGTTGGTTATTATCA
CATATTTATAAAGCCTGAATGGCTAGATGGCGTGCTtaggctgaaaagtg
tgccgtattTCGATAGGAAATCCTGACACGTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00017665TCONS_00017665Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00017665-proteinTCONS_00017665-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:63955..67886 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.41	0.46	0.3	0	1.19	1.04	0.51	1.09	0.32	0.97	1.27	0.29	0.6	0.46	0.46	0.42	0.53	0.85	0.34	0.27	0.9	0.46	0.51	0.62	0.22	0.82	0.12	0.25	0.06	0