XLOC_012390 (gene) - C. hemisphaerica

Overview
NameXLOC_012390
Unique NameXLOC_012390
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000405:28848..37395+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012390 ID=XLOC_012390|Name=XLOC_012390|organism=Clytia hemisphaerica|type=gene|length=8548bp|location=Sequence derived from alignment at sc0000405:28848..37395+ (Clytia hemisphaerica)
CTTAAATTGAGCAGGAAGCCGGGGCCAAAACTAAACACCCAGAAAGTGTT
GACACATTTATTCATTCAAACTTCTTGATATACTTGTTAAAACTCTTGTA
CTAAAACCTTTGAGGGTTTGGATTTTGATcagttttttgcttgaaaagtt
GTTCTTCGACCTTTCCGCTTGGTAAGCGCTCGATTTCACATTATTTCGAT
CGAGAGAAGACTTCGCGTTACCGCCCTATTCAAGATTTACAGAGACAGTN
CGTGTCACACCTAACAACGACAGAAATCAAGCTTTTTCAACTTTTACCaa
attcactttcgttttcaatcaCTCAATTGCGacgctaccattttgaataa
tttgacgtGTCGAAGAGTAAAATACAGaatgaatatttgaaaatgttata
cttttgttttatcaaattattcaaaaaataagacTTTCAGAACCCCTACT
TTTatgaaaaagataaataaaagcATTTTTGTCACTTAGTAGCAACCAAA
TATGCTTAGAAATGAAACATTTGACACCCAAGTTTGACTATTATCATTCT
GTAAAATACGGCTAAATAATCACGCTTTTTCCTTTCACTCGGAGTTACCA
TAAACCGGGGGTTTAAAATCTAACCTTAAACCTATTTTCTCTCGtcaaaa
aattcttaaattgAAGGAAGGAACAAGTAATATTATCATCGTGTGTACAA
AAATTTATAGCTTTAACATTTGTGAGTTTTACGTGTCTCTATGAAGTTAA
ATCAATGGACTAATTGTCAACACTGACACGCAGTCAAAGTTTGTTTTCCC
ACGTGATCATTTTCTAAAGGATAACAATCATAAATTAACTTAATCGGTAA
TTTATTGGTCCAGCTTAAATTGAGCAGGAAGCCGGGGCCAAAACTAAACA
CCCAGAAAGTGTTGACACATTTATTCATTCAAACTTCTTGATATACTTGT
TAAAACTCTTGTACTAAAACCTTTGAGGGTTTGGATTTTGATcagttttt
tgcttgaaaagttGTTCTTCGACCTTTCCGCTTGGTAAGCGCTCGATTTC
ACATTATTTCGATCGAGAGAAGACTTCGCGTTACCGCCCTATTCAAGATT
TACAGAGACAGTCAAAATGGATGAATTGTTTTGGTAATTGTATGGCTAAT
ACGGTTAATTCAACGTAATTGTCTTATGAGGTTTAGTATCtccttttttc
atattttattaGTACTTATTTTATCTTAATCTGTCTATTTTCTAGGTAAA
ATACTCAAAATGTCCAGGTGgggtaaaaaacaaaaacttccaGAGGTTTT
CAACTCTGTGGCTGAAGGCCTGCAGAAACTTTACAAGGAGAAATTACTTC
CCCTTGAAGAAGCCTATAAATTCCATGAATTTCACTCACCCAAACTTGAA
GACAGTGATTTCTTTGCAAAGCCTATGGTACTTTTGGTTGGTCAATATTC
TACTGGTAAAACAACCTTTATCAAATATTTACTTGAGCAAGATTTCCCAG
GAATCAGAGTCGGCCCTGAACCCACAACTGATACCTTCACATGTGTTATG
CACGGTAATCATGATCGTGTTGTTCCTGGAAATGCACTTGTTGTAGATTC
ATCAAAATCCTTCAGATCACTGTCCGCCTTTGGTAATGCTTTCTTGAACA
GATTTGCCTGTTCAGAAACTGCAAATCCTGTTTTGGAAACAATTACCCTT
GTGGATTCCCCTGGTATCCTTTCTGGTGAAAAACAATCAATTAACAGAGG
GTATGATTTCACAGGAGTACTTGAATGGTTTGCTGAGCGTGTAGATagaa
ttattttgttatttgatGCCCATAAACTAGACATTTCTGACGAATTCAGA
CGGGGTATTGAAGCTCTTCATGGATTTGATGACAAAATCcgtattgtttt
gaataaagcTGATATGATTTCCACTCAGCAGCTGATGAGAGTTTATGGAG
CTATGATGTGGTCTTTAGGAAAGGTCATCAATACACCTGAAGTAACAAGA
GTCTATGTAGGATCATTTTGGGATCAACCATTGAAAATGGACGATAATAG
GAAACTTTTTGAATTAGAGGAAACAGATTTGTTTGCTGATTTACAAGGAT
TGCCAAAGAATGCTGCACTACGAAAATTGAATGATCTGATCAGAAGAGCA
AGGTTGGCCAAGGtataaatttttcttcttttttcaaatgcgTAGTATCA
TTTCTTGCCAGTAATTTTAGACCATGAAACTCAGTTTACTTTTGATACTG
TGTGCAGTGTGTGTACTTCTTGGTTCTTTCATTACATAAGAACTTTGTAA
TTTCACGATTactaaaatttttttcctttttctatttggttgagttgcag
gaggctttaaaGGCTTATTTTCACAACTATAGACATTTtcaatgagcgtc
ccgtcagcaccttgaactgactacccaattcccctcacatggcatgggtt
gacccaggcGAAGGTTCGTTCACTTGCTCAAACCATATTGGTAGCCAAGG
GTGTTATTTGTAGTTCAGCGTGTTTTCTTAACAAAGTTCTTGATTTTCTT
AAAAGTTTCAAatcaatttctttcaaacttGACTTTGGTGAGGTAATTTC
AAATtgaataatttgataaaaagaaacatataatgaaaagtgacaaaaaa
taaattttgataaaaatatcaaaatagtaAGGAGTGAATAAGAAAACGAG
TGAAGGTTTTAAAGTGATGGATTAACTCTTTGGACTTTACTATTTTACCA
AAATTAACCcaaaattcattgaaacattGGAAAGTTTACAAAGATTTAAC
AAACTTAACAattggaaataaaaaataagatttaAAGACCTTGTAAAAAT
TAAACCTGTGTAAAATTCCTGTCTGAGAGTTACCCCTGCtatgtgttttt
gagttttagaatcTTCATCTTTAGCTTGATTAATAACTATTATATatgag
agatctttaaatttcattaaatttgaattagaaATTAGATTGGCTAGTGG
TTAACACAATCAATGGATTTctgaaactttttaaaacaaattgaaaCAGG
TTATATATATACCCCAAATAATGGGATAACTCTCAGATGAGAATCCTATA
CACAATTAGTATCCCCTATCAAAACATATCGGAGGGGAGCCTATGTATAA
ATTTTAAAGGTGGTTTTGTAGGAAATATTGTATTGTATAAATTGTAAAAT
CTCAGCCTCAAATATGTAGGAGGAACCCCAAGGTTTTTGTTTGTGTCACT
tttggaatttatttttaactttGAGCTTTGATAATCCCCCAGAAACTTTT
TAATAAGATCATAGAAAACAGTTGAAACATGTAAACCTCTGTCAGGCTTG
CTATAACTCATTCATAAAGTGTCCTACTGTTTTGAACGGTAATACAAGTA
TTTATTGTTGAAACTTTTGCAATAAATGCACAACTATTACCAAAAGTAAT
TTGATATTTAAAGGTCATGAAAGATTACTATTACTAACCTATGAATTCAT
TATTAACTCTACTCGTTCATGTTTAGGTGAAAATAAGGTATTGTTAAAGC
TCCGGTCTTGGTTTCTCTTAGTTTGACGATGCTTGAACAAAATTCATAAT
TTATCCAAAGTACTTCAGATTTACTCTCACGTTGAAAAGGGTCATTTTTT
CTAACCTAACAGTGTTTGAAAGGTTCAAAGGTCGAATTCGTGTTATACTT
GTCTGTGAACTTGAAGTGTTGAATAAATaagaaatttcacttttctCAAC
GTCATAACTTTCAACAGAAAGCATTAACCTattaaagttttctttaaaaa
atcctAAAGTCAGAGCATCTGAGTTATAATTTTAGATGTCTGAAATGTTT
GAATTGACTGACCACTAATTCAATTTAAAGATATCGATAATTTTGCGAGG
GACTTAGATTCTAACGGAAAAACTACGTTCTTTTCTTTGAGAGCCTACCC
TAACTGTTCAGGAAATCGCATGTTTATCAAGTTAATTGCCCCCCTTTAAA
GTGTTAAAATGGCATGGGACTTCATAGGGTAGAGAGGATACTAGAAACCC
CTTTGTTGTTTTATGAAACTCTCAATTTGTTTGAAATATGACTCTCATTT
TCCATGGCGACTGAGCTATGATCAAagatatttgacaaaaatatatgACA
GTTTTATGTAatcaaaatgaaagaatgaatgaTTTTTCTTGTTTAACTCT
GAAGTGACCACAATATTATGAGCACTTTCTTAATAATAACTACAGACGAA
CTTCTTTCATAAAAGGTTTTCtcatttcatcaaattttaagaaattcatc
aaaaatcattgaaaacccTTCCCtatcatcatcaaaaacatatttttagt
aAAGACACAATATTTGAACAAATCCATGGCAATTTTAtgtaaactttgtt
ttgaatttcaacttttctcacGTGGTAAAATATACAACGTCACAACTTTA
TTATGTTCGGGGGGTCGGTCACCCAGGCAAAATAGGGTACGGGAGGATGT
CACGCTCGCCAGGTACACTTTTTCGTCTAAATTTCGTCCGACATTTTTCG
AACTCCAGGTACGTAAGTCACGTAAGCcacttttttttgtcatttttgat
tGTAACCCTTTAAAAATCTAATTCCAGTGTTGACCTGACAGCGTTAACAA
TTTGCATCATCAGTAAGTTTTCCGAAATAGACTAATTGCTTGCCGCCATT
TTGTATGAACGCACGTGTATGACGACAAGCTACCACATGACAAGAAATCG
CCCTTAGTTACCAACATGGAAATGATTAGAGAGGAAAAAGGTTGTCATGT
CTGCGCGGAAGTTGTTTTGATTAGAACTCATTATAAATGACATCAACTTT
TCCAGTTGTTTATAAGCAATGTTACGAAGTTGCTATATACATAcactaca
gtatgtggcccccaaaacggcgatcaaatttaaaacttctctcaaatcta
gaggaaaagaggttttacaaaaatttttgctgcatgaaaaacNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNttaattttttgttataaactattatttcaagctaa
taggaatggaattccaagattttttgctgtttctcatatttagaattttc
ggttttatcaatgttaattctagggccccaaaatactggttgacctttaa
gatgctatatcttttacccatcgtCTAAAGTCACaaatgtatctgcattt
tctgaacggcattaggtgtagaaagttccctataccccattttcataact
tattttcaatatccaaatagctagagtgagttatatgcaatttttatcta
attttggtgttaaaatatttctctcagacgcaaatatgttaaatctgtct
caaaccatcaaaaacatgttaatttttaagtataaccatcattctttcaa
aataaacaaaaatcgtttaattctgataaatctacaagtgagaatcctca
ttttaatgatgacctccgttttgggggccatatactgtacccTGTCAAAA
ATCTTTTCCAATGGCGTACAAACCAAATAATAAAATCACCACCCTCTCCT
TTCCTCAAAAAGTTTGATATAAAAGTCCTTTCAGTAACTTTATCTAGACC
AGAGATTTTTTCCTAAAtgcaaaaattacaaagaaatctttttttgcaat
tttttacacCACGTATCTCGAAACATCAATGCTTGTGGCTATGTTGGTAC
GTTTTGTCAATTTAACAAGTTATAAAATACTAGGTTAAAGTTACAGTCAA
ATCTCTCTAtttcgaacttctataattTGATtccttctgtaattcgaact
aaaacattggtcccctcagctgtaAGTCAGTGTTaaattctctctgtaat
tcgaatctttccctATTTCGAAGAAATTTCTTGGTCTATAGAAGATCGAA
TTACAGCGATTCAACTGTAGTTTCgattaattttctttatatttttgcca
attttcgcTCAAATTATGGCTTGTTTTACATTCTTCAGGTGCACGCCTAC
ATCATGACTGCATTGAAAGACGATATGCCATCCGTCTTCGGTAAAGACAA
GAAGAAAGCTGAACTCATCAAAAACCTAGGAGATACTTTCCGTCGTATCC
AAATGCAACACGAAATCTCACCTGGAGATTTCCCAAACCTCCAACGTATG
CAAGAAAACTTGCAATATCATGATTTCTCCAAATTCGCACCATTGAAACC
GAAATTGATCGAGAAAGTTGATCAGATGTTGAATACAGATATTGCTCGTT
TAATGGCAATGTTACCTCAAGAATTCACTGACCGTGAAGACGAGCAAACT
GTCAAAGGAGGTGTTTTCGCCAGCGCTCAAGGTGATTTCAACCCGTTTGC
TGAGGGTGCAGCAGAAGGATTCAATCTGGGTGCAGGATCATCAGCGTGGG
TCGTCGAAAGTACCAATTCAAAAGAGAAATACGACAGAATGTTTTTGGAT
TTGGGTCCAGTAGACGGGAAGCTATCCGGCGCTTCTGCTAAGAAGGAAAT
GGTCAAATCGAAATTGCCAAAGAACGCGTTAGCCAAGATTTGGACTTTGT
CAGATATTGACAAAGATGGACAGCTGGATGAAGAAGAGTTCGCATTAGCC
ATGTACTTGATTGACACCAAGTTAGGAGGTAGTGATGACATCCCAACTGT
ACTACCAGAGCATTTAGTACCGCCAGGCAAACGAAAGCTGTTGTTCGGTA
ACTAGGACACTTTCTGGTGGACTTACATTTAGATGACTTTCAATTAGAAG
TATTATTACAGTATTATAGTGACACTTTACAGATTCTTTTAGAAcactta
aaaaaacaacattggaaaattatttttttataaaggattaattatttcat
tttttttcttctttgttttgtttcgtttttttttgtacaatttttttgtc
cTTTCCAATCATTGATTTAAACTCTGAACCCATTTTCGAAGAAATTTCTG
ATATTTGATAAACAGAAAAACAAAGCAAGCAGTATGCGCCTCATCTACAG
GGGACAGAACTAGTAAGAACTTCACAAAGACTTCCGGGGTGTTGGGTAAA
AGGGTCCAGCGTTTATCAACGTCCAGTGTTTTCTCCACATTTTCTTGTTT
ATAGCTCCGTTTGAacgtttttttatgttttgttttttttgttcttcatc
ttctttttgacgtttagTTACTGTTCTTAAACTGTTCTTATCATTTCTTT
ATTGAAAACTTCTTTGAACACGGTTGGGAATTTATACGCTATGGttccat
agtcattataaaaaactcCGTTCTGgaaatgtattgttttagctttttgt
tcaattttcttttgttacaaacaaaagacaagttgcgatttCCATACTTT
Tgtatcacgttaccaaaatctcctcttgggattggtctattttttaatca
catgatcaaaaagtttgcaaaataaatcgattttggtacgtaagctccat
cttttaacaataaaaagagacaaaagccttccagaccagtgtttttataa
tgactatgatggTTCATAAAATCGATTATAAAGATGAGATTTTTAGTCTT
ACTTAACTCCCTTTGGATACGTCCTGAAACTATTAATTAACATTGCGCCT
GTATTTAACTTAAAAAACAATCTTAACTACAAaactattatttttaaaat
tattctttaGTAGAAAGAGATTTGTCTGTCAATTGCATTTTTTTGCGGAA
ATTTctcatttattttgaatttccatTTTATCGAAACGATAATTTTTTGA
CAGATCTTTTTCATTAATTTGACACATTTTGCAAGTTCTAATTTTTAGTT
TTGCAGGGAAATGTACTTAATAGAATgaagaaattaaattaaaaacag
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00022091TCONS_00022091Clytia hemisphaericatranscript
TCONS_00022092TCONS_00022092Clytia hemisphaericatranscript
TCONS_00022093TCONS_00022093Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00022092-proteinTCONS_00022092-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000405supercontigsc0000405:28848..37395 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
EHD1EH domain-containing protein 1 isoform 2 Homo Sapiens
EHD3EH domain-containing protein 3 Homo Sapiens
EHD4EH domain-containing protein 4 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
224.92	242.62	118.48	95.83	129.95	98.77	247.68	268.81	201.24	239.19	146.18	121.01	90.04	73.88	186.83	228.51	156.1	122.75	59.23	134.55	63.69	66.4	168.99	158.66	60.21	65.65	168.73	134.2	118.66	111.01