XLOC_011957 (gene) - C. hemisphaerica

Overview
NameXLOC_011957
Unique NameXLOC_011957
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000385:451188..456996+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_011957 ID=XLOC_011957|Name=XLOC_011957|organism=Clytia hemisphaerica|type=gene|length=5809bp|location=Sequence derived from alignment at sc0000385:451188..456996+ (Clytia hemisphaerica)
CATCGACAGAAATTGTTTGCAACAGATGTCCATCAGCTCAATACTCAATG
TCAATTGgaagttttcttataatttttttggaaagtatGAGCAAATTGGC
AAGTAAAACAAATGCCACTAAACTCAGCAAAATTGCACAAATTGAAAAAG
CAACTTGTAAAATCTGCCCAACAGGTTCTCGCTGTCCAGATAACGATTTA
ATAGCACGTGACAATTTCCATGGCTTCTATGAAAATAAAACAGCGGATTA
CCAATTCCTTTTATGTCCCGAAAGATACTGTTGTTCATCAACTACAAGAA
ATTGCAAATCTCCAACAACTTGCAATCTAAATCGAGATGGAAGACTTTGT
GGCAAATGTGAAGAAGGTTACTTCATCAGTTTCTTCAATAATAAATGTAT
CAACATTTCTGAATGTACCAATGAAAGTCAACATTCTTTCTGGAcgctat
ttttcatttcattcatcACTTTGGCTGTGCTGCTAACATTTCTTAAAGAT
CTCATCACTGCTATCAAATGTGCTGGGCCGATCATAATGGTATGTTTAAG
GTAAGAAAGGATTAAACATTTGCGGAGTTCAAAGGACACGATAGtcacaa
gtttgtaatattCGCGCAATTTTGTAATATTTGTGGAGTGTTGTGATATT
CCAGTTGCACAGTTTTGCGATCAAGAGTTTGCACacttttaagatttaaa
aaaaaacatcaattgttttctgaaacaatgaaaatacaatgatcgctctc
catcgttttatgagtcgtttatccagtgtataataaatctttgatcCTAT
CAAGTAGCacttttaagattttaaaaagtttagTTTTATTCTTTACCTTG
AGGGATTGGATGAGagcagaaaacaatcaaattaACTTTTTAGCATCGCG
AATATACATAGCTGAAAATAATAATTACTTTATTTACCAGCTCCCCAACG
TAACGAAAGAAAGAGACCTCCTTTTTCGTGGCGTTGAACGGAGTTAATCC
GAGCTTTAAGTATTAAAATAAGATATTATCACTCCCGATAATATTGAGAA
TTTTAAAGGATTAAGCCAGCTCTTTGCAAAGTATACTTGTTTTATAACGA
ATGAGAATAAATTTGCACAGAATTCTGTAAGAATAAAGAGTTCTAAGTca
gcattttgatttttggtttaAATAATCTTTTGAATTGGATAATTCGGGTA
AAATTCGGAtaaaagtctgttcacgataagtgtgcactcttttttctttt
gcctataacttttgaaggaattcttcaatttttatacatttggtatcgtt
ggagagatatttgtgagtcgAACAATTTGAAGTagaaaagtctttaaaaa
aattctgaaaacgaagatgaaaatgaagaagaaaaaaatgaagatcttgt
agagaagtgctataactttcattttcactgaagagATTTTGTGATCTTAG
ttggtcatcactgtgaagaaatttcactaaaatatttattcaatgtaaag
ttatgatacaaagttaataagtgattgacactaaaaaacagcagaaaaca
gcgtttttagacgtaaatcagcttataactttgtttgatatcttttgact
gaatgattatttttgagaaattttttcacagtgatgacgttcgatataat
caaggattcacttcattatttctagatatctttgaatctgtacacAATGA
AACACTTTAACtgatttttgacatattttaggggtattttgtggaaacga
tagtttttcgccaaaattaaaattataagaactatattcaagataacaac
tttcctgtcagtttgaatgataaNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNcaaatacgacagagatagaacagta
gaaattcaaatgttatcattccagccgcggctttcttatactatggtctT
ATGAACTTGTAAgataaaacaaactatataaagtcAAATTAAAATTATTC
TTCTTATATACCCCCATgaaggaaaaattaaatttaccGGTTGCGCCACA
GAAAAACGTTTTTCACTTTAAACAAggtgaataaaaaatttgaaaaatgt
gattttttagtgtttttcagCCTTTTTGAGTGATTTTAGGCCAGAAAATg
agtattttagaaaaaagataatttttgcaatttttctttaaagtagCTTT
CTCGAGTTCGATGGCTTTTAACAAACTGAATCCTTCTCTaacgaaaagaa
aaacttcaacttGAATCAGTCATTTATCAATCTTTTTCCCGTATCTGTTc
gagtagcctggatatccaagctcaaaattttagaaaaaacaaaaattacc
tcaatatacaaagttctaaaattatagagcttggtctccctggagaatga
aagtgaaaacccatgtttcctagccaacccagggcagcaaaacagaaatt
aataaaaagcagtcttacaagatctaaaactattNcaactagactgtgaa
atagtttacagcctggatatccaggctactgtTCGAGTTGTTAGGTATTT
ATAGATTTTATACACAAGCAcatattaaaatatttggttctTTTAAGTTA
ATCCTTCCTCTTTTGAACGAACGCATTAGAGTTTActgggcccccagcgg
tttgcgtgaatgcgtgaatgggcattttcggttgcgtgaatgtgtgaaaa
ttggaaaaaaagtgcgtgaatgtgtgaattgaaaaagcttgcgtgaacgt
gaaaattcactttttgattaagtgaatgcgtgaatctgggctattttgtg
cgtagatacgtgaattttcccttttttccaccaatcatgtgcagttttcc
cgattttccaatgttttactagactggagtcgtttataatgcgtgtaata
ctaacaataccaatactaataataataataataatacgggatttagtttg
tataaacgactggaagaatccggtgtaccagccttatagatacaggggct
agctacgcagaaacttgcgtatcgagaaaacaatttatcaagcaacaaca
aactctcacaacgaaatcaactcaaatgaaaaactttcaatacacaaatc
caggcacattttttttctcaagaattattttgagcgggaaaaaattataa
ttgcaaatattgacacttttcttttgtttggagttagtgcaaaaaggttt
ctagacgactaaaattgttccatttgTGGAATAATTACTTGATTTTATAA
AAGACGTGGATAAATCGCACGTTCAGGAGTGAAACATTGTCAAAAAAAAC
TCaatcaagaaaacaaactgATCGCATTTCGAATTGAGGCGTTCCTCAAC
ACCCAACAGCTAATCATCATCGatcaagaaaacaaacaaatcaCGAATTT
CTATTGCAAAGTATCTCAAAGGTAGGAGGGACAGTAACAGATTGCCTTAA
TTCTAAAACAAACTCATCATCACTATTATTAAACTCAAAATCCTCTGCGA
ACCCCTGAGAACCAAAATTCTATCACAACCGCACCCTATTTTGAGAATAT
CAACCAATAAGATTCAAGCAGTGAAATCCCATTGTTGTTATAAACCAATC
CGATCCAAACACACACCTAGCACGAACAATAACTATTATCTGCACTTATT
GTAATATTGATTAGCATAACTTATAAATAAGCTAAAATGTATTTAAACTG
CGGGTTTATGAATTGTAAATTAGTATTGTAGTTTTACCATCTTGAGATGG
ACATAAACTGTAAATTAAAGAAAGTATATCACAttggagaaaatgaaaat
taaattgtCCAAGTTACTTGCTAAAGTAAGCTAGTTGCCTTAATCTAGGT
GGTTAATAATCATTGCTTTAGAAACTCGAATATAGTTGAATTGCTTATTT
ATGTTTcggacagactttatgttatgattctctatcactgactcttttta
caaagcattgatgacttttttaagttatgttttcaacgacgggaataaaa
atatcaactttgaacttcatccaagatcttggatggtcgtcatggttact
tttgtcttcgttgattgcgctgaatagaatcttgattcgtcggcacagag
catcaatatatgattttgacctgtgctagattttttactttgacatgtga
catttgttttgattttgtatccgctgcatgcagtttgtttacaaatttcg
caagtactgttatgttcCTTTAAATAGTGATTTGTCATAGATGATAATAT
AGCCTATATATTGCCTTGACcatgacctctatgaaacaaaaGTGCGcgat
aaaaaattacaaaagtgcgTAGAAATTATAAAAGTCGCACATAGCAGTAC
CCCTAAACCAAAAGACAATTTTATTCATGGGACAAAAGTTCtctaaatat
atatttttgtgaATTCCATTTTAGGAAAACTTGCACAAAGAAAAGAGAAG
AAGATGCCAACGAGATCGATGAAATGGAAGAACTACAAGCAGGAGACAAC
CGAAGAAGACGTAAAGAGATTTCTACTTCATCAATCTTCAATATTTTGGT
CTCTTTTTTTCAGTTGAAAGCTTTGATAACAGTTCAGAGCAATGAGAAAA
CGTTAATCGATAAACTTATGAACATGGATATTATGGTTAAAAGCAGTGGA
GCTTTAAATGCACTTTGTCCTTTCAGGGGGTTTAATGTTGTATGGCGAGA
GGTTTTAAACGGATATACGATCCCATTTTTATTGTTAATGACTATTGCAA
ATTTACACT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00021346TCONS_00021346Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00021346-proteinTCONS_00021346-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:451188..456996 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.42	0.3	0.61	0.67	0.66	0.87	0.22	1.01	2.34	2.65	1.12	1	0.58	0.6	1.8	2.31	0.18	0.56	0.21	0	1.29	1.37	0	0.08	0	0.12