XLOC_010541 (gene) - C. hemisphaerica

Overview
NameXLOC_010541
Unique NameXLOC_010541
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000309:152317..163277+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_010541 ID=XLOC_010541|Name=XLOC_010541|organism=Clytia hemisphaerica|type=gene|length=10961bp|location=Sequence derived from alignment at sc0000309:152317..163277+ (Clytia hemisphaerica)
AGGTCAGTCACGCCCGACTGATCACAAACTGGAGAAGACAAACAAGCTGG
CGGATTCATGCATGATCAGTAGACcataagatttttaaaaaatggaaatt
ttcaaacatcaTCGATCACTGTTTGAAATAGAAAGTGTTGATAAACATGT
AGTTTCCACGAACTCGGAAGCAATTAGCTCGTCTACAGNAGTGTTGATAA
ACATGTAGTTTCCACGAACTCGGAAGCAATTAGCTCGTCTACAGATCTTG
ATATCAGCCAAACTTTGCAGGATGAAGCTGCTGCATTGCAAAGTGAACCC
AAAACAATCACAAAGAATGAAGATGGCAACACTCAGAGTTGCAGTCAAAA
GTCAGGTATAAACTTTTCAGTCATGTTTAACTTATCATACTAAAAACCTT
GCTGTATATCTtactgtgagatcgggtaacttgcatcagtggaggctaac
atgcatagccctcaaatgaaggACTCGTCTGGTcatttaaaaatacaaag
ttaaatcaaaacaaaaatcgtaGAGTaaagctgcgagcggagctgaatat
agtttattttaatgaccagccaggtcactcattttagggctatgcatgtt
agcgtccactgatgcaagttacccactctcacggtagTATACTAAAGACA
TAATATTGTTATGATGGGGTACCCAGTGTGTCAGCGTGAgtccaggcgta
gttaatcgatataatcgataatcttgagtaatcgataaataatcgataag
taatcgaatGGATtagacagtcaggcacatcctggcaaatgaacgggtat
ttttcacttgcgaccattggcaaatgaacggggtcgaaaacgaaagtgac
gtaatagcgccgaatacccagtttaattgaaccgggttggaaatatNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGTAGGCCCTATG
CTACCAggggattggattcaattcaaaagtacatcccaattgagatcagc
gaaaaatgttgcttttaatttcgcgaaaatggcgaaaatttgagaaatcg
agaaatttaatctcgcgaaaatggcgaaagttaatccaattaaagtacca
ctccctaaaatctgaGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAC
GAATCGATAGTTGATCGATTAACTATTTGATCgatgattaatcaattttt
gatcgatatgtaatcgatcaaaagctgtgatcgatagccGATCAATTTTA
Aatcgatacttaatttaattgaagtataatcgatctataatcgataaaca
atcgatgacaaaattgatcgataaataatcaagctttgaaaaaatcttaa
gTATCGATTACCTTTCGATtttatcggttaatcgatatctaatccggatc
gattacttatcgattatttatcgattactcaaaattatcgattatatcga
ttaactacgcctggctTAGTTTATAAAGATTCCTGTTTATTTATATCGAC
AGTTTATTTTGCTGGGATTTCTTTTTGCTAATagtccagacggtactaat
cgaacgttcgattgtgatcgaagtaatcaataatgatcaaTAATAATTGA
AGGTGATCAGTGACCacttatcgattctatcggtgatcgaatactcactc
AACTCCAAATCATGGCATTTTCTTCgaccattttgatttgttcgaTCGTT
TTGATTACTGTTCAATTACTTTCAATCACTTTCAATCATATTGAATACTT
CCGATCATATTGTGTCGGATATGTTTCCTGTAGCAAAGCGATGGAATCTG
AAACCGAGTTTATCTTGtccaataaattttgagactgaGTTTATTTCCTC
CAATAAAAAAACACGCAATTTACACGCGAAAACCACTTTTGCTTTCTCTG
ACCAATCAAAATGCGCGATATGGGTTAtttgaggaaacccagggcaAGCA
CACTCAAAAATGGCAGGGAAGTACTGAACAGTTACATCATTATgccaaaa
cattttgttcaaccaccttcacttcaagataggccaccatataATGAACT
Tctttttataggatgaaccatattcatatggctttcagccttgcactcca
tcgcaaaggctttcaattttaatgacttttttgactaatgacaagttaaa
aattttcaattttttNtatgtgtttcattgtttcaatgtttattgattag
ttttgataaccaggtaggtccataaaagtatcacttgttatatttaagta
ttaaaaaggcatgcattcaaattataaaggtttaaattttttctctgggc
tatttattaaaatatatcaaataggctctgtgatggagtgtaCACATGAA
TATGGTACATCCCttaaaggaagttcattctgtGATGGCCTCTCTTAGAG
TGAGGATGgctgaacaaaatgttttggtcatatcagggggggggcacgca
gttactacaagacagtatgacacttactaccgtggtggtactgtattcag
aaattatgaaaacagttactacacaatGTAGTAACTGctttttgggggtg
gtgccaaacactaaaactagtacttttggtgtagtaagtgcttatattta
attctttttaaagaactttcaaaaattttcacaaaaaatgaatttttttg
tgaaaaaattctttgttaaaaaaaatattttaaaataaatggacgaaaaa
aaatttgaaatttttctcagatccaactttgaaattatgctttccctaat
tatcattgaAATgctctcaacagctgttaaccaagcaaattaaaagaaaa
tctagcacaaaaatggctttaggttgaaaaataatcgtaatttagggtaa
tttcgagcatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctcaaaaacagggg
tggtacctggtaatcttttctgaaaacagttactaccaaggtgtagtaac
tgcaaagggtggtggtcctgaaaaaaaagtgttgaaaaagcacttactac
acatcatgtcttgtagtaactgcgtgcccccctgGGTCATATTGATGTAT
ATAACTGCTGAAGGTGATTCTTATGGCTTCTTTTTGTGGTTTGGTTTTag
gtcaatgtttttggtttttccaaGGTATCTAGATGTAATCAATCAACTgg
ttatcgaagtaatcaattggttatcgaaagtaatcaataacaatcaaagt
actcaaaCGATTACCGAGTCTtcgaagggttgttaagaaagtgatcgaag
actcatcacaatttttttgaaattttgatacttGAAATTTGATTATTAAT
CGATAAATGGTTGTTCGATTACTTCGNtcacaatttttttgaaattttga
tacttgaaatttgattgttaaTCGACAAATGGTTGTTTGATTACTTCAAT
CATAATAATCGAATGtatcgattagtaccgtctggaatAGTCACTATCGA
AGGGAGTACAAAACACTTATTTGATTTATTCTCTTTGATTTAGTGGCTTA
CTGGTCATGTGGCTTACCCTACCTAGAAATTTTGAAGGCTGAGTTCTCAA
TAATAGAAACAGTCAGAAATATACTTTCTTTTCAGCATTGCCAGCAAAGG
GCTAATTTTTCATTAGATGCACTGATTTGTGGCTTAGAGTTTGTTAAGTG
GGCAAAAATGTGGCTTACACAAGGGAAATATAGGTGAAAAGGTGAATTTA
GGTGAATATGTAGGTGAAATATCTGGAAATAAAGGTGAAATTTTATGTCT
CAtattttcagtgttttttcCAAGCACCCAAATGCCCCCGTTAGACGGTG
GCattaaactcaattcaaattgagttcattgataaattctataattttaa
ccgttttaaagtGCTAGTTAATGGTTAAGACAAAAATAGGCTCAGCTTTC
TGTGAACCCCCCACCAGGGCTAGCCCTGGACCCACCGGGGGCTcgagggc
cccccccccccgggggggggggcccccccccccgggggggggggcccccc
cccccgggggggggggcccccccccccgggggggggggggggcgtggCCC
CCCCCGTGGGTCCAGGGCTAGCCCTGGACCCACAGGGGGCTCAAGGCGCC
CCCAGCCTCTGATATCGCGGCTTACGCCTTTgttaaaaactcaatttgaa
agtaCAAACGGAGGCATTGCTTGGTGCTTCATTAAAGTATAACACCAGTA
Ggtgtaaaaaattacaaaaaatttgttgtaaaagtacaattttgtggctt
acaaagtcacattaaaaattatcgaaaagtaagccacaaaaaaactacat
tttaaaacagctagaaagtatgtacatttaacatctttttaaaaattcaa
cctttcctctGTCAAATTAAGAAAGTCCCATTCTAAGATGGCTTATCTAA
TTTGTGTGGCTTACATTACTAAAAAAGATACGAATTTTGAGTTGAAGCCA
CATTTTTAGCCcaattaacaaagaaaaaaactttattcaTAATGTCTTAG
TATTTCCCACAacattgtaaaatttcaagacTTATCGATTAAGACTTCAT
CAGCTAtgacaaaaagttgtttttgggcatttttcaaaatgtcacactat
ttttgattggGATCAGCTATAGAAGACTTACGTCGCATTAGATTCCCAAA
CTTCTCAAAGGGATTTGAGCCAAGGCCCTCAGTTAGAGATTGTGTTATGC
TTTTCTAGATCTCTAGACACAGGTGTCTTAGTCGAGCAAGATAATTCCTA
TGTGGAAAAGGTTAATTTTCAAATCTTGTATTTTGCTAACATaacattaa
aaaaacaattgCACAGGAGTAGCCCTCTTCTCTTACTCTTACCTTAATAA
GGTAATTAACTTTGGCTAGAACTAATTTTGGTCTGgagcaaaaatcataa
aattcatGAATTGAGGAACTTACTTTGGGAAGGGagaatttaactttttt
gcccaaaaatgaGTGTTTTCATCGTTTTATCTCTAGGTCATGGAGGTGTC
AATCAACTTGGTGGTGCCTTTGTCAACGGAAGACCTTTACCAGAGCGCAT
TCGGAAGAAGATAGTGGACCTTGCTCATCAAGGAGTTCGCCCTTGTGATA
TATCGAGACAATTACGCGTTTCTCATGGTTGTGTAAGTAAAATACTCGGA
CGTTATTACGAGACAGGTTCTATAAGACCTGGAGTTATTGGAGGAAGTAA
ACCCAAAGTTGCCACACCCTCAGTCGTTCAAAAGATATCAGAATATAAAC
TGAATAACCCTTCAATGTTTGCATGGGAAATTCGAGAAAAGTTATTGAGT
GACCTGATATGTGACAATGAAACTGTTCCCAGTGTAAGCTCTATAAACCG
TATAGTTCGAAACAGGCTTGCTTCAGGTAGTCTTTCCAAAGAACCAACAG
AAGAGGAGATAGACACATCAACCAACGAAATCATCAAAGAAGAAGAACCC
ACTAATGAGAATCCTGTTTTTCAAGGTGCAATCCCGATTCCTATCGGAGC
TTTACCGGCAAATCTGAACTCGTTGAATAAGTTACCACACACACCATACT
CCGTGAATGGGATCCTCGGGATAGCTGTTCAACAACCAAACGGAACTGTC
ATTATGTGTCCACCTGAATATTTTGCAGCACACCAAGTTCAAGGGGCCAC
TGACTTGTCACCCACTGAACATACCAATGGAATGGCAATCCAAGTGGTGA
ACGAAGCTGAAGATTCTCACACTATGGCTGACACACCTAATTTAGCTGCT
GCACAATGTGattttttagtttaatttttcgattttttctctTTCGAACC
ccttgaaaactatcaaaagGCAGCCTACCTAGATTACTATTGGAGAGCTC
CATGGAAGTGTCAACCTCTACGGAATCTGTCTTtctttcattacttttga
tagaaacatccatttaaaattaaatttggtgaCAAGTTTAGCACTTTATT
CTGCCAAATGccaaatatttttcttgatgttcaaaaatattaaatatgaa
aaaatggTAAAAGACAAAACTGACGGATTTACCCAACAATATTGTGAGGG
CATTGCTGTTAAAAATGGTTGTCTTTTGGTCATGAAGTTTAAAAATCGCA
CGTAAGGCcataattttggaaattataATGAACATGACATATCGACTCTT
TATCTGTTGATCTTAAAGTAGACTGATTTTCTGTCAAATTCTTACATCAT
GATAGGAATTGTTCAAGAATAACTTCAGGGTTGTGTAAAACTTCTTGATT
TTATCAGCcttaatcttcaaaattttcagacttaATACCGATCGGGTCAA
CGGAGGACAATCAGAACTTGGTGCAAATCAACTACCCTCCATCATTACCT
TCTCTCGAAGCAGAAACTGTTGAGAAAGAACATCCCCTACCACAACCTCC
GTCTTCACTTGTCGAAGACGTTTCCATTCCTCCAACCAAACTACACATCA
ATACAACCAGCATTGAGAATAAACTGAAGGAGAACATTGATAACAGTATC
TCAGCCTCCAATAAAATCTTGATGAAGACAACACTGAACATCAACACAGA
CTCTCAAGAAGAGGAACCATTGCGTGTCCACCAATCACCTTCACCCACCA
CTAAATACATCTACACCAACCCATCACACCAAGAAGAGGAGAACTACGAA
GCAAGACATCCACTGCAAATCCAACCAGCTTTCTTTCCCAACAGTCCTCA
AACATCCCCGGTCTCTAAGCATTTCCTCGAACACGACCGCAAACCAGGTC
GACGTTTAAGGACGTCTTTTTCCACCGAACAAAAACAAGCGTTAGAAGTG
GCCTTCAAGAAAACACCGTACCCTGACGCCATCCAACGAGAACAACTGGC
CACCAAAAATCAAATTCCGGAAGCCAGAGTACAGGTTGGTTAGGTTTTGT
GTTTTTTAAGTGGAGTATCTCAATAAATAtagaaatagttttgaaaatac
GTTGAATGATTCGATCTTCTAATCAAAAGGATTGTAATCGAATGAAATTC
CAAGCCTTTCAAACAAACAATCTTTCCTTAATCCTACAATAGAATAACAA
ATAAAATTATCTTCGTTTTTAAGGTTTGGTTTTCGAATAAAAGAGCCAAG
CATCGGCGGCTGGACAAAAACTTCGACTTGCTGAAACCATCTAAGAGAAG
AAATTCCAAAAGCATCGAATCTCCATTATCTCCACCATATCATCCACACA
TGACACCAACATACGTTCCTTTATCACAACAACATTCACAAATCTTTCAT
CCATCTCTTATCCCCATCATACCAGCAGCAGGCCAACAAATCGCTCTCAT
TTCGCCATCACATCTTTATAACAGTGTCCCTCCATCGTCGAAGGAATCTG
TTGAAGAACATTCGAAGAAAACGAACGAGCCAACGCCAGTAGCAACAGCC
AATGAACATTCCCCTAAAAATATAACATACATTACTGCACCTACATTGAA
TTCTGAACAGCCAACAATGATACCGATTGGGGCGGTTCACCACCGCACAC
ACACGGAAGAAGCGATGGAAGAAATGCCGCAAAGTAAGCCACCACACAAC
CAACAGTTGGTATATTACGTCATCCAACCTGCACTCACTGAGAATCCGCC
TCTTTACGGATCTCCTTACCATCGTCTCTGTCCTCCTTCTCCTTCCAACG
AATATGAACATGAAAGTCGAACGTTCAAAGATGAGGAGGTTTCTGATGTT
GTCCAAATAAGAGAACAAAAAACTTCTTATACTTCTCTTAGAGATCTCGT
TGGCACTTAGATATATCACTAACATTGGTGCTTTTTCAATGAATCAGCTA
AATTTCATAGAAGTCTAACGTCAGTCTATTCTGAGAGAAATTTCTTAGAT
TGAAAGTCTTAAATGTTCTTAGATTTTGGGCTTTTTGTTCGTCTTAGACT
TTAGTGGGAAATAATTTTATGTCATAgtgtaaaaatgtttttctgtttAG
TTAGCCAGTTTGAAAGTCATTCGAAGTAACATTTTGTTGGTTTTCTGCTC
CTCAGGACCTGAACAGACTAATCTTGACACGACTGACGACTCACCATTGA
CAATAACAAATGCTAACTTACATTCTAACAACCTCACTAACAACACTGAA
ACTGAAGAATCCAAACATGTTCTTCCTTCCATGAAAGTTTTGACAAGATA
CAACGATCGTCACCATCCATCACTTTCTCATTCTTTCATCCCACCCGAAc
aatggttgaaaaattcggCTGCTATCGCTCTTGGCGGTCGAGCTTCATGG
TAAGTAAACACCTTTTTACGAGCGATTCTTGCTTGCATTGAAGTATTCAA
ACATTTAGAAAAGAAATGAGATCGTACACAATACTTTACAGAAACTAATT
CGGGAGGTTAGTTTTAACAACCAGCAAAAGTCCTACTTTAATCGGGTTAA
ATattgcgagattaaatttcgcgatcgaaaaaaatcgcaaaattttctgg
GTTTAATTTCACAggtcagagttttgaaaaatttcgcgtggatttaattt
cgcgaataagcctgaaaacagATGAAAAATGTTTCGCTTCAAATGGAGAC
TTTGAACTGGTTTCTCCGCCAAAATtgcgattttaaaaattttgcagtaa
aaaaaaattcgcgacatcgcgaaatttaatctcgcgaaagttaatccgat
taaagtagaaaatttgacgAGTGATTTTGCCTTTGATGAATATTTGGCTA
AATTCCCcaaaatcattaaaatcaaaTCACTTAATAATAAACAACCTCTG
TCTGAAGGTGGGAGGGAAATATATGTTTGCGTCGTTTCTAAACCAGAAAA
GCGCAAAAGCCTTGAGATATCTAACGTTTcgaaggtttttgttttttggg
gGTGTCAAGAAAGGGGAACAGACGTCTTTCTGCATTTCGAACTTATTGCT
TGTACGATCAGAAACATCAGGTGATATGCGATAAATTGATtggagtttta
ttttatttttttcaggacaTCTCCCTTGACACCGTCACCTCCTCCGTTAC
ATGTTGTCTCATCTTCTGGACAATGATGATGATTTTCTGGGAAACTTTGC
TGTGCAAATATACCAATGCGGTGAAATCACCATCATTGTGACAATTAACG
ATTACTAACAACACAAATTAACTACTTTACAATAACATCATTTACATTTA
CATCTACTTGCTTGTTGGAATCTTTAAGAGTAGTAGGAGGTAACAGGGCA
CTTTTTAAAGTTCTGAAATGAGTCCACTCAGCAGGTTGTCAATGACGTGT
CTAAGGATATTTTTGGCATAATAGGCTTTAGATATTAGATATTCGATTAT
ATTTAgagattttgggaatttttaCGATTGTGATCGTGACGagagtaaaa
taatttttgtaggCCCTGTTGGTACTTGTTCCCAAAGTGTACACAAGCAT
TTATTATCCGGCTTGGTATTCTGCCTGAAAaggtacaaaaagaaagagct
agagggctttttagaaataagatcataaatcttttttgaaaatcagagat
cCTCGAGCCTCCATAATAGTTAACTCCTTTGCGAACAAAGCTAGAGCatt
atttgttttttgaaaCAATGGAGGAGGGACAATTTTTTCTCTCCACCGGT
CACTTTAGTCGGTTATctagtgtctataataattccttggTGTATTTTTA
GGAATATTTTGGTTCGTTTGTCTTTTGGGACTGGTGGACGGGTTCTTCAC
CAAAGTTAAGTGCTGAGCGCTGATTATCTTCAAAAGTATATTCAGCATTC
CACATTTCAACTCTTGTATTATTAAACCTATGAACTTCTACAAAACCAAA
CGGTGTGACGTGACGACTGACGACTTTTCGTTATCGTCCCCTGAAATTAG
TAGATTTCATGTTCAATGTCCTTTTCATCATACGCAGAGTACAGAAtaga
atattttttattaatttttctagttttttttttggaattgtaAAAAATTA
TCTATATGGatgttaaaatttcttttagagtcgagtttttatatataaat
agtataatttcgttatttttggtATGGACTTTTTATCCATAATTTTTTGG
AGCaaattttgggaatatttaaAATGGAATTAATCAATGaatttattctt
tcaattttctt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00018812TCONS_00018812Clytia hemisphaericatranscript
TCONS_00018813TCONS_00018813Clytia hemisphaericatranscript
TCONS_00018814TCONS_00018814Clytia hemisphaericatranscript
TCONS_00018815TCONS_00018815Clytia hemisphaericatranscript
TCONS_00018816TCONS_00018816Clytia hemisphaericatranscript
TCONS_00018817TCONS_00018817Clytia hemisphaericatranscript
TCONS_00018818TCONS_00018818Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00018812-proteinTCONS_00018812-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000309supercontigsc0000309:152317..163277 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.49	14.9	4.8	3.15	40.6	32.51	27.68	29.48	10.37	17.09	14.34	9.11	8.02	9.11	10.04	13.09	14.85	13.57	8.73	7.47	12.87	13.39	12.55	13.54	23.04	20.05	8.67	7.14	16.97	18.55