XLOC_016369 (gene) - C. hemisphaerica

Overview
NameXLOC_016369
Unique NameXLOC_016369
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000708:61548..70429+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016369 ID=XLOC_016369|Name=XLOC_016369|organism=Clytia hemisphaerica|type=gene|length=8882bp|location=Sequence derived from alignment at sc0000708:61548..70429+ (Clytia hemisphaerica)
ACCAGACGCAAAAATAATAAACACTAAAAGAGGATAACAAACATGAAATA
AAACCTTGGTACTGTGGTTGTATTTGTTTTTGGTACCTTTGTTCTTGCAC
AAGAATAATGAAAGAGTTTGGTTGGACGAAACATgtttaaaaatgaattt
cagGTAGGTGAAAACACATGTATTTGTTTAATTTACACTTCTTTATTAGG
ACCCTGTTtataactagtcatagctttcactaaatgcccccaatgaaagg
tcatgtcatgcacttataaagcttgtaatgctttaaagattgaaacataa
aaaataatcaggaataattaattgatttgattattgattgatttaattat
tgattgattgattgattgattgNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtgcggaacacttaattagCCGGAACATACAATACGAACAAACG
CGCGCGcgcaaaaattcgagattcctgtccaatatccttgcgtgaagcta
tgaaggcaataacattttaggctgaacaTTGTAAGATTATTGGCCACCTA
TAGAATTGAAGAAATTagccaaatttgctcaaaattatctgaaattcata
aaaaacatgAATGTAGTAATTCTTTTACTTCAAACTGTAAGTTAGAGCAG
ATTTGCTCGACTAGAAAGGCCAATGTAGTAACCATGTAAGACACTGGGTT
CTAAATCTAGATTTATAACGCCATGATGTAAGTGTATGTTACACAAAAGC
ACTCCTACATTGTATTTTCGATACCGTCGTCGAGAAgaattttccttgaa
ttttcGTTACCAAACTCCTCAAAAGTTGACCGCGCCGCTGAGGGTTGACA
GGGTTTCTTCTATCCTCATTCATTTAAGTGtcatgaaaaatatattaaat
taaaaaaaaaatattaagcaAACTTATGTTACTTTAAAAGTATCTATTGA
TTGTAATAAAGGTATTGTTAGCTGAAAAAGATAGGAATTTACTCGTCTTA
TTGAAAGTGTTAATTCTtgcgggtttttttttttaatataaagaCAAAAA
AAGCCAACTTGCACCCTACCCTTGCAAAATCAGCTGCATAAAAATGAATT
ATTCAAAACGAGGTCTAACTCTCTCATTTGACTTTAGGATGCTTTTGAGA
GTATAAAAATTTTGTAACagtccatttttttgaaaatgtgagaTGAGAGA
AATCATAGATTATGTATGCTAGAATATCAGTATGCTGTAACAAGAGAGAA
ACATGTTTTTAATTCATGAAAGAACTTGAATACGAGGTTATCTAGAATAC
ACGNNTTTTTTTTAataaccttccaatccagccttccatgaggctgatta
tgtcaaaaagtttagaaacatgtaagaaacatttaaggctcaaaagaccg
atttcttaagaaatatcgaggctgcttggtaaaactagtttcttaaaaaa
aaaacgtgtatggatTCTAGATTATACGCCAACTTCTTCTTATGGGATGG
TCAATGCTAATAACGATGACTCTAGATGTTTAAATTCTAACTACAGGTAT
TAAACTTCAATTTTAtatctcttctttctttctNGTCCAATGCTAATGAC
GATGACTCTAGATGTTTGAGTTCTAACTTCAATTTTATAtatcttctttc
tttttatagGGAGGTCCTTCTCTCGACGTCTTTTCCGTTCACGGTAAAGA
TCCTTTATCCAAGTTGAAAGTACATGGTCCATCATCAGCAGTTCGGAAGG
AATTTGATAACTTATTACGAACATTCATCCTCAACTTGAATGGAGATTCT
GCGCGATCCAAAATCGCGTACCCGAAAAACACGAAACAATCATTACATCT
AACTCAGCAATTTCTCATCCTTCAATTATCACTTCAATCGGGAAATTCAT
TCACACTTGAAATTTCAGTCATCACGCAATCCAACCTAAAGCTACGCATC
ATCTTTTCCAGCTCAACGCGCGAGATTTCGATCACAGCTCATCACGTTAA
AATGCCTTGTTCCGTAGTCGAAACTGATTCTTGGATCAACCTAGGTCTTG
ATATGAAGGATCTAGTGGCAAGTTATTTCGAAGGAAACTCCTTTAGTCAC
GTTGACAGTCTTGTGATCTCAGCCAACTGTAAATTGAAGAGAATATTCAC
TTTGAAGGACAAACCGGAACACAGTATTGATATCCCGAAGAATTTAAATT
TTCCTGTCAACATACAATTTTTAACACAGGTGAGAGTTTGAAAGTAACTT
TGTTTCAACTATctaattttaaatcttttctgTGTGGGAATCACCTCTTC
CATCCAGCTGAAAATCAATCCCTCTGAGATTTTAACTGCAGCCAGTTTAC
GATTCTCTTTCTTTAACCATTTGCTTTTCATAGTATTTCGCCTTAGTCTT
ACAACAAACTAGCCCGGGgaccacttatcagcgccatcaagtctatcaaa
aagccaaatttggcaaacatcgttttttggctttgcttgaggtggtagca
gCAAATCCataccactagatccagtctCTATTTGGTGAAAACAACAAACA
TAAGCAGTGATTTTCACTTCTTTTAACCCATGCTCTCAATCATGAATGTC
AATATGGAATTTTTATTCCCTTTCCTTTTCAGATTATTGATTCACAGACA
TTTGACGAAGCCAACATCAATATACGTGCTGGTACTGGTGGCCACCCACT
CAAACGAACACCCGTCAAACCGTCAACAAACACTTCAGAAAACTCTCATA
TCGCTTTCGGATCTCGTATTCGTTCAGGATCTCGTTCTAAACTTGATTTA
GAGGAAGGTACCGACTGCTCAAATACCGCACGTCGTTTTTCTAAATCCGG
AAAATCAAAGACTAAGCAATCAACTGATTCAAATGGCTCTGAACCAAGTT
TAACTTCTAGAGGTATTAGCATTCTACCTTCGAGACCATCGGCTAAAAGC
GTTCGCCAACTAGATTTGAACAATAATGAATTGGAAGCTCGCCCGCCAAG
CGTTCAGGTGGAGAAGAAAACACCATTACAACCTCGACCGCCGTCaggta
agaaaaataaaacaccAAACGTACGAAGAGGGCGTATTGttaaaagtgct
gacgtcagatCACGCGAAATACCTGCCACAAATGACCGCCCGAAACAACA
AATCTTCTCGAAAAGTGCTGACTCAAGAAACAGGCGGCGCCCTTCTATAG
CAGAACCAGATGAACTACCAGCTGTTCTCAAAATCAAGAAAGGTATTTCT
CGCTCAGCATTCGATCTAGAACAAACAGAGAAAGATATCAGTGATAACCG
AGAATTgcatttcaaaagtaaatcttTGACGGTTTTACCAAAAATCGGAT
CAACGACTAAGCGAAATAATAGATACGGCAGAAGTATTTCTATCTCCCAA
ACCGAGAACGATGAGAGTGATACAAGAGACGGTGCCGATGATCAAATAAC
AAGAGCCGAAAATGATGTACCGAATAACGAAGACTTGACCGACAATGTTT
TCGCATCAACGACAAACGACGAGGATGAAACGAACGAGGATGAAACGAAC
GAGGATGAAACGAACGAAGAATTAATGGCTCTAGCAGATGAAAATGAGAT
TGATGACTATTTGAAATTGAGAACTCGGAGTAGTTGTCGAGAAGATGAAT
CTACGTATAGTAGTTGTAATAGCGCCAACAGTGATTTGTATGTTTACTCG
TCTAGACCAAGATCTGTTATTAGACAGAATCGTAACTCGTTAAGTGTTTC
GCAACAGAAATCGTCGACCTCTCGTAGTCGGCCAGCAAGTGAATCCAAAT
CGCGGTCTTCTTCACGGAACGGGGATGAAAGTGCTCCTAGACCGAAATTT
CTTGATCAACCACAAAAGAAGTCTTCACCTGAGGCTCAAATCTCACCTca
tcaaaatggcggacatAATGACACTTACACTATTTCTAATGCTTCAAACG
GTGATCATAAGGAGCTAGAGAAATCGTTTGGTGTCGATTTGAGTTGGGAA
TATTCAGAGTCTACATCTATGCTTGTTCTACCACAAGAACTAAAGAATGA
AAATACTAGTAATAAGATACTGTCTTCGAAAAACATGAATAACAAAAAAC
ATTCCTACGAGAATATTCCAGATTCTGGAATATCTGATATTGACTTAGAG
AGGACAGATAAAGAATATGTAAACGAAGAACATAGAAGCTCTGGGAATTC
ACCAGAACTACATGTCACAGATATGAATCAGAATTATACCCACGAGGAGA
GGACGTCATTGAAAAATAGTCACTCCTTCGTATCACAAGATGAAGatcaa
ttgaaaattgaaattgaccAGAAAACTGACACCAGTAGCGGTATCATCAG
CGACTTTTCAAGTAGTGATAATCTGAACAGTAATGGTGAAATCCAGCCTC
AAATCTCCAGAGATTCAGAACTAACGAGAGCagaaaaacaacagaaaagt
ATTATCCCCTCATCTTTCATTATGAGAGAATCATGTGATTCAGATAGTAT
GTCATGGTTAAATAGTTCTCAAGATCAAACCAATAATTCAGTTGCCATGA
CAATGGATCATAATAACAAAATGTTAGATAAATCACCAAACATGGCTTTA
AGACAACGTTTGAAGGAACAGTTAGGTTCACTTATAATGCAAAGCAAAGA
TGCAGAAGATAGTGATAATGTTTCAGAATGTAGTGATGATACAACTTATA
CGGATATGCCACCCAAGAAGTTTCGAAACTACAGGTAATGTTACATTCCT
CTTCTGGCCCCGGAGAAAGGGAGGTTACATAGGCAAACGGGTTCGAGTGG
GTACCTCTTTGGATATTCAAAATCTCCGGAAAGGGTCGAAAAAACCATAA
AATCTAATATTTTCAATCCCCTATTTTCCTAATTTCAGTTTGTAAAAGCg
ttgaaaaaagtgaattccTATATTTGCTCCTCATAAGacaaatttgggaa
aaaagtccCAGTTAAGGTCCCAAAATTACCCACTTATTGGCTTTTGTCAT
TAGTTTTTTATCCAAAAGTTCCAAATCCCGTTCGCTGTGCGAACACCGTA
CTAGTCTACCATAAGCGGTTTATGTGTGTTCCTTTATTTTCCACAAATAT
TCCACAGATAATGTTTCACAGATAGTGATGTTTCCACAGATAGTAATGCT
TTTTATTTCACTTATCATTGTAGATACCAAGATGAGATTCAAAGTTTGAA
TTCAACATTGGACTTATCAGCCACCATACCAGCAACACCCCGCGTTGGTG
AACAAGCAGATCCGAACAATAACTACCCAGGTATGTTGATTTGTAAATgg
acgcttttttatataacaGCAAAGTAAAGCTTCAAGGCTAAAAATCTAAG
AACGTTTTTAGAAAGATTTAAATGCTTTGCAGACTCcaaaacattcaatt
ttcattaaattcagaccaaaattctcaaaatagtgaaaatgggctcttcc
agaaaaaaaccattcatggggggtggaggatatattgtccaggggtattg
aaaaaaaccctgaaaaactgccatgtccatggggtgaatctgcgatgtcc
aggggtaaatatttctgtccagggggtcaacttgatggttgtccaggggt
aaaacacgtgtccagggggtgaaaaatcgaaatgtccaggggtagatcac
agaaaaaataatatatcctccaccccccatgaacgaattttttctggaaa
agcccaattataagaacatttttttttagacttgaaaccttggaaaaaat
tcagaatttctTCATTGAATCTTATCATTTTTGACGAAAGGGGTCCGCaa
ctcattgagtttcaagcccgaagggctagaggtcaatctctaacctttct
caggcaagaaaaattgaagccttaaaatatgcgccgtatttttgatgtcg
gattgaatctagcaattcctttgttttcgagtgatatatttttcaaaatt
aagcggtaaattttagtttcaatctgtcatttgtgtgaaaaccagGCGGG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaac
caggcgggtcgctcaaggccgcgcaactttggtaggatttgttggcttca
aatcctaccaaagagattgacctctagcccttcgggcttgaaactcaatg
ccgCAACCTGAGCATATTCTCTTACGCATACGTCCCAGCGCGGAGTAATC
AGAATCTTCTCGGAGATCAAATATGCACTGTCTAATATAGtttgagattt
ctttttttaataggTAAAATGGACGGTAGTCAATCAGAAGAACTTTTGGA
TTTGAAGTTCGATCCAGACCTCAATTGTTATTACGACCCTATCACTCACA
AATATTATGAGTTGAATTGACCATTGGATTTTATAACGAGTGTTACATTC
TGAGGTATAATTTCTTTTCTTGAAGGCTTGTACATACGCCATCTTTTGGA
AGTTTTAAAGCTCGATGTATGATATCTGCTTGTTTTGGATTTATTTTGCT
AAGTACTAAACCATTCCTTCCTTCCTTCCTACAGTGAAAGTTGTTGTAAA
AGACGTACAAACCTTTTTCCCTTCCACGTTAAAAAAATAAGTCCTTTGGA
AGCGATGATGAtagattttcaaagtttttaaaaatcaatattaGTCAAAT
GATAATAGAAGGGCTATAAAAATATAATCAGATGGCACAGTAAGTTCAGT
GTTTGAATGCTAACTTGCAACAACATACAACCTCTCCATATATTCAAATC
AAaactgtttttcaattttttgtttttaaaaaaatccaaatttttaaaGT
TAGCAATTGCATATGATCAATTGTAAATAATATAGTTAAATCGTATAGgt
tttataactttataaccatagtttcattttcttagctaaattttttctca
attggGTTTACTTTTTCTAATTCGTGGAACTACCGTAAaccctcgaataa
gcgcccgggggcttatttaattttttaggctctaaggggggcgcttattc
aggcggggcgcttattcgagcggggcgcttattcgaggatttacggtaca
ttattcgaatctttctgttatCCGAATTCAAATGTCCCCTCAGCTGGGAA
GTCGTACaaataattcgaatctttctatactTCTTTAGTCCCTTGAAGAT
AGAATTAGAGAGGGTCAATTGAGTTTATTCTCAAATGTTTTCATTGGCCA
GTCGGCTAGGATGCTTGGTAAACATTCAAAAGCTATCCAGGCGCTGCTTT
TAAAGATGTCAACCtgtcaattttgattttatttcgcTCTTATTACTGGG
TAATCACTTCATCCCTGGCAAGTCAGGTATTCTTATCAAATCTACCTACC
ATTCATGGGACATTTTTAACTTAAAGAGGCTCCTTAATGTTGTGACTGTA
TAAAATTTAATATATTGAATGATTTTAGTTTTAAACtgggaaaacatttt
tctgtatatatcaaaattgaaacataGAAACTTAtagaaaaatctatttt
tactCTAACCGTTGTAAATATTTTAAGTTATCCAAAAACATTGTACATTT
TTAATGGTCATGAAATAATATACTACTGAAAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00028845TCONS_00028845Clytia hemisphaericatranscript
TCONS_00028846TCONS_00028846Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00028845-proteinTCONS_00028845-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000708supercontigsc0000708:61548..70429 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.87	1.67	0.94	0.86	53.94	40.38	31.43	32.01	19.68	23.14	15.06	18.46	6.18	4.85	2.8	3.13	3.54	3.17	7.65	7.89	4.64	5.15	2.18	3.42	32.81	25.9	3.63	4.54	1.92	2.09