XLOC_015972 (gene) - C. hemisphaerica

Overview
NameXLOC_015972
Unique NameXLOC_015972
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000670:104784..114145-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_015972 ID=XLOC_015972|Name=XLOC_015972|organism=Clytia hemisphaerica|type=gene|length=9362bp|location=Sequence derived from alignment at sc0000670:104784..114145- (Clytia hemisphaerica)
CATCGAAGAGTGTGATTAACGATTAATTGCTCTCTCCGGGATGCAATTAA
CGATTGATTACTCTCTTTGAAGGCGCGCTAAATAAGAAAAAATAACTCAT
CATATTTCATTTCATTTTAGAATAAAATAAATCAACTTAAAAAAAAACGA
AACAATACCGTGAATAACAAAATTTTATGGGAAAATATTGTAAATTAAAA
AAATGCGAAACATGTTTCATGGGAATTTGTTTTTTCATTACTGGAGCTGT
TTTACTTGGACTTGGTTGTCAACCAGTGGAAACATATCAGAAAGGTGATC
TTTGCGACGATCCATATGGTTGGGACTTGATTCAATGTGAGATCGGTAAG
GAAAAAAGTTGGGATGGTGAGAAAAAATTATATTTTAAAGTTTTCGGTCC
CATTTCTCTTATTCTTGGTCTTGTTCTCATGATTATCCCGATCGTGATGT
GGGTGACTAAGTGTGGCGACGACGGATGTTGTAGTTACGGCGACGACGAT
GATGAGCTATCGATCGGGGAACTGAACCGACTAACTTCAGAGCGCATCCG
TCAAGAAGAGAGAAATCGTTCATTTGAAACGTCGAATACAGAAAGACTAG
ATGATCTATTAGCTGCCTATGAGACATCATTACCAAGTTCCCATCATGAG
CGACGCTCTAGTTCACCCATGGTGACACCATCAGCACCACTACCTAGCAG
CTCTACACCCAGTGCGCCTCCTCAAGCGACAGGTGGCCGAGGGAGTGTTC
CTGAAAGACGTGTACAGCCAGGTCAACTGTACAATGGTAAGAAACTTAGT
AGTTTGTCACATAATCAGAAAATTTAATACGAACCATAGTAAATTTTCTT
GATAATAAGTTTTTAGCTGAAGCCATTTTATAAGTTAAAAAGTTAAAAAA
AGATCTTCAGTCAAAATAGGCTTGGTTCGTTATGATTAAAAAATCGACAG
TTGACCCTAAATTGCTGAAATATTCATTATGGGAGTATATGTAATACGTC
ATAGTTTTCAATAAAAATACCGTAAACTTAATTCAATTATTATCAATTTT
TACCATAGACCAACCGCCAGGTTACGATCAATTACTCCACCCACCAACTT
ATTGGGAAGCTCTTGAACTTGAAGGTCATTTTGATGAAGGAGGCGCCGAC
ACAGAAGAAAATGAGGATGGAGACACAACTGTTTAAAGACTGCTGGCTAA
TGACCTAAATAAATGACGATGTTACCTAAATGAATAAAATCATATAAAAA
TGAAGGCCGAACGCCAAGCCATGGTCAACAAGATCATTTTTGAAGATAAT
AACAGAGAAGAAATGGACACATAACTGTTAGAAGACAACTGGCAAAAGGA
CAAAGGAGAATGTTACCCAAGTACATGAAATTATAAAATGCCAAGCCAAA
CATTGATTCTATGAGGTCTTGAAGATCAAAAACCACCTCAGTTGTCACAT
GTATAGCTTGTTACAAAACAAAGGGAACCTTCCTCTGGGGGCTTGAGTTC
GAGCACTGTGACACTATACCTTATCGGGGAAAACTTCGTCGGGGAAAAGT
GACGAAATTTTGGACAAGTGACGAATATTTTCCGCGACGAAAATTTTTCC
CCGGCCTTAATGCGTTTACCAACTACCAGCAAGTGACGAATTTTTCCCCG
ATCAAAATTTTTCCCGACGATTTTTTCCCCGATAAGATAATTGTACAAAT
TTTAACCGTAATCTATATTCACTTTTCTAATTCACTTTTCTAATAATCGA
ACTGATAATTGCATCAATGATGTGCGAAAATGCAGCGGTCTTGGTTAATG
AAAAATTATGTTTCTTTTAAGTAATTTGCTCTGCTGCAGTATCGAGCACC
CTGATTGTGAAAAGACCATTTTCAAGACAAAGGATTATATGCACTGGCGG
ATTTAAGACAATAGAGCAAGTATGTCGGAAACATGCGAAGGATTGCAACG
CGTCAAGCTCGTTAAAAGATAATGAAATAAACAGTTACAAGTCTTTTCCT
CTGATAAGTTTGACATGGTCTAAAACCGCCTATGATCAGTATTCAAGAAA
ATATCTTTGATATCCATGCTCAAAATTTCCAAAATAAATTACTTCAACCA
ATCACATAAAGTTCTAAAACTTAGGGCTTGATGTGATACAGCTGATAACC
CATGATCCGTTCAATTATTAGCTGCGAGTACGCATGCGTTCTTTCCAAAG
TCTAACAGTAGATTGGTCTACAGAGTTCAGCAATAACAGAACAATTCTTG
TAAATATTTTTTGTATATCCAAAAACTAACGGCGAAACATCATTTTTATG
ACTTTACATTACATAACCTTAGCGTCAGTTTATCAATTGCTTTGCGGTTA
AATTTTTATCTGTATTGGTCGCATAGACTGGGCAATTGTCGCTAAATTTT
AGATTCAAATGATATCGCGTCCTAAAAGTGGTCTATATTCAAATTGTAGC
CGTTTATTTTAAACCAATTTAATTTTTTATAACCTATGTAAACTATGTAT
TATATAACACACCATAATCTATAATCTATCTAATTATATATACTTATCAT
ACCCTTAATTTAAATAACATTTTAATGGTCATTCTGTATATATTTTTCGT
GTAAACAATATTTCGACCTGCTTGGTGCAGGTCTTCGTCAGGTCTAAACA
ATACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGTTAGTGATCGCATTTTTACGGTGGATTTTCAATTCATAACGGC
CATTGTTATTTCGAACGTTCACGTCTAGAAAGTTCAAACTTTTTGTTGTA
TCCTCGGTTATCATATACCTATCATATACATTATCATAGCTTATCATACC
CTGTTTTTAATATTTATATCATTATACATTTTTCTGACATACAATTCTGG
TTTATCATGCGTTTTAATATGTTCTATCCTCAATGCCTTACTATATTCGT
CCAGTTCATCGTGGAGGGAAAAAAGAAGTCGACAATACACTAGTTATTTA
ACATATATGTATCATTGTTATAAAATTCACATAGGCTTTCAAGGATATAA
TATTAGCTGCATGTGTAAACAAGGGCACGTAATACCCTGACAGCCTGTGA
TTGTCACAAATCTCAAAAATTCTTTATTTTCAGTAGGCCATGTTTCAGGT
AATAATGTCCGTCTTTTTACGGACAGGATACGGCTGACGGCAATATAGCG
TTATCGGCGCTTTAATGATTTTTAAGTTTGCCTTGAAAAACTGATCTCAT
AGTCATTATAAAAAAACCCGGTCTGGCAATGTATCGTTTTAGCATTTTTT
TAATTTTTTTTTGTTACAAACAACAGACAAGTTGCGATTTGCATACTTTT
TGATCACGTTACCAAAATCTCCTCTTGGGATTGGTCTATTACCTAATCAC
GTGATAAAAAAATTGCAAAATAAATCGATTTTGGTATGTAAGCTCTATAT
AATTTTAACAATAAAAAGAGACATAAATAAGCCTTCCTGCGATTGTCACA
GATCTCATTAATCTTTATTCTCAGTAGGCCATGTTTCAGGTAACAATGTC
CGTCTGGAGATGAAAATCCGTCCAATTGAGATTCAAATACACAATATCCG
TCTTTCCTTGAAGAGGGTTTTTAGTCAGGTGATTTCAGTCTCGATTCTTA
AAACCTACCTTAAGGGAACTTATTTTGGCGGGAACTAATTTTGGCGAATT
TGGCGAGTTTAGACAAAATTCGCAAAAATTAGTTTCCGTCAAAATTAAAT
ATTTTGGTATTTTGCCTAAATAACTTCTTGAGTTCGCAAAAGAGCTTCAA
AAGGCAAAATAGTACAGATTTACGCTGTCATTCGTCAAAATTAATAGACG
ATATCGGCTTAACATGAAAACTCAGATTTGATCCCCGAGAATTCCCCACA
ATGCTTTGCGCGGAAAATATTTCACCGCGAACTTTTTCCCGCACAAAGCA
TTGTGGGGAATCCTCGGGGATCAAATCTGAGTTTTTATGTTAAGCCAATA
TCGTCTATTCCTGCAAAATTAAAAAAATTCTTCAATCGCCAAAATAAGTT
CCTTAAGGGTAGTTGCAACACTCTTTGAAGGGATAATCAGATTGATTCAG
ATATTTTGTCTTGAGGTTCCTTTCATAATCATGAGCGAAACCTCCGAATC
TTTTTGTCTGAGATTCGAAGTTGAGATGTGAAAATTTGAAATCTCATAAA
AATGGATTATGACATGTTTTTTTCGCATGAAAGTTCTATTGTTTTCTTAC
AAGACGCGACTTTTGATATTACGACAGAAATTTACATATTTTATATTCTT
TAAACTAATTACACTTTATTATAATATCGTTTAAAGAACAAATGTGCATG
GCTGGCACGCCTGAGCGGGGGGAGCTACACCTAAAATTTGCCATATAGGA
GGTGGGAGCTGGTTGTTTTTCCCGACAGGTGGGGGGAGCTCTATCTTGGG
GGGGGGGACCTGCATTAGTTTATGTAACTCTGGGGGCTAAATAACACTTC
CTAAATATTTTTCTTTACTGTTGGTTTTTAATTTCTCTAAACCTTTATGT
TTTCATGCAGAGTGTGATCTGATCCTTACAATGCAAAAATGAAGAAGACA
TTCTATTGCATTCTCTAAAAGTGCACACATATTTAAATAGAGCTTTGTGA
ATGACATAAAATTTTCCCCCTATACTGGGACCTAAAATTTTATCAGGCTG
GGGGGACCTTGTTCTCAGGGGGGACCTAAATTTGGCGGGGGGACCTAGAA
CCCCAGTCGGAGCCATGATGTGAGTGGCTAATTTGAACTCGACCCTGGCC
TACCTGCTATAGTAATCTCTATGAAATAATACCAAAAATAATGATTACTT
GAAACTTTTTAGTTAGCTTGGAAAAGTGCCGTAAATTCGGTGATTTCTCA
CGTAGCTCTCAATATGTCCAATTTGATAATATCGTGTTTTCCATTTCAGA
AAGAAACAAATAAAAATAAAAATAAAAACAATGTGAAGTCAATCGTTAAA
TAGTCTAAAATACTTATGAGACGAAGATAAGGCCGATTATTGATTGTTTC
TCCTGATGCGAAAATGGAATGGTTATGTATGTGGAGTAGGTTTTTGTTGT
CTTGTGGCTGGAAGTGCACTTTTAGGTGTGGGTTTAACGCCACCAACCAA
ATTTAAAGTGGACCCAAAGTGTGACGATGAAGTACAAGAATGTGAAAGGT
ATATCTTCTACGAAATGACTTGGAATAGGGAGTGAAATCTTCCAACGTAT
TAGCACTGTGTTCATATATTATATTTTTTCATCACTCCCCAGAATCTTCC
CTTATAATAATACTGTTGACTCTCGCTAATTTCGAACTCGAACGAAATGG
AAATCTGATTTGTTCGAATTATAGAAAGTATTTAAAGTGTAGTTAAAGAA
GGTTTCTTCTTGACGGGGACTGGAAAAAAGTTCGATAACAGAAGTTCGAA
TAAGTGAGGGTTTACTGTATAACCTTGTTTTGCGAGATGCCTTGGAGTTT
TTACAAGATACTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCTAAGTTCCCCCCCCCCCTGGGATTTGT
TCGAATTATAGAAAGTATTTAAAGTGTAGTTAAAGAAGGTTTCTTCTTGA
CGGGGACTGGAAAGAAGTTTTAATAACAGAAGTTCGAATAAGTGAGAGTT
TACTGTATAACCTTGTTTTGCTCTAATTAAACCGATGTTACACTATAATC
AGTGTAATATCATAAAAGCTATTATTATATACCGGTAGGCGAAAACAGCC
ATTGAATAATTCCTGATATACCACGGTATTATACCACAGTAGAATTTTTA
TTTTCAAACTTTTTTTCGAAACTTGATTTTTTGTCACTTTTATTTTGTTG
CTATTTAAAAGAGAGACAATAAAAGAGTTCAATTGTGAATTTCGTGAACA
ATTAAATGACTTAAGTCATCTAAAAAGCAATTAAAAAGAAAAAACATTCG
AATGTTCGATTTGTGTAAGAGTTTTGTGTGAATCTCTCGGAATCTCTCTA
CAAAATAGAAACTTATAACTTGTTTTCGTCTTTGGGCATATAATAAAACA
TATATTCAATAGGTTTACGTTGGTTATTAAATTTATTAACCCTCGGTGAT
GAATATTCAATTTGGCTTCGCCTCGTTGAATATTACATCACCTCGGGTTA
ATAAATCTCAATAACCAACTTTTACCTATTGAATACCTGCTTATTAATAT
CTGATGAATCTAAGGCTTAAACCAAACTCCATTACACCTTCAAGCACCCT
TCCCTAAAACTACTAGATATGTAACAGAATATGATCGCAACAACGTCTAC
TACTGCAAGATTTTCGGTATTATTCTCTTCACAATCGGAGTAATATTATC
AGCTATCGATCTTGGATCCTGTATATGTCAATTCTATAAGGGAAACTTTG
GTGAGGACCTTGATGACCGATCTTGGCATGATAGGGCCGAGAGACTTGAG
GAGCCACGAATTGGGGGTCCAGAAGCTGATCGTTTCTTAGAGATTAGTAA
TCGTAGGCGAGAAGCAGCTCGCAACCATCGTACCATGCATACAAATGATT
CTGAAGAGGAAGAAGAACGTAGACCAATATACAGTAGAGGACAAGAACCG
GATTTGAATTGGCGACATTCTAACAGACAACCTTCCTTAGCTGAACGGAG
CAACATGAGAAGTGAAGCTGCTAGAAATAATTATCCAAGACCAAGTAGTA
CATCACCTAGAACTTCTCAAACCACCAGACCTAATGCTCCTGCATTTTCT
TACCCTTCTGCTCCACCCTCACGCCCTTCTACTTCTCCAAGTGCACCCGT
CTCCCCACCTGTGACGTCATCAACAAGAGGTGCCAATAACAGACAGGATC
AACCGCCAAGATATAACGGTATTTAAGAGTAATATCCACTGAGACAGCTT
CTGGGTCCTTTTATTTTTTCTGGCCAATTGACAAACCATGCGTATTTCAT
AACATTCTAGTCTTTATGCAGCCCCTTCTTAATACTAAACTTTTAACGAA
TCCTAAATTCAACAGTAGTGGAATCCTCATAGATGATTTGAGTCATGACA
ACAAACCTACAAAGTTTGCATCTAAATCTATTCTTTAGATTCAATAGAAA
TGCCATTGGCTTTTGCTTCAATTATGATCAACTTTTACCTTTTACTCCCT
GTCATAGTTTTCAATAAAAATACCGTAAACTTACTTCTATTATGATCACT
TTTTTTACTATAGACCAACCGCCAGGTTACGATCAATTACTCCATCCACC
AACTTATTGGGAAGCTCTTGAACAACAAGGACATTTTGAAGATAATGACA
TCGAAGAGTCAATGACACAAAACAATGAAGAGAGAATCTCACCTGGTGGC
AATAATGAAACCTCTGTTTGATATCAAAGTCACTCGTTCACTAAGTTCGT
TCCTGTCAACTATTCTCACAAGGCTCTTAGACAGTGGGATCCATGCCTTA
TAAACTTTACTCCATAAATCAATTTCCTAGACTCAAAAAAAATTTAAGTT
CTCCGTGCGTGTTCCAGTTATGGAGTTGTATGTAGTATCAAAAGCAACCA
ACGTGTACAAAAAAGACACGCTTTTCTTTTCATACAATATTGGACAGAAG
GTTATAGTCTTTTCAAAAATGCATGGAAATTTTCAAAATAAGCTCTGAAA
ACCCATTTTTACCAGGGCCAATGTGGTTTTTATTAGATTTGCCAAATCCA
TTCTTCCAAGTCTTTGAAAGTATAAAAGTCACAATGACTAAAGCCATAAG
GACTGCTAGCAAGACTTTAGGTGTCATCTGCCAAATAATCACTGGTGGTT
CATTTGGGAATTTCCCAGGTTTTTCTTGGCACTATTGAGGATTTTTTGAA
AAGTCTATAGACCTTTTGTCCGAAATTGTGGAGAAAAAAAAGAGAACGCG
AGACTCGACCAAAATCTACCAAAGCTGTAGTTTTCAATCCCATTTTAAGC
CAATAAATCCCGGGGGGGGCAGCCAAGCAAAATGACTGACGGGTATGTGC
GGGCACTAAGGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00028215TCONS_00028215Clytia hemisphaericatranscript
TCONS_00028214TCONS_00028214Clytia hemisphaericatranscript
TCONS_00028213TCONS_00028213Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00028213-proteinTCONS_00028213-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:104784..114145 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.24	17.72	8.05	6.38	37.81	28.87	27.09	30.23	26.96	34.28	39.13	25.1	20.17	17.82	7.36	10.44	25.13	26.48	14.72	22.15	12.75	12.05	10.16	10.96	16.27	18.51	12.59	13.16	9.69	9.22