XLOC_013298 (gene) - C. hemisphaerica

Overview
NameXLOC_013298
Unique NameXLOC_013298
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000458:85967..95585+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_013298 ID=XLOC_013298|Name=XLOC_013298|organism=Clytia hemisphaerica|type=gene|length=9619bp|location=Sequence derived from alignment at sc0000458:85967..95585+ (Clytia hemisphaerica)
CGATTCTCATCaactgaccataaaacaaacaaaaaaatgaagattgtCAT
TGTCTCTCTTGCTCTCTTGGCTGGTAAGTTAAAtctaaattcttgaaatt
ttttattttcagtaatTTCAACCTTTGCGATATACCTATCTATTGTAGGT
ATAAACTAGAGCATTTCTTTCACATTAGAActccagaaaataaaaataac
aatctCTTTTCAATTACAGTTGCCGCCGCCCTCAAAGTTGGAACCGAAAC
TGGTACCACACCACCAGCTGTCCCATGCCCAGACTCCCTCTGCCATGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NATGCCCAGCCCGTGGACCACACTTCAGTGGAAACATTGAAGACCCACAC
AACCCACACCAATACATCGCTTGCTTCCACGGACAAACTGTCGGATGTAT
TGCTTGCCCAAAGGGATTAGAATTCAACGAGGAATGGAACGCCTGTTTGT
TCAAAGGAAAATTCAAGACCGAGCCAGACCACTAAATATGTTACACATAA
AACCGAAAGTTAACATGTTGCAAAATTATTTACAatcttgtatttttttg
taatttttaatatttttaaaataaatctcAAGCATTCAAAAACTCATTCT
GTCACATGTTTTTTGTTCACACCTTCGCCATTTTAAGACCaattaaaaat
gttgtttttttacgAGCCCTCAAGCTTCTCTAAGAATAAAATAATTGGCT
CGGTCAGCAAAGAAAGAGAAAGCATCTTGTGTAAAGTTTTGttgtttcca
aaatatttcCTCTCTTGCAATGGGAAACAATTAAAGGGGGTATCTGGAGG
TCTTTTTAAGATCCTAACTTAGGTCCCAGTCCCTTGGTTCGcctttttat
gattctgatagcgctcacgaaAGGCTGTAATGATTGTATCTCGTCATGAT
ATGTATCATTAGTAAAATTAGAAGTGGTACATTGCAAGTGCTCTGGGGTA
CAAGATTGGAAATTTGATATGAGACGACATATCCAGAGGATGCagaatca
tggtcgtaatatttgagaaaatagggaaatccaccgggaagttttgaaac
cacaatcgatttgtaagtgctctaaagtaggtttgaagggtagagtttta
actctgagttttaatgcTGGACTTANctagacttaagacttaggacctta
gcatctgaggatccaaaagttcaaaaatagtccaataaggctcagaatat
agcctggaagtctgccaacccctcccaaattgaaatattcgattaagtga
aagagatagcccaaaatcaactttctcgccagaactttaaatcttgaaaa
gcgttaaaataaccggaattctcattctatttcgaccatgattgtacttt
atagagtcaatgaaccagcaataaactttgtttgatatcttttgattgaa
tgaatattttgaaattttttcacagtgatgatgatctaggATCGAAGAAt
tactcctgtgaaaatggtaattataccacatttccacaagaagttgattt
tttcttcttaatttttctttttcatttttttcttccaaatcttttacttg
ataatattccacttgcaattattgttttaaaaagcacagaaccgctatct
aattcgaattctatcaaaagttacagccatttttgtttcagctgcaaatt
attttgagacagactttaaattTGTAACACATATGCTCCAAAAAACATTA
GTCTTCTTTATAAGGAATATAATCAAAAGGAGTCTCGAATCTTTTTAGAG
CCTTTGAACCTTCATTGTAAAATCAAATTGATTAAGAAAAGATAAGTTAC
ATCGATTTTAGTTTAGATTTCTAATTGTTATCAAACATACAGTGTGTTTC
CTATTCACAAAAGGAAATGTAATTGTAAAGGAATAGCCGTTGACGTTGAC
GTCTGATCTTCTGGTacacagttttttttaaataattcaaaaattctgga
agccttcagatgttcttaactcttTGGATTTTAAGCCTACAAATACTCTT
ATATGTTCTAATTTCTAGTGTTTTTAGATTACTCGatgcaattttctaag
aaattgtatGTAATGTATTGAAATTGTAGAGTAAATATAACATTCTTAta
tcatgaaggtaataaaaatatagatggagtaACCTTCTGTAATAGCCAGA
gaagtcataaaactctttagaaatttctttcaaatcggcctcctttgatt
accaatccttgatagcaaaaatcagtcaagatatagattataagaactaa
agtaaagttattctgtccaacaaaacctcgtatttttaggtaaaatggga
atttttttccagtaataatttctttaaagttttaaaagaagtttttattt
tatcgggaaactttcgagaggtaaacttcttcaaattttgcgaattcttt
gttgtttgtggaaggttctttgctataattatctttagatctaaaatagc
agctgcctcaaaattttcatagaatatagttgaaagattggcattagtaa
atatgtaaaaattgacaaaatttgccgaggattccctgagcagcgaacat
ttcaaattctatggtctgtgcttattcttgcaaggtttacttatgtttta
taaacaaaactgtcatcatacaatgaacaaattaaaaatgtagcgtgatt
ttattcaaattctcttcgactcaagtattcccatgagcgaaagcaaaatt
aatgactttttcccaaagcaacaaagcaacagtttgctatcaacgataca
atacaatagaatagtaggagttgtatctccatctatatttcTATTACCTC
CATGCTTATATATAGtcgtagtggtatagtggtgaTCATCCTTGAAACCC
GGTTGGGAGGCCCGAGTTCGGTCCCCCAGTTCTCTGTTTTTGAAAGATGA
TTAatctaatttctaaaaagtGCTTTACCTTTATCCTCTTGTACTTTTAC
tcgccaaaaatttgaaaataaaaggggtaatactaaaatacgcaaccagc
cacaaccagccacaatcagccacaaccagccacaatcagctgcaaccagc
cacaaccagccacaaccagccataaccagccacaatcagccacaagcAGC
CACAACCAGCCGCAACCAtccaaccacccagaaaaaggtacaaccaccaa
ggaaaaggtacaaccacccagaaaaaggtacaaccacccacaacaaccca
gaaaaaggtacaaccacccaggaaaaggtacaaccagccaggaaaaaagg
tacaaccagccacaaccacccagaaaaaggtacaaccagccaggaaaaag
gtacaaccacccacaacaaCCCAGAAAAAGGAACAACCAGCCataaaaag
gtacaaccacccaggaaaaaaggtacaaccacccacaaccaaaaTTTAAA
GACTTATACTGTAACATTTTGTTTCCTTGATCTTTGACTTCAAAGGTTTA
GAAAGTTCCATATTCAGCCCTCATAGACCTCATATCACCGTTAAATTATT
GCCCCGCAGGtgacaaataaaaacattagacGAGAAGAACTAAACAAAAG
GCCTAAATTGATACTGAAATTTAAGTTGGCAATATCGTTGTAGCAATTTT
CTGAGAAGAGCTAAGATtgaccatgaacatataaacgactggacatctat
cttttattgtctctttgaagcgagcttcgttgccacctgtttttcaaaat
tggtatgaaaaatccgacagatattccgtcataattttatttctttgaat
tattcaggtaaaaagattgatagagcttgaacattactcctaatgcacaa
aaaaattattttcgaatttttttacaagtttgtaatttattttatcaatt
ttttcaactctgaaatgcacaATTTCAacgcgtgtatacttttgaatccc
ttttgtcactccaataattttttttatgacttgaaaaaaatagcttgcca
aagtcgAGAGCAtgtgtaataagaatatcgaaattagaatgtgacactct
ctaaaattattagacacttttaagtcaaaattttgaaatattagtcggag
ttttcacaagctgacgatgattttgcctctgttatctttgttatgatata
gataaaagacttgagaggAGTaaaacaacagagacttttgtcgaagtttt
gacgttgttaacAAGGTacattcccaagtggtatatcatcaaaatctatt
gtttcattttatgcttttaacgaggcggcaacgaagctagccgtgttatc
ttcaaaaaagacaatggagatggatgtccagtcgtttatatgctCATGGA
TTGACATATattagacttgagtgtcttggcttcacattggtatgaaaatc
tttttggagGCCCGTGGTGGATCGGTGGTTTCATTAAGGTTAAaggtata
aaatgttatgttaccctcttttacaaaaaatgcttagttttaataagtaa
ttaacctttttgttttgaattttttttaaatcgtctGCAAAAGATGGAAC
TATCTAAAACTTTTCGGAAAATATTTCTGCattgatgtatcaaaagttat
gactctttttgtacaaaaaattcgatgaaaaaatggtcaaaaaccactat
tttcaagattttgagactaagaagcttttacaaaatttttccgaaaatct
atttttagttcggctaaagatacaccatcttgcgcaaaaactttttcaaa
atgttttttcttcgccgaaaataaggtcctcaTAGTTGAAATACTTGTct
ttgcaaaagtcttcattttcttcttcatcaaagttttactcgcgattttt
cttttttagattcaggaatagttggcctaacagaaaatgtatgaCTTGTC
ATGGTTTTGCTGCGTGGATCAGtcagaaaaatacattttctaCATGACAA
ATATATGAAAAATTCGCTATGGTCAGAACCcttaatttttcaaacataGA
ATGTTTTTCGCTTCTTGAGACGTCATAACCACACATGATTAGCAATTATT
TTGATACGTTTCCTTCTCTAAGGAAAACTTTAattctcatttgggaattg
aaagaccatgttttgatgaaaaaaatgattaaaatgctACGAATTGTTTT
TTGATGAAGGAAGGAGAGTGAAtgataatgtcattactgctaGAGTGATT
AAATTGACACATGCCCGATAAAATTTCTACacttggtcttcagaggttga
tattttctttgaaaacttggcctctgataTCCTGGGTAACTTTTGAAATA
ATCGTTACAgccttaaaaaaatattaaaaagcaAATGGAATGAAATATTT
TCgacacaaaacaacaaaattgatgatttcgatttctttgctAACCGAGT
AATAATCAATTCTTTGAGAAGCTTGGGCCCATAAAAAGCATAACAGATTA
ACCAGGCCTTGATAATGGTGAAGTGTGAACAATCAAATTGTGGCAAAGAA
TGAGTTTTTGAATGCTTGagatttattttaaaaagattaaaaattacaaa
aaaatacaagattgtaaatattttgcaaCATGTTAACTTTCGGTTTTACT
GTGTAAGAAATTTAGTGGTCTGGCTCGGTCTTGAATTTTCCTTTGAANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCTTTTCCATGGCAGAGGG
AGTCTGGGCATGGGACAGCTGGTGGTGTGGTACCAGTTTCGGTTCCAACT
TTGAGGGCGGCGGCAACTGTAATTGAAAAGAGAAggtcaaaaaattattt
tgtggATTTCTTATGTGAAAAAAACTCTAGTTTATACCTACAATAGAACT
CTTGCAGAGGTTGATCAAAACTCAAGCAGAGGTTGAAAAGACCGAaaata
gaaaatgttttaagaaTTTAGATTTAACTTACCAGCCAAGAGAGCAAGAG
AGATAATgataatcttcatttttttgtttgttttatggtcagttGGTGAG
AATCGATCAAGTGATGCTGAACTTCTTGCTGTATTGGGTTTTTATACATT
TCAGGACGATCATAGCCAGTATCATGGTATGTTGTTTACAAAACAAGATA
TCTTGCTGTAAACGCCTTTGAAGTCGCGGGTGTTGGCTATCGTAAATCCA
CGTTAACGAGGTGTGATGTAACAAGTTAAATTCCGACTTAAAATCATAAC
ATTCAATTTTAACAATAAAGCGAAAATATAAAGCCATCTTAAAGCGTTCA
ATCAGAAGAATTAAGCTTTGAATAAGTAGTGTTTCAATTTAATTAGAAAA
AAGGTATGCTTGTTTTGATTAACAAATATTTTTCGATCTTGCTTTTTAGC
CCGCTTTTTAGGGATACATATTCGGTAAAATTTGTGCCAAGTACACCTGT
TGGTGTAATACCTCGTCTATTCTTCATAATGATCCTGGGGGAACACTGAA
AGTATAAAGGAAACTACGCAGGACTTCCATCTCCATTGGAAAAAAACATA
GTGAAATTTCACCCCAATTAGAAAAGTACTTATTAAGATTTCACCCCACT
AGGAAAGTACATATTAAGATTTCACCTCCATTGGGGAAAGACAAAGAAAA
CATAACAGTGGTTTTTTAACTTGTAAAAAGGTCGATCTATTCCCACTAGA
ATATAGCTTCTTTATCTTATGTCTACTGACTTGAAAAATAACAGAGTTat
cgagacaggggtgtagtaaTAGAAGGTTCTAAGTAAAGTTCATGGACTAT
ATTAATGTCCTTTCACGAGGGAGAAATATCCATATCTTGGGTGAAAGATT
CCACAAGAATTTTATAAGGTCtttaaaaactgattttgttattttgaaat
taagGCAGGATCAGTTTTCTGAAAAACGTCTTTGTGTTCTTCCTGAAGTT
CTACCCTATTGACCTTGATAAGAACTTGGTAAGATCTACAAagattcttt
tctttaaaaaaactttttagatcTTGGAAGATCTTATTAAGACTTTCTAC
TAGGGAAATGAAGTAACTTATTTCCAATTCGAAACGATTTCAAACAAACG
CTCGattgaaattaaattctttagccagatttaaaaaagaaagtgctaac
gaagaaaaaaaacattcgcTAGACTCAATGCGTCGTTACCAATGTCAATA
GCCtcttttttatgctttgaaAAGGTTTAAGATTCCATTCTACCCCTTGC
TGGAAAGTTGCTAAAGGGGAGTAGGAGTGGGGTTTTAAAGTTCCACTTAA
CTGGCTGGTAAACttgtttgcttaaaaatcaaagtcaataaaATGATCAA
ACAGGACTTTCCCAAAATAAAccgtgtttcaaaaaaaaaaaaatctatac
aCAATAGCTTTTATCAACGTAAAATCCtgtttcaaaaatttagttAAGAT
TAACATAAGCAGGAAATCGGAtatatcaaaaaattgaaaagaataagCTA
AAATTGCAATACCCTTAGATTTATTTCAAACTCGTCTAATCTCGGTTTAG
AATGGTTATATCATAGCTAATTTTTTAAGATTATCTAAAATGTATAAAAA
CCCAAGACATCAAGAAATTCAGCATCACTTGATCGATTCTCATCaactga
ccataaaacaaacaaaaaaatgaagattgtCATTGTCTCTCTTGCTCTCT
TGGCTGGTAAGTTAAATctaaattcttgatattttttatttaaagtaaTT
TCAACCTTTGCTTAAACATTGAGCAACCTCTGCGAGATACCTATCTATTG
TAGGTATAAACTAGAGCATTTGTTTAACATTAGAACTCcacaaaataata
ataataacaatctCTTTTCTATTACAGTTGCTGCCGCCCTCAAAGTTGGA
ACCGAAACTGGTACCACACCACCAGCTGTCCCATGCCCAGACTCCCTCTG
CCATGGAAAAGCCGACGGAAACTTCCAATACATCTACTATGGACGACTCA
ACAAAAACTACTTCCTCCAATGCTCAAACGGATTAGCTTACTGTCAAGCC
TGCTGGCCATTGTCCTTGGAATTCAGTGAAAACTGCAACCAATGTTTGTA
CAGCAAACACGACGACTGTGTCACCACACAAAAATGGCACCCAGCCACCA
CCTTCGCTTGCCCAGACAAATGCCCAGCCCGTGGACCACACTTCAGTGGA
AACATTGAAGACCCACACAACCCACACCAATACATCGCTTGCTTCCACGG
ACAAACTGTCGGATGCATCGCTTGCCCAAAGGGATTGGAATTCAACGAGA
AATGGAACGCCTGTCTGTTCAAAGGAAAATTCAAAACCGAGCCAGACcac
taaatttatttttgaaaaacattttgtagtgattttttaaccaaaaacct
aaaatctttAAATGCTAATTTTGTAACCTTATCTTTTTTGCCTCTAACAT
CCTCACTTTTAtgctctttttttttaatttctaatttttaataTCTGtca
aatttcttcttcttcaaatgTAAATCCTCACTGTTCTTTCATCAAAATAA
ATCTCAATTTCAAATAATT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00023678TCONS_00023678Clytia hemisphaericatranscript
TCONS_00023679TCONS_00023679Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00023678-proteinTCONS_00023678-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000458supercontigsc0000458:85967..95585 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.08	0	0	0	0.18	0	0.08	0	0.07	0.27	0.14	0.16	0.49	167.96	14.11	5.81	5.78	0.56	0	0.13	0.5	0.43	0.24	0	0.17	0.46	0	0	0.23	0.25