XLOC_029309 (gene) - C. hemisphaerica

Overview
NameXLOC_029309
Unique NameXLOC_029309
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_102:529317..538289+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_029309 ID=XLOC_029309|Name=XLOC_029309|organism=Clytia hemisphaerica|type=gene|length=8973bp|location=Sequence derived from alignment at scaffold_102:529317..538289+ (Clytia hemisphaerica)
taaattcaaaacaagaaaagagaGGAAAGAAGCAAAGAAAGAAATTGTGT
GTTGGATACAAATGTCGGGGGAGACTGGAACAAGAAGAAATGACCGTGCT
AAATTATAAAACTTTGATATATTTGCTGTTTTTCGACCCTTCTTTTGTGT
TTGGGCTTAGTGGTTTTGGTGTACTTTTTAACCATCGGTTTCCAAGAGGT
ACACATGCTTACGgtttttaagaatttatttaaagcattaaagtTCCTCC
CCGCGGTTTtgacttgcgtgaatgcgtgaaaattttgaaaagctgCGTGA
ATTTCGTGAATTAGAAAAATGAATtgtgtgattgcgtgaattgaaggtct
gcTTGGGGGAGGGGGCTCGTCAAGGCTAAGGCCACACTGATGTTCTTTCC
AGGCTGCTATGGNtatacttttcacaaaaaaagcctaatctctttgggga
aatcattttattgtttcaaactttttttaagttaatgacaaataatttct
ttatttcgattttttcggaaaaattttctatttggctacatcccaagtaa
tagctgttttcgtatggaaatttgtagcctgggaatccaagctcataatt
ttagaaaaaacaaaaaatacctcacctcacaaagttctaaaattatagag
cttggtgcaggtagattagtctNNNNNNNNNNNNNNNNNNNNNNNctccc
tgcaggcgagttacctgcaccaagcgttaaaccagcagcaaaaatatcat
aaactagactgtgaaaaaagtttaacgcttggattcccaggctaggaaAT
TTGGtgaagaaaattgccaaaaatgaggttttttgcagattttaaaggaa
agatacttccacaaaaattttccggaattgtatttttagatactaaatag
atacatcacctgaaccaaaaaaaaattccaaaatgttatatttttaccga
gattagggctttgaaaggtgaaatactcttcttcgaaaaactcttctttt
tcttcttcatttaattttttcatttaaattttttgatttttaaattctaa
aagggtaggtttaacaggacatataaaaaaagttatacattgatcttttt
aaaatacagaaattgccatttaagttggtgtaaaatcgaaaaattgggta
gtccagagcccttaaagggacataaaagtagtaaaatgtaaacatcgCGA
GAACCACGTGtgattaaagagaacaattagaATCACGTGTTCAAagcaaa
cttgtaaaacaattgaaacaatcaaagtcagtcatatttgtttttaattt
ttattttgacatgtggtatttgttttgattttgtatctgctgcatacagt
ttgtttataaatttcgtcagtactttatgtccctttaaaggcAGCGATCt
gttaaaatgtaataaaagaatcctattactttttctaaagaacgcgtcat
ctctatcactttaaatgaccgattagtgaagtatcttgtaaaaactccaa
ggcatctcataGTTTTTCCTTCAGTGAAAATGTAACGTGTGCAAGCGTAA
GCTGTGGCGAAATACAACGACTTGGTTAATTTCTCACTAGACTCTCGAAG
CGTCAGATCTTaaacaatagaccttatcgaagtttttgatttttttgaaa
aagcgatgcattgtgggattgtttcgagtgtatcacaatagaaatctctt
agaaaTTCATCGAGATGATTCTATTGTAATTCACTCGAAACAATctcaca
atgcatcacttttttataaacataaGGTCTATTAGTCACCTGTTAATAAT
ACAcacattttttacaagaacatttaaaaattttgaaaagaaattaggTG
ATTAAGAATCGacaagccttaaaatattcttaactcgTTCTTAATATTCT
TGCCATCGAAATCTTtcattcttatatagtttgttcttataaaacagtGT
AATAATTTTAATTTGTTTCAGGATGTGTCGATTACAAGACTTTTGATTAT
TGTCCTGGACAATCTACTACACTACACCACGCACAGAAAAAAGATTATAT
TTGGTTTAAAGTTATcgcaaagcaaaaaaaaagaagcagTGAATTCGATG
AAGGATTTGAAGTCAAAAATAGCAACAGACATACTATCGAAGCTGGCAAT
CTACACATCAAAGACCTTGCACCCTCTGATCATGCATTTTACTTCTATAC
GCGAGCATCGACGACATTTCTTGAATGCCCCGACTATGAAGTTAATGTAT
ATGGTAAGATAAACGTTATTGAAtgatcattttcaatttcaaaggaAGGG
TGCAGGGATGCACGTTCTTTTATAANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCTTCAGTGAAAATGTAACGTGTGCAAGCGTAAGCTGTGGCGAAATACAA
CGACTTGGTTAATTTCTCACTAGACTCTCGAAGCGTCAGATCTTaaacaa
tagaccttatcgaagtttttgatttttttgaaaaagcgatgcattgtggg
attgtttcgagtgtatcacaatagaaatctcttagaaaTTCATCGAGATG
ATTCTATTGTAATTCACTCGAAACAATctcacaatgcatcacttttttat
aaacataaGGTCTATTAGTCACCTGTTAATAATACAcacattttttacaa
gaacatttaaaaattttgaaaagaaattaggTGATTAAGAATCGacaagc
cttaaaatattcttaactcgTTCTTAATATTCTTGCCATCGAAATCTTtc
attcttatatagtttgttcttataaaacagtGTAATAATTTTAATTTGTT
TCAGGATGTGTCGATTACAAGACTTTTGATTATTGTCCTGGACAATCTAC
TACACTACACCACGCACAGAAAAAAGATTATATTTGGTTTAAAGTTATcg
caaagcaaaaaaaaagaagcagTGAATTCGATGAAGGATTTGAAGTCAAA
AATAGCAACAGACATACTATCGAAGCTGGCAATCTACACATCAAAGACCT
TGCACCCTCTGATCATGCATTTTACTTCTATACGCGAGCATCGACGACAT
TTCTTGAATGCCCCGACTATGAAGTTAATGTATATGGTAAGATAAACGTT
ATTGAAtgatcattttcaatttcaaaggaAGGGTGCAGGGATGCACGTTC
TTTTATAAcaatattaaaattttttgaaacctttggatgtttctcaactt
tttgagttttaagcctaaatatattcttaacatgttcttattttcgccat
tttttaagTATtctattttcctaaaaaaatgttcttaatacttGCCACAT
CCAAGCCTTATGTActtatatatagtttgtttttataaaaaaaagtgtac
tctaaaaaatttaatttccttTTTACAGAAGTAAAACCATTAATCAACAG
AATCAAAGCTGAAGAAGGCGGTACAGTTGTTTTAAGATTTTGGTCAAACA
TACCAATAAGAGAATTCAAACCTAAAGCTTCTAAGATATTCAAAGTGAAG
GATAAAATAATGTTTGATGGTAACAATGGGGATGAAGATAATTATGCACT
TACAAGTACTACCAAGAGCGTTAATTTTCGGTACAGATCAGATGTTACAC
ATAATTTCAAATATGCTGCACATACATATACAAGtaagttacacgttttt
tttttttataagaacgtcaaaaattttcgaagccttcggatgttcttatt
tttttggatttgaagcctaaaaatgtNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccg
aagttttcctcttcgtcggtaaaatcgctataaaatcgcttaaatttcct
cattcgccgtaccagatataaaaagcttccgtcgtgcctgcatgttctta
tatagtttgttcttataaaaaaaaacgtgtagtggtcagggtaccttttt
ttacacttttatgAGTTCCAGGTAGGGTTGCATAAAGTTGACGCTCacta
atttgattttcaaagaggaatatgattttcatcgaataagggagttaATA
AAGCATCGTTTCTTATTAACGGGGACTttgaatttcatcgaataaaggaG
CCTATCGAATAAAATCTGTCCCTCGTAGGTgacatttttttcggaaattg
gGACATCCGCTAAATCAAATTCCCATCAGAATTTATCTTTTAAGGTATCA
GTTTGAATTTTAGTGTAGTCTAAtgtcattgggcttttccagaaaaaaac
cgtatccccctgttgaggagctccaaccttttgtgaattatccccttgga
attccaggcaattttaggatcataccccctggaattccgaatttttacag
atttccaatcattacccccatggaattccgcttatttttgacagattttt
gtctactgctatggaattccactgcatttcaaaccatacccccttggaat
agaaatggactcctcaacagggggtgcacggtttttttctggaaaagccc
atttatagaaaagtttttactttaaattggCAATTAACTCACAGTAAAAG
CCcaatactttcacaaaaatgccattttatgcttcgGGTGTATCTTCTTG
TTAAATCTAGACTAAATTTTGATCCTAGCCTGAACGTATACCGTAAGATG
ATTTCCTCTAGTTTGAATCGAAGACCTCGATAGATATACTTCCAATAAGA
GACTCTTtttgctagaggatgagcagaagcctatagATTTTCTCAAAAAG
GTACCCAGCTGACACCCAACTTTGTTTCAACGTtcgtctaacgttatatg
gacgttgtgaacgttagataaacgtcaaaaaaacattgtgtgccagttgg
gtaACAATATCCATGATTAAATGAAAAACACCATTTTTATAAGCGTGTAA
ATGCTTAATCAGCCATTCCAGAATAAGGGATACGTTGCGTCACGCGCATT
CTTGACTGAATACCGCCAGTAGAGACCTAGGAGCGCCGCGACCCATGTAC
TATTTGATAGCAACCATAGAGGGTTCAATCGGGCATAGCTCTCCAGCAAT
CGTGGTTGACATTTTCTCGGaatgaccttaatgaatgtactTCATATTTC
TAAACATTCTAAATAGGCGGACTTAAGCAAGAATTATTTAtatatatgtc
tttttttatctCATATCTAAAGATTTGACGATCCGCAACATAAAGAGGAA
ACAAGCAGGAGTTTGGAAAACCGAATGGACAACTAAAGGGTTATGCCCAA
GAAATTTTTCTCTCGCTGTTCATGTGTGGTTTGATCCTCGTAAGTTATTC
CATCatgatacacccctgtctcatttcCACTGAcctaatacacccctgtc
tcagttcCACTGACctgttacacccctgtctcagttcATTGACCtgacac
acccctgtctcagtccAACTGAcctaatacacccctgtctcagttcCACT
GACctgatacacccctgtctcagttcCACTGAActgttacacccctgtct
cagttcATTGGCCTCTCAGTCCCACTGACCtgatacatccctgtctcagt
tCCACTGAcctaatacacccctgtcttagTTCCACTGACctgatacaccc
ctgtctcagttcATTGACCTGACACACTCCTGTCTCAGCTCCACTGAcct
aatacacccctgtctcagttaCACTGACCTGATACACCACTGTCTCAGTT
CCACTGACCTGATACACTCCTGTCTCAGTTCCACTGACCtgacacacccc
tgtctctcagTTCATTGATCtgacacacccctgtctcatttcCACTGAcc
taatacacccctgtctcagttcCACTGACctgatacacccctgtctcagt
tcCACTGACCCGGTAAAATATGCAAGTCCTAAGACCCCAATGATTCCATT
TTCACCAAGTCACGTAAGAAAGTATACTGACCACAGACGGATGCTTCTTA
GACCAAATTCATTTATAATCTATTTAATACAGTAATATTAGTGTTACAGG
AGGATAACGTTACGgggaaaaaaaataagtttgtacAATTTACCCTTCCA
ttcttttttgcttattttctactttGTCTGGAATAgccgtctagcatgct
agaccaCCACATGCTCTAACTtcccccagctggcacataacgttgtttcg
acgtttatttaacgttcacaacgtccatataacgttagatgaacgttgaa
acaacgttgtgtgtcagctgggtcaAACTACGGTCAATGCTTTGAGAAGA
GAAACGGTGGCGAAAAAAAcagaagtaaaattttctttttcattttgata
gTACCACCAACGACCACAACAACAACTACCactacaacaacaacatcaAC
GACAACGACCACAACGACCACACCAACACCACCGACCACACCTAAACCAA
AGGATCCTCTTGAATCTGGTTCCACAAAAGCAATCGGGGCACTTTTCATG
ATCGCTATTTCATGTGCTTCGGTCTTCGTTTTTTGGAAATTCTATCTTCA
AAAGTAAGGAGTCATTATCTGACTACGTTCTTCTTTTTCTATATAATACC
AATTTTATAAATTCAGGTTGAAAGTAGCATGCCATTTCACAGTTGCAAAG
cataatgggtaatcaggaccactctgttggtccaaagttttgaaaattct
ttgaagATTATTGCGTATAGCCAACAGAAATCCAgtatggaggcgcaatc
agtcctgattactcaTGATcttttcgactgtgaaatggcctacaAAAATT
TGGTATAGCATTTGAAATACCTCGATTTCGCCATAAAGGAAAAAGTGTTC
AAGATATCTTTTTCATGAAGGCTGATTGTTTTATCTACGCTTTCCAATGG
AAGAGacacaaaaataatgaaaagattatttcaaattattttttttatta
agaaaGATTTTTGAATGATGAATTCGACTTTTTTAGGGACATACATATAT
TTTCAACCCGTTTCCCAATGTCTTGTCTATAAGTAAGTAAGACTGCGACC
GCAGTCAGAggcaacccgaaggctcctctttcaatagctatctacccgaa
ggtaggggagggctccactctttctccctggattgctccacttaccctag
catcaagcagagaggcatcatgTACCATTTTGGCAACCTTTGGTATGACC
CAACtaggggttgaacccacaactttgcgaaccgtagccggatgctctac
cactgcactacggtcgtcTTGGCTATAAATGAATGTTTTCTGACATTTAG
AAAATTGGATGAAGAAGACTCAAAAACAACATCTGGTGTACCAGGAGGAG
GACAGCAAGGCTACCAAGCACAATACGGAATGAATGGAGGACAGCCTTTA
GGGATCCAAAAACAGATCTCAATTGGAGGAGGACAACAGGGTACCCAAGC
CCAATTCGCAATGAATGGAGGACACCCTTTAGGAATCCAAAAGCAGGTCT
CAATTGGAGGAGGACAACAGGGTACCCAAGCCCAATTCGCATTGAATGGA
GGACAGCCTTTAGGAATCCAAAAGCAGATCTCAATTGGAGGAGGACAACA
GGGTACCCAAGCCCAATTCGCAATGAATGGAGGACACCCTTTAGGAATCC
AAAAGCAGGTCTCAATTGGAGGAGGACAACAGGGTACCCAAGCCCAATTC
GCATTGAATGGAGGACAGCCTTTAGGAATCCAAAAGCAGATCTCAATTGG
AGGAGGACAACAGGGTACCCAAGCCCAATTCGCAATGAATGGAGGACACC
CTTTAGGAATCCAAAAGCAGATCTCAATTGGAGGAGGACAACAGGGTACC
CAAGCCCAATTCGCAATGAATGGAGGACAGCCTTTAGGAATCCAAAAGCA
GATCTCAATTGGAGGAGGACAACAGGGTACCCAAGCCCAATTCGCAATGA
ATGGAAGGCAGCCTTTAGGAATCCAAAAGCAGATCTCAATTGGAGGAGGA
CAACAGGGTACACAAGCACAATATGAAATGAATAGAGGACAGCCTTTAGG
GATCCAAAACCAGATGTCAACACAAGGAGGATGGCAGCAGAATGGCCAAG
AACAGTACGCAATGAATGGAACACATATGGCAGATAACCAGTATCAGATG
CAAATGCAATGAGCAGGACAACAGGGTACACAACCCTGGTAAGGAGATGA
TATTCTCGAATAATGAATAATAAAGATTGtcaacaaattttattttttta
tgaaaaatctttttatgtttgaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00045861TCONS_00045861Clytia hemisphaericatranscript
TCONS_00045862TCONS_00045862Clytia hemisphaericatranscript
TCONS_00045863TCONS_00045863Clytia hemisphaericatranscript
TCONS_00045864TCONS_00045864Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00045861-proteinTCONS_00045861-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:529317..538289 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.75	11.8	3.63	2.93	5.14	3.57	3.09	2.89	0.42	1	0.16	0.05	1.02	0.69	0.07	0	0.24	0.15	1.84	3.76	0.19	0.06	34.83	27.06	0.35	0.42	1.03	2.68	24.49	35.6